19 lines
794 B
Plaintext
19 lines
794 B
Plaintext
#PBS -N Saccharomyces_cerevisiae_dec_bac_hum_ymj
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#PBS -l nodes=1:ppn=48
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#PBS -r y
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#PBS -q master_431
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cd /home/Data_01/yizhenzhen06/public_share/Saccharomyces_cerevisiae_DNA/3_decontamination/
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echo Start Time is `date`
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blastn -db /home/Data_01/share_databases/human_genome_new/GCA_021234545.1_HCC1395BL_v1.0_genomic_db \
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-query Sacc_cerevisiae_dec_bac.fasta \
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-out Sacc_cerevisiae_dec_bac_hum.tab \
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-outfmt "6 qseqid qlen sseqid slen pident qcovs qstart qend sstart send mismatch gapopen evalue bitscore" \
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-evalue 1e-5 -max_target_seqs 1 -num_threads 48
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sed -i '1i\tquery ID\tquery sequence length\tsubject ID\tsubject qequence length\tpercent identities\tcoverage\tqstart\tqend\tsstart\tsend\tmismatch\tgapopen\tevalue\tbitscores ' Sacc_cerevisiae_dec_bac_hum.tab
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echo End Time is `date`
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