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Updated QuickStart EukPhylo (markdown)

Godwin Ani 2025-01-28 13:52:50 -05:00
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QuickStart-EukPhylo.md

@ -44,7 +44,7 @@ EukPhylo part 1 runs CDS (genome) or assembled transcripts (transcriptome) throu
* db_OG * db_OG
* Hook *.dmnd file ([Current version Hook-6.6.dmnd]) * Hook *.dmnd file ([Current version Hook-6.6.dmnd])
* Hook *.fasta file ([Current version Hook-6.6.fasta]) * Hook *.fasta file ([Current version Hook-6.6.fasta])
* A folder called “Scripts” filled with scripts from [here](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1/Transcriptomes/Scripts) on Github * A folder called “Scripts” with scripts from [here](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1/Transcriptomes/Scripts) on Github
### Running: ### Running:
``` ```
@ -79,7 +79,7 @@ To add the XPC option, only available for transcriptomes, user need to add the -
* db_OG * db_OG
* Hook *.dmnd file ([Current version Hook-6.6.dmnd]) * Hook *.dmnd file ([Current version Hook-6.6.dmnd])
* Hook *.fasta file ([Current version Hook-6.6.fasta]) * Hook *.fasta file ([Current version Hook-6.6.fasta])
* A folder called “Scripts” filled with the 10 scripts from [here](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1/Genomes/Scripts) on Github. To run locally, pull out all scripts into main folder * A folder called “Scripts” with the 10 scripts from [here](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1/Genomes/Scripts) on Github. To run locally, pull out all scripts into main folder
### Running: ### Running:
``` ```