From b9d659bae2d147ad8ab6b5d6c1072b9013b385da Mon Sep 17 00:00:00 2001 From: Godwin Ani Date: Thu, 6 Mar 2025 13:18:05 -0500 Subject: [PATCH] Updated EukPhylo QuickStart (markdown) --- EukPhylo-QuickStart.md | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) diff --git a/EukPhylo-QuickStart.md b/EukPhylo-QuickStart.md index 3bab006..db1e831 100644 --- a/EukPhylo-QuickStart.md +++ b/EukPhylo-QuickStart.md @@ -1,8 +1,7 @@ -> Note: The EukPhylo pipeline is currently being dockerised for easier installation and use. More information about the dockerfile can be found here - [Docker branch](https://github.com/Katzlab/EukPhylo/tree/Docker) +> > Note: The EukPhylo pipeline is currently being dockerised for easier installation and use. This is still in progress so please do not install. More information about the dockerfile can be found here - [Docker branch](https://github.com/Katzlab/EukPhylo/tree/Docker) +## Dockerfile -## Docker - -Users will need to have the docker software running and installed. The [docker file](https://github.com/Katzlab/EukPhylo/blob/Docker/PTL2/Dockerfile) can be executed with: +Users will need to have the docker software running and installed. The [docker file](https://github.com/Katzlab/EukPhylo/blob/Docker/PTL2/Dockerfile) for part 2 can be executed with: ```bash # Build the container @@ -10,7 +9,6 @@ docker build -f Dockerfile.txt . --tag eukphylo:1 # Current command is: docker run -it \ - --mount type=bind,src=$(pwd)/databases,dst=/Databases \ --mount type=bind,src=$(pwd)/input_data,dst=/Input_data \ --mount type=bind,src=$(pwd)/output_data,dst=/Output_data \ eukphylo:1