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Katzlab 2024-01-20 16:18:22 -05:00 committed by GitHub
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PTL1/Transcriptomes/Scripts/1b_CrossPlateContamination.py
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@ -7,6 +7,10 @@
# plate. This script is optional, but to be run as part of the
# PhyloToL version 6 Part 1 pipeline using the script wrapper.py
# The specifics of parameters are described below and include removing seqs 1/10
# the coverage of the most highly expressed, and keeping all seqs with coverage >50.
# All of these parameters can be changed by users.
# Before running this script, you must run Script 1a. The default
# clustering parameters are below, decided upon after manual inspection
# of results from sample data under multiple parametrizations, but are