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Updating header in 4_CountOGsDiamond.py

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Auden Cote-L'Heureux 2024-01-26 11:36:32 -05:00 committed by GitHub
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PTL1/Genomes/Scripts/4_CountOGsDiamond.py
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@ -1,18 +1,13 @@
#!/usr/bin/env python3.5 # Last updated Sept 19th 2023
# Author: Xyrus Maurer-Alcala
##__Updated__: 18_09_2023 (by ACL) # This script classifies translated CDS into gene families by
##__Author__: Xyrus Maurer-Alcala; maurerax@gmail.com # similarity-searching using Diamond against a reference database of
##__Usage__: python 3g_GCodeTranslate.py --help # gene families. We provide the Hook database on the GitHub, but this
# may be replaced with a custom reference database by REPLACING the
############################################################################## # .dmnd and .fasta files in the Databases/db_OG folder. This script
## ## # is intended to be run as part of the PhyloToL 6 Part 1 pipeline using
## This scrip will categorize TRANSLATED CDSs into Homologous Gene Families ## # the script wrapper.py.
## ##
## Questions about Gene Family Binning/Source? SEE NOTES at Bottom! ##
## ##
## E-mail Xyrus (author) for help if needed: maurerax@gmail.com ##
## ##
##############################################################################
import argparse, os, re, sys import argparse, os, re, sys
from argparse import RawTextHelpFormatter, SUPPRESS from argparse import RawTextHelpFormatter, SUPPRESS