YuuMJ1997/EukPhylo
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Update README.md

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Godwin Ani 2025-03-05 16:12:21 -05:00 committed by GitHub
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@ -11,10 +11,8 @@ EukPhylo is an updated version of the PhyloToL pipeline from the [Katz Lab](http
The docker file can be executed with:
```bash
cd EukPhylo
# Build the container
docker build -f Dockerfile . --tag MyEuk:1
docker build -f Dockerfile.txt . --tag eukphylo:1
# Get the container IMAGE_ID
docker image list
@ -24,7 +22,7 @@ docker run -it \
--mount type=bind,src=$(pwd)/databases,dst=/Databases \
--mount type=bind,src=$(pwd)/input_data,dst=/Input_data \
--mount type=bind,src=$(pwd)/output_data,dst=/Output_data \
{IMAGE_ID}
eukphylo
```
After development, GitHub CICD workflows can be added to automatically build and release the dockerfile for the end user.