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@ -6,6 +6,8 @@ We also provide a suite of utility scripts for describing data output by EukPhyl
Note that EukPhylo used to go by the name of "PhyloToL," hence some residual instances where we refer to "PTL1" and "PTL2" instead of "EukPhylo part 1" and "EukPhylo part 2" respectively (for instance, in the Github folder structure). Note that EukPhylo used to go by the name of "PhyloToL," hence some residual instances where we refer to "PTL1" and "PTL2" instead of "EukPhylo part 1" and "EukPhylo part 2" respectively (for instance, in the Github folder structure).
> ** Note: The EukPhylo pipeline is currently being dockerised for easier installation and use.** More information about the dockerfile can be found here. [Docker branch](https://github.com/Katzlab/EukPhylo/tree/Docker)
## EukPhylo Part 1 – Gene family assignment ## EukPhylo Part 1 – Gene family assignment
* [Overview and modularity](https://github.com/Katzlab/EukPhylo/wiki/EukPhylo-part-1:-gf-assignment#overview-and-modularity) * [Overview and modularity](https://github.com/Katzlab/EukPhylo/wiki/EukPhylo-part-1:-gf-assignment#overview-and-modularity)
* [Setup](https://github.com/Katzlab/EukPhylo/wiki/EukPhylo-part-1:-gf-assignment#setup) * [Setup](https://github.com/Katzlab/EukPhylo/wiki/EukPhylo-part-1:-gf-assignment#setup)