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MCLeleu 2024-08-14 16:36:38 +02:00 committed by GitHub
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45
PTL2/Examplar_runs/Running_CLoop/CladeGrabbing/all_forams.txt Normal file
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@ -0,0 +1,45 @@
Sr_rh_ArpA
Sr_rh_As01
Sr_rh_As11
Sr_rh_As25
Sr_rh_AspA
Sr_rh_Bost
Sr_rh_Bspi
Sr_rh_Bv01
Sr_rh_Bv03
Sr_rh_Calb
Sr_rh_Cosp
Sr_rh_El02
Sr_rh_Emac
Sr_rh_Emar
Sr_rh_Esca
Sr_rh_Gl02
Sr_rh_Gpac
Sr_rh_Gsp1
Sr_rh_Hg01
Sr_rh_HgpA
Sr_rh_Hhir
Sr_rh_Hind
Sr_rh_Lvor
Sr_rh_Mf01
Sr_rh_Mf02
Sr_rh_Nn01
Sr_rh_Nn10
Sr_rh_Pbet
Sr_rh_Ph16
Sr_rh_Ph19
Sr_rh_Ph24
Sr_rh_PspA
Sr_rh_Qj01
Sr_rh_QjpA
Sr_rh_RspA
Sr_rh_Slin
Sr_rh_Spsu
Sr_rh_Ss02
Sr_rh_Ss03
Sr_rh_Tr01
Sr_rh_Tr02
Sr_rh_Ts02
Sr_rh_Tsp1
Sr_rh_Tx01
Sr_rh_Ustr

9
PTL2/Examplar_runs/Running_CLoop/CladeGrabbing/cercozoa.txt Normal file
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@ -0,0 +1,9 @@
Sr_rh_Gspa
Sr_rh_Lamo
Sr_rh_Blon
Sr_rh_Bna2
Sr_rh_Crep
Sr_rh_Nsph
Sr_rh_Pglo
Sr_rh_Erot
Sr_rh_Pami

23
PTL2/Examplar_runs/Running_CLoop/CladeGrabbing/clade_grabbing_rules.txt Normal file
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@ -0,0 +1,23 @@
Am 0.1 11 NA 0
Am_ar 0 3 NA 0
Am_di 0 3 NA 0
Am_my 0 4 NA 0
Am_tu 0.1 7 NA 0
EE_cr 0.1 11 NA 0
EE_ha 0.1 9 NA 0
Ex 0.1 8 NA 0
Ex_eu 0.1 9 NA 0
Ex_fo 0 3 NA 0
Ex_pa 0 3 NA 0
Op 0.1 11 NA 0
Op_fu 0.1 11 NA 0
Op_me 0.1 11 NA 0
Pl_gl 0 3 NA 0
Pl_gr 0.1 13 NA 0
Pl_rh 0.1 9 NA 0
Sr_ap 0.1 6 NA 0
Sr_ci 0.1 13 lkh_ciliates.txt 1
Sr_di 0.1 11 NA 0
Sr_st 0.1 11 NA 0
Sr_rh 0.1 7 cercozoa.txt 5
all_forams.txt 0.1 11 lkh_forams.txt 1

21
PTL2/Examplar_runs/Running_CLoop/CladeGrabbing/exceptions.txt Normal file
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Am_ev
Am_is
Am_th
EE_an
EE_ap
EE_br
EE_ce
EE_is
EE_pr
EE_rh
Ex_is
Ex_ja
Ex_ma
Ex_me
Ex_ox
Op_ap
Op_ic
Op_nu
Sr_ch
Sr_co
Sr_pe

12
PTL2/Examplar_runs/Running_CLoop/CladeGrabbing/lkh_ciliates.txt Normal file
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@ -0,0 +1,12 @@
Sr_ci_Tp05
Sr_ci_Ty13
Sr_ci_Si09
Sr_ci_Sc02
Sr_ci_Eu04
Sr_ci_Tn01
Sr_ci_Hx49
Sr_ci_Sx06
Sr_ci_Sa01
Sr_ci_Lx03
Sr_ci_Lx74
Sr_ci_Ls01

22
PTL2/Examplar_runs/Running_CLoop/CladeGrabbing/lkh_forams.txt Normal file
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@ -0,0 +1,22 @@
Sr_rh_AspA
Sr_rh_RspA
Sr_rh_Mf01
Sr_rh_Mf02
Sr_rh_Qj01
Sr_rh_QjpA
Sr_rh_Tr01
Sr_rh_Tr02
Sr_rh_Ss02
Sr_rh_Ss03
Sr_rh_ArpA
Sr_rh_Ph16
Sr_rh_Ph19
Sr_rh_Ph24
Sr_rh_PspA
Sr_rh_El02
Sr_rh_Hg01
Sr_rh_HgpA
Sr_rh_As01
Sr_rh_As11
Sr_rh_As25
Sr_rh_Ts02