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Updated PhyloToL Part 1 (markdown)

Katzlab 2024-08-09 16:39:28 -04:00
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PhyloToL-Part-1.md

@ -45,7 +45,7 @@ PhyloToL part 1 for genomes takes as input genomic CDS, such as are available to
with the first ten digits representing a unique sample identifier. Each sequence in the CDS fasta file should be formatted as downloaded from GenBank: with the first ten digits representing a unique sample identifier. Each sequence in the CDS fasta file should be formatted as downloaded from GenBank:
>/>lcl|NC_000001.11_cds_NP_001005484.2_1 [gene=OR4F5] [db_xref=CCDS:CCDS30547.1,Ensembl:ENSP00000493376.2,GeneID:79501] [protein=olfactory receptor 4F5] [protein_id=NP_001005484.2] [location=join(65565..65573,69037..70008)] [gbkey=CDS] >\>lcl|NC_000001.11_cds_NP_001005484.2_1 [gene=OR4F5] [db_xref=CCDS:CCDS30547.1,Ensembl:ENSP00000493376.2,GeneID:79501] [protein=olfactory receptor 4F5] [protein_id=NP_001005484.2] [location=join(65565..65573,69037..70008)] [gbkey=CDS]
ATGAAGAAGGTAACTGCAGAGGCTATTTCCTGGAATGAATCAACGAGTGAAACGAATAACTCTATGGTGACTGAATTCAT ATGAAGAAGGTAACTGCAGAGGCTATTTCCTGGAATGAATCAACGAGTGAAACGAATAACTCTATGGTGACTGAATTCAT
TTTTCTGGGTCTCTCTGATTCTCAGGAACTCCAGACCTTCCTATTTATGTTGTTTTTTGTATTCTATGGAGGAATCGTGT TTTTCTGGGTCTCTCTGATTCTCAGGAACTCCAGACCTTCCTATTTATGTTGTTTTTTGTATTCTATGGAGGAATCGTGT
TTGGAAACCTTCTTATTGTCATAACAGTGGTATCTGACTCCCACCTTCACTCTCCCATGTACTTCCTGCTAGCCAACCTC... TTGGAAACCTTCTTATTGTCATAACAGTGGTATCTGACTCCCACCTTCACTCTCCCATGTACTTCCTGCTAGCCAACCTC...