diff --git a/3_decontamination/4_Sacc_cerevisiae_dec_cov1_ymj.pbs b/3_decontamination/4_Sacc_cerevisiae_dec_cov1_ymj.pbs new file mode 100644 index 0000000..54b3423 --- /dev/null +++ b/3_decontamination/4_Sacc_cerevisiae_dec_cov1_ymj.pbs @@ -0,0 +1,20 @@ +#PBS -N 4_Sacc_cerevisiae_dec_cov1_ymj +#PBS -l nodes=1:ppn=48 +#PBS -r y +#PBS -q master_431 + +#转录组不需要做这一步,直接跳到下一步 + +cd /home/Data_01/yizhenzhen06/public_share/Saccharomyces_cerevisiae_DNA/3_decontamination/ + +echo Start Time is `date` + +blastn -db /home/Data_01/share_databases/human_genome_new/GCF_000001405.39_GRCh38.p13_rna_db \ +-query 2_Sacc_cerevisiae_dec_bac_hum.fasta \ +-out 3_Sacc_cerevisiae_dec_bac_hum_geno_rna.tab \ +-outfmt "6 qseqid qlen sseqid slen pident qcovs qstart qend sstart send mismatch gapopen evalue bitscore" \ +-evalue 1e-5 -max_target_seqs 1 -num_threads 48 + +sed -i '1i\tquery ID\tquery sequence length\tsubject ID\tsubject qequence length\tpercent identities\tcoverage\tqstart\tqend\tsstart\tsend\tmismatch\tgapopen\tevalue\tbitscores ' 3_Sacc_cerevisiae_dec_bac_hum_geno_rna.tab + +echo End Time is `date` diff --git a/注意!!!如果有报错,请先检查路径和文件名是否修改正确!!!解决不了再来问我 b/注意!!!如果有报错,请先检查路径和文件名是否修改正确!!!解决不了再来问我 new file mode 100644 index 0000000..e69de29