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Updated QuickStart EukPhylo (markdown)

Godwin Ani 2025-01-24 16:31:46 -05:00
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QuickStart-EukPhylo.md

@ -39,7 +39,7 @@ EukPhylo part 1 runs CDS (genome) or assembled transcripts (transcriptome) throu
### Set Up: ### Set Up:
* A folder called “AssembledTranscripts” with your assembled transcript fasta files * A folder called “AssembledTranscripts” with your assembled transcript fasta files
* A folder called “Databases” with the three sub folders: * A folder called “Databases” with the three sub folders:
* * db_BvsE (how we ID likely-bacterial sequences) * db_BvsE (how we ID likely-bacterial sequences)
* * db_StopFreq (for stop codon assignment) * * db_StopFreq (for stop codon assignment)
* * db_OG * * db_OG
* * * Hook *.dmnd file ([Current version Hook-6.6.dmnd]) * * * Hook *.dmnd file ([Current version Hook-6.6.dmnd])