From f1381b9de2daf1e438a9f970740a62605c49a7b7 Mon Sep 17 00:00:00 2001 From: Godwin Ani Date: Mon, 12 Aug 2024 12:20:03 -0400 Subject: [PATCH] Updated PhyloToL Part 1: GF assignment (markdown) --- PhyloToL-Part-1:-GF-assignment.md | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/PhyloToL-Part-1:-GF-assignment.md b/PhyloToL-Part-1:-GF-assignment.md index 77f5a53..9785716 100644 --- a/PhyloToL-Part-1:-GF-assignment.md +++ b/PhyloToL-Part-1:-GF-assignment.md @@ -72,8 +72,15 @@ Role of each script Main inputs : A folder containing the assembled transcripts, a folder containing the Databases, and a folder containing the scripts. -Optional inputs : Gcodes.txt and Conspecific.txt +*Optional inputs : Gcodes.txt and Conspecific.txt Outputs : ReadyToGo files (AA and NTD), taxon summary, and sequence summary. +* The Gcodes.txt is a tab separated txt file containing the genetic code of the taxa. This will most likely not be needed except for some organisms like ciliates +Example: +| EE_uc_Me03 | Universal | +| EE_uc_Me04 | Universal | +| EE_uc_Me05 | Universal | +| EE_uc_Me06 | Universal | +| EE_uc_Me07 | Universal | ### Processing genomes