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Updated PhyloToL Part 2 (markdown)

Katzlab 2024-08-09 17:23:34 -04:00
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PhyloToL-Part-2.md

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# Databases
We provide a diverse database of 1,000 genomes and transcriptomes from across the eukaryotic, bacterial, and archaeal tree of life, with a focus on microeukaryotic diversity. This database is in the form of "ReadyToGo" files, the output of PhyloToL part 1. This means that using this dataset, you can jump right in to running analyses of any subset of these taxa using any of the OGs in the Hook Database (if you want to add your own samples or use a different set of OGs, you should look at [PhyloToL part 1](https://github.com/Katzlab/PhyloToL-6/wiki/PhyloToL-Part-1))
We provide a diverse database of 1,000 genomes and transcriptomes from across the eukaryotic, bacterial, and archaeal tree of life, with a focus on microeukaryotic diversity. This database is in the form of "ReadyToGo" files, the output of PhyloToL part 1. This means that using this dataset, you can jump right in to running analyses of any subset of these taxa using any of the OGs in the Hook Database. If you want to add your own samples or use a different set of OGs, you should check out [PhyloToL part 1](https://github.com/Katzlab/PhyloToL-6/wiki/PhyloToL-Part-1).
# Overlap and similarity filters