#PBS -N Sacc_cerevisiae_augustus_ymj
#PBS -l nodes=1:ppn=8
#PBS -r y
#PBS -q master_431

cd /home/Data_01/yizhenzhen06/public_share/Saccharomyces_cerevisiae_DNA/4_prediction

echo Start Time is `date`

source activate augustus

augustus --progress=true --protein=on --introns=on --start=on --stop=on --cds=on --codingseq=on --gff3=on --species=tetrahymena --extrinsicCfgFile=/home/Data_01/yizhenzhen06/miniconda3/envs/augustus/config/extrinsic/extrinsic.M.RM.E.W.cfg ../3_decontamination/5_Sacc_cerevisiae_dec_all_cov1_cdhit.fasta --outfile=Sacc_cerevisiae.gff3

conda deactivate

echo End Time is `date`