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updating header in 5_GCodeTranslate.py

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Auden Cote-L'Heureux 2025-01-19 11:02:24 -05:00 committed by GitHub
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1 changed files with 2 additions and 2 deletions
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PTL1/Transcriptomes/Scripts/5_GCodeTranslate.py
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@ -4,7 +4,7 @@
# This script is intended to translate nucleotide sequences. It does this using # This script is intended to translate nucleotide sequences. It does this using
# the gcode_output.tsv file output by script 4 and containing in-frame stop codon # the gcode_output.tsv file output by script 4 and containing in-frame stop codon
# frequencies. The user can use this stop codon information to fill in the last # frequencies. The user can use this stop codon information to fill in the last
# column in this file with the genetic code for each taxon. If the user input a # column in this file with the genetic code for each taxon, as outlined in the Wiki on Github. If the user input a
# genetic code or list of genetic codes to script 1, then the gcode_output.tsv will # genetic code or list of genetic codes to script 1, then the gcode_output.tsv will
# be filled automatically. sequences are translated using the Diamond BLASTp results # be filled automatically. sequences are translated using the Diamond BLASTp results
# from OG assignment as a starting point for determining coding sequence boundaries. # from OG assignment as a starting point for determining coding sequence boundaries.
@ -14,7 +14,7 @@
# of transcriptomic data, poor genetic code assignment or low-quality/partial data can # of transcriptomic data, poor genetic code assignment or low-quality/partial data can
# interfere with this process). # interfere with this process).
# This script is intended to be run using the wrapper.py as part of the PhyloToL 6 Part 1 # This script is intended to be run using the wrapper.py as part of the EukPhylo Part 1
# pipeline. It requires that the setup of the 'Output' folder be that as output by script 4 # pipeline. It requires that the setup of the 'Output' folder be that as output by script 4
# of this pipeline. # of this pipeline.