Entrypoint file

Other/entrypoint.sh

@@ -0,0 +1,23 @@
+#!/bin/bash
+
+# Default mode
+MODE="transcriptomes"
+
+# Parse command-line arguments
+while [[ "$#" -gt 0 ]]; do
+    case $1 in
+        --mode) MODE="$2"; shift ;;  # Read the next argument as the mode
+        *) echo "Unknown parameter: $1"; exit 1 ;;
+    esac
+    shift
+done
+
+# Run the appropriate script based on the mode
+if [[ "$MODE" == "transcriptomes" ]]; then
+    exec /EukPhylo/PTL1/Transcriptomes/Scripts/wrapper_submit.sh
+elif [[ "$MODE" == "genomes" ]]; then
+    exec /EukPhylo/PTL1/Genomes/Scripts/wrapper_submit.sh
+else
+    echo "Invalid mode: $MODE. Use --mode transcriptomes or --mode genomes."
+    exit 1
+fi