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Godwin Ani 2024-01-12 11:13:28 -05:00 committed by GitHub
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Utilities/for_taxonomy/get_taxonomy.py
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@ -1,3 +1,12 @@
'''
#Author, date: Uploaded by Adri Grow, 2023
#Intent: To get the NCBI taxonomic classification of organisms.
#Dependencies: Python3, esearch
#Inputs: Spreadsheet with ten digit codes in the first column and the genus and species names in the second column.
#Outputs: Spreadsheet with taxonomy.
#Example: python get_taxonomy.py --input_file <path to .csv file>
'''
import os
import sys
from subprocess import check_output
@ -176,4 +185,4 @@ def main():
#add_to_seq_count_spreadsheet()
main()
main()