From fc28abe9f88b66c278cc7dd4befcaeafe0027cb9 Mon Sep 17 00:00:00 2001 From: Katzlab Date: Fri, 9 Aug 2024 17:46:01 -0400 Subject: [PATCH] Updated PhyloToL Part 2 (markdown) --- PhyloToL-Part-2.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/PhyloToL-Part-2.md b/PhyloToL-Part-2.md index b31b7a9..0c21a96 100644 --- a/PhyloToL-Part-2.md +++ b/PhyloToL-Part-2.md @@ -39,6 +39,8 @@ To run the CL, use a similar command structure as described for running PhyloToL | --sister_rules | in sisters mode | Path to a file | Sisters rules file | none | | --subsister_rules | in subsisters mode | Path to a file | Subsisters rules file | none | | --clade_grabbing_rules | in clade mode | Path to a file | Clade-grabbing rules file | none | +| --clade_grabbing_exceptions | no | Path to a file | List of taxa to _not_ remove for any reason | none | +