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Updating header in 1a_TranscriptLengthFilter.py

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Auden Cote-L'Heureux 2024-01-16 11:53:01 -05:00 committed by GitHub
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PTL1/Transcriptomes/Scripts/1a_TranscriptLengthFilter.py
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@ -1,25 +1,14 @@
#!/usr/bin/env python3.6
# Last updated 01/04/2023
##__Updated__: 01_04_2023 by Auden Cote-L'Heureux
##__Usage__: python 1_ContigFiltStats.py
##__Options__: python 1_ContigFiltStats.py --help
# This script is intended to remove transcripts below or above a given
# size range from a transcriptome assembly.
########################################################################################
## This script is intended to remove transcripts below or above a given
## size range from a transcriptome assembly.
##
## Prior to running this script, ensure the following:
## 1. You have assembled your transcriptome and COPIED the 'assembly' file
## (contigs.fasta, or scaffolds.fasta) to the PostAssembly Folder
##
## COMMAND Example Below
##
## E-mail Xyrus (author) for help if needed: maurerax@gmail.com
##
## Next Script(s) to Run:
## AutoBactVsEuk.py (removes SSU then Bact) or 2a_removeSSU.py then 2b_removeBact.py
##
########################################################################################
# Prior to running this script, ensure that you have assembled your
# transcriptome and renamed the assembled transcripts in the format of
# rnaSpades. Each file name should be of the format
# Op_me_Hsap_assembledTranscripts.fasta, replacing "Op_me_Hsap" with the
# 10-digit taxon identifier of your choice. See example data on the GitHub
# for reference.
import argparse, os, sys