YuuMJ1997/EukPhylo
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Godwin Ani 2025-03-05 16:12:21 -05:00 committed by GitHub
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@ -11,10 +11,8 @@ EukPhylo is an updated version of the PhyloToL pipeline from the [Katz Lab](http
The docker file can be executed with: The docker file can be executed with:
```bash ```bash
cd EukPhylo
# Build the container # Build the container
docker build -f Dockerfile . --tag MyEuk:1 docker build -f Dockerfile.txt . --tag eukphylo:1
# Get the container IMAGE_ID # Get the container IMAGE_ID
docker image list docker image list
@ -24,7 +22,7 @@ docker run -it \
--mount type=bind,src=$(pwd)/databases,dst=/Databases \ --mount type=bind,src=$(pwd)/databases,dst=/Databases \
--mount type=bind,src=$(pwd)/input_data,dst=/Input_data \ --mount type=bind,src=$(pwd)/input_data,dst=/Input_data \
--mount type=bind,src=$(pwd)/output_data,dst=/Output_data \ --mount type=bind,src=$(pwd)/output_data,dst=/Output_data \
{IMAGE_ID} eukphylo
``` ```
After development, GitHub CICD workflows can be added to automatically build and release the dockerfile for the end user. After development, GitHub CICD workflows can be added to automatically build and release the dockerfile for the end user.