From f0667ae49d98f632853f6a28fbeaed5483ec3e43 Mon Sep 17 00:00:00 2001 From: Katzlab Date: Fri, 9 Aug 2024 15:08:21 -0400 Subject: [PATCH] Updated Home (markdown) --- Home.md | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/Home.md b/Home.md index abad927..067c223 100644 --- a/Home.md +++ b/Home.md @@ -5,18 +5,18 @@ The core PhyloToL pipeline comprises two main components, which we refer to as P We also provide a suite of utility scripts for describing data output by PhyloToL (e.g. basic sequence statistics such as composition, coverage, and length) as well as performing some of PhyloToL's more complex operations (e.g. "clade-grabbing") in a stand-alone form. ## PhyloToL Part 1 -* [Overview & modularity](https://github.com/Katzlab/PhyloToL-6/wiki/PTL1-Overview) -* [Set up](https://github.com/Katzlab/PhyloToL-6/wiki/Set-up) -* [The Hook Database](https://github.com/Katzlab/PhyloToL-6/wiki/Hook) -* [Processing transcriptomes](https://github.com/Katzlab/PhyloToL-6/wiki/Processing-transcriptomes) -* [Processing genomes](https://github.com/Katzlab/PhyloToL-6/wiki/Processing-genomes) +* [Overview & modularity](https://github.com/Katzlab/PhyloToL-6/wiki/Part1) +* [Set up](https://github.com/Katzlab/PhyloToL-6/wiki/Part1) +* [The Hook Database](https://github.com/Katzlab/PhyloToL-6/wiki/Part1) +* [Processing transcriptomes](https://github.com/Katzlab/PhyloToL-6/wiki/Part1) +* [Processing genomes](https://github.com/Katzlab/PhyloToL-6/wiki/Part1) ## PhyloToL Part 2 -* [Overview & modularity](https://github.com/Katzlab/PhyloToL-6/wiki/PTL2-Overview) -* [Overlap and similarity filters](https://github.com/Katzlab/PhyloToL-6/wiki/pre-Guidance) -* [Guidance](https://github.com/Katzlab/PhyloToL-6/wiki/Guidance) -* [Building gene trees](https://github.com/Katzlab/PhyloToL-6/wiki/Trees) -* [Contamination loop: phylogeny-informed contamination removal](https://github.com/Katzlab/PhyloToL-6/wiki/Contamination-loop) +* [Overview & modularity](https://github.com/Katzlab/PhyloToL-6/wiki/Part2) +* [Overlap and similarity filters](https://github.com/Katzlab/PhyloToL-6/wiki/Part2) +* [Guidance](https://github.com/Katzlab/PhyloToL-6/wiki/Part2) +* [Building gene trees](https://github.com/Katzlab/PhyloToL-6/wiki/Part2) +* [Contamination loop: phylogeny-informed contamination removal](https://github.com/Katzlab/PhyloToL-6/wiki/Part2) ## Other * [Utility scripts](https://github.com/Katzlab/PhyloToL-6/wiki/Utilities)