From c2c616ecf649fe09d02698e74e35ab961775ff3d Mon Sep 17 00:00:00 2001
From: "Adri K. Grow" <42044618+adriannagrow@users.noreply.github.com>
Date: Thu, 12 Jun 2025 00:33:01 -0400
Subject: [PATCH] Updated EukPhylo QuickStart (markdown)

---
 EukPhylo-QuickStart.md | 1 +
 1 file changed, 1 insertion(+)

diff --git a/EukPhylo-QuickStart.md b/EukPhylo-QuickStart.md
index 649423b..2ea9273 100644
--- a/EukPhylo-QuickStart.md
+++ b/EukPhylo-QuickStart.md
@@ -64,6 +64,7 @@ EukPhylo part 1 runs CDS (genomes) or assembled transcripts (transcriptomes) thr
         * Hook *.dmnd file ([Current version Hook-1.0.dmnd])
         * Hook *.fasta file ([Current version Hook-1.0.fasta]) 
 * A folder called “Scripts” with scripts from [here](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1/Transcriptomes/Scripts) on GitHub
+* An empty folder for the output named as indicated in the run command for flag -o
 
 ### Running:
 `