YuuMJ1997/EukPhylo
1
0
Fork 0
mirror of http://43.156.76.180:8026/YuuMJ/EukPhylo.git synced 2025-12-27 20:10:24 +08:00
Code Issues Packages Projects Releases Wiki Activity

Updating header in 1a_TranscriptLengthFilter.py

Browse Source
This commit is contained in:
Auden Cote-L'Heureux 2024-01-16 11:53:01 -05:00 committed by GitHub
parent 3d5cd6cebc
commit 1bc56f2a52
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
1 changed files with 9 additions and 20 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

29
PTL1/Transcriptomes/Scripts/1a_TranscriptLengthFilter.py
View File

@ -1,25 +1,14 @@
#!/usr/bin/env python3.6 # Last updated 01/04/2023
##__Updated__: 01_04_2023 by Auden Cote-L'Heureux # This script is intended to remove transcripts below or above a given
##__Usage__: python 1_ContigFiltStats.py # size range from a transcriptome assembly.
##__Options__: python 1_ContigFiltStats.py --help
######################################################################################## # Prior to running this script, ensure that you have assembled your
## This script is intended to remove transcripts below or above a given # transcriptome and renamed the assembled transcripts in the format of
## size range from a transcriptome assembly. # rnaSpades. Each file name should be of the format
## # Op_me_Hsap_assembledTranscripts.fasta, replacing "Op_me_Hsap" with the
## Prior to running this script, ensure the following: # 10-digit taxon identifier of your choice. See example data on the GitHub
## 1. You have assembled your transcriptome and COPIED the 'assembly' file # for reference.
## (contigs.fasta, or scaffolds.fasta) to the PostAssembly Folder
##
## COMMAND Example Below
##
## E-mail Xyrus (author) for help if needed: maurerax@gmail.com
##
## Next Script(s) to Run:
## AutoBactVsEuk.py (removes SSU then Bact) or 2a_removeSSU.py then 2b_removeBact.py
##
########################################################################################
import argparse, os, sys import argparse, os, sys