YuuMJ1997/EukPhylo
1
0
Fork 0
mirror of http://43.156.76.180:8026/YuuMJ/EukPhylo.git synced 2025-12-28 06:40:24 +08:00
Code Issues Packages Projects Releases Wiki Activity

Updating header

Browse Source
This commit is contained in:
Katzlab 2024-01-20 16:18:22 -05:00 committed by GitHub
parent 4b1197eaee
commit 5c6573e0f9
No known key found for this signature in database
GPG Key ID: B5690EEEBB952194
1 changed files with 4 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
PTL1/Transcriptomes/Scripts/1b_CrossPlateContamination.py
View File

@ -7,6 +7,10 @@
# plate. This script is optional, but to be run as part of the # plate. This script is optional, but to be run as part of the
# PhyloToL version 6 Part 1 pipeline using the script wrapper.py # PhyloToL version 6 Part 1 pipeline using the script wrapper.py
# The specifics of parameters are described below and include removing seqs 1/10
# the coverage of the most highly expressed, and keeping all seqs with coverage >50.
# All of these parameters can be changed by users.
# Before running this script, you must run Script 1a. The default # Before running this script, you must run Script 1a. The default
# clustering parameters are below, decided upon after manual inspection # clustering parameters are below, decided upon after manual inspection
# of results from sample data under multiple parametrizations, but are # of results from sample data under multiple parametrizations, but are