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Updated PhyloToL Part 1: GF assignment (markdown)

Godwin Ani 2024-08-12 13:18:01 -04:00
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PhyloToL-Part-1:-GF-assignment.md

@ -102,7 +102,7 @@ To process transcriptomes, run:
* --output = path to output folder
* --genetic_code = specified genetic code, name of .txt file with Genetic codes
* -d = path to Databases folder
* >log.txt = if added to the end of the command, it will output a log file with progress, warning, or error messages
* \>log.txt = if added to the end of the command, it will output a log file with progress, warning, or error messages
* *For running with cross plate contamination removal, add `-x -n Conspecific.txt` to the line of code.
### Processing genomes