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Updated EukPhylo QuickStart (markdown)

Adri K. Grow 2025-10-28 13:27:12 -04:00
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EukPhylo-QuickStart.md

@ -162,7 +162,7 @@ Below are several optional ways to parameterize EukPhylo Part 2
|Parameter|Options|Description|Default| |Parameter|Options|Description|Default|
|:---|:---|:---|:---| |:---|:---|:---|:---|
|`--force`||Overwrites all existing files in the `Output` folder|NA| |`--force`||Overwrites all existing files in the `Output` folder|NA|
|`--tree_method`|`iqtree`, `iqtree_fast`, `raxml`, `fasttree`|Change tree building software|`iqtree`| |`--tree_method`|`iqtree`, `iqtree_fast`, `raxml`, `fasttree`|Change tree building software|`iqtree_fast`|
**For BLAST and GUIDANCE:** **For BLAST and GUIDANCE:**
|Parameter|Options|Description|Default| |Parameter|Options|Description|Default|