YuuMJ1997/EukPhylo
1
0
Fork 0
mirror of http://43.156.76.180:8026/YuuMJ/EukPhylo.git synced 2025-12-30 11:40:25 +08:00
Code Issues Packages Projects Releases Wiki Activity

Updated PhyloToL Part 2: MSAs, trees, and contamination loop (markdown)

MCLeleu 2024-08-13 13:17:43 -04:00
parent 56a869dbde
commit fcf1763a8a
1 changed files with 13 additions and 13 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

26
PhyloToL-Part-2:-MSAs,-trees,-and-contamination-loop.md

@ -17,22 +17,22 @@ The code to run PhyloToL Part 2 in full is
> python Scripts/phylotol.py --start raw --end trees --gf_list listofOGs.txt --taxon_list taxon_list.txt --data Input_folder --output Output_folder > Output1.out
Example of listofOGs.txt
>OG6_111062
OG6_111062
OG6_105827
>OG6_107533
>OG6_116087
>OG6_105227
OG6_107533
OG6_116087
OG6_105227
Example of taxon_list.txt
>Am_tu_He65
>EE_cr_Gthe
>Pl_gr_Vaul
>Ba_pa_Mlot
>Op_me_Hsap
>Sr_st_Fves
>Sr_ci_Sx06
>Op_fu_Gzea
>Op_me_Lcha
Am_tu_He65
EE_cr_Gthe
Pl_gr_Vaul
Ba_pa_Mlot
Op_me_Hsap
Sr_st_Fves
Sr_ci_Sx06
Op_fu_Gzea
Op_me_Lcha
Modularities