17 lines
597 B
Plaintext
17 lines
597 B
Plaintext
#PBS -N 4_Sacc_cerevisiae_dec_cov1_ymj
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#PBS -l nodes=1:ppn=48
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#PBS -r y
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#PBS -q master_431
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#转录组不需要做这一步，直接跳到下一步
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cd /home/Data_01/yizhenzhen06/public_share/Saccharomyces_cerevisiae_DNA/3_decontamination/
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echo Start Time is `date`
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seqkit seq -n -i ../2_assembly/spades/scaffolds.fasta > 4_Sacc_cerevisiae_dec_all.txt
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awk '{if($1~"_0.")print$1}' 4_Sacc_cerevisiae_dec_all.txt > 4_Sacc_cerevisiae_dec_all_cov1.id
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seqkit grep -v -f 4_Sacc_cerevisiae_dec_all_cov1.id 4_Sacc_cerevisiae_dec_all.fasta > 4_Sacc_cerevisiae_dec_all_cov1.fasta
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echo End Time is `date`
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