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Updating header wrapper.py

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Auden Cote-L'Heureux 2025-01-19 10:55:37 -05:00 committed by GitHub
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1 changed files with 3 additions and 3 deletions
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PTL1/Genomes/Scripts/wrapper.py
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@ -1,7 +1,7 @@
# Last updated Sept 2023 # Last updated Sept 2023
# Author: Auden Cote-L'Heureux # Author: Auden Cote-L'Heureux
# This script is a WRAPPER for the PhyloToL Part 1 GENOMES pipeline. Users should # This script is a WRAPPER for the EukPhylo Part 1 GENOMES pipeline. Users should
# use this script to run the pipeline, rather than running any of the sub-scripts (number 1a through 5b) # use this script to run the pipeline, rather than running any of the sub-scripts (number 1a through 5b)
# independently. To run an individual step in the pipeline, use --script X where X is the number (1 through 5). # independently. To run an individual step in the pipeline, use --script X where X is the number (1 through 5).
# To run multiple sets (usually all of them), use --first script 1 --last_script 5, or whichever first # To run multiple sets (usually all of them), use --first script 1 --last_script 5, or whichever first
@ -19,8 +19,8 @@ import CheckSetup
def get_args(): def get_args():
parser = argparse.ArgumentParser( parser = argparse.ArgumentParser(
prog = 'PhyloToL v6.0 Part 1 for GenBank Genomes', prog = 'EukPhylo Part 1 for GenBank Genomes',
description = "Updated January 19th, 2023 by Auden Cote-L'Heureux. Link to GitHub: https://github.com/AudenCote/PhyloToL_v6.0" description = "Updated January 19th, 2023 by Auden Cote-L'Heureux. Link to GitHub: https://github.com/Katzlab/EukPhylo"
) )
parser.add_argument('-s', '--script', default = -1, type = int, choices = { 1, 2, 3, 4, 5 }, help = 'Script to run if you are only running one script') parser.add_argument('-s', '--script', default = -1, type = int, choices = { 1, 2, 3, 4, 5 }, help = 'Script to run if you are only running one script')