diff --git a/PhyloToL-Part-2.md b/PhyloToL-Part-2.md index b31b7a9..0c21a96 100644 --- a/PhyloToL-Part-2.md +++ b/PhyloToL-Part-2.md @@ -39,6 +39,8 @@ To run the CL, use a similar command structure as described for running PhyloToL | --sister_rules | in sisters mode | Path to a file | Sisters rules file | none | | --subsister_rules | in subsisters mode | Path to a file | Subsisters rules file | none | | --clade_grabbing_rules | in clade mode | Path to a file | Clade-grabbing rules file | none | +| --clade_grabbing_exceptions | no | Path to a file | List of taxa to _not_ remove for any reason | none | +