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Godwin Ani 2024-01-12 10:06:18 -05:00 committed by GitHub
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1 changed files with 3 additions and 3 deletions
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Utilities/for_MSAs/gappiness.py
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@ -3,7 +3,7 @@
#Intent: To use the gappyness stats in filtering paralogs. #Intent: To use the gappyness stats in filtering paralogs.
#Inputs: A folder of alignment files #Inputs: A folder of alignment files
#Outputs: A spreadsheet of the gappyness stats #Outputs: A spreadsheet of the gappyness stats
#Example: python faralog.py --alignment /Path/to/alignments --code ten digit code #Example: python gappiness.py --alignment /Path/to/alignments --code ten digit code
#Dependencies #Dependencies
import os, sys, re import os, sys, re
@ -16,11 +16,11 @@ import argparse
parser = argparse.ArgumentParser( parser = argparse.ArgumentParser(
prog = 'F/paralog assessment script', prog = 'gappiness assessment script',
description = "Updated November 7, 2023 by Godwin Ani.") description = "Updated November 7, 2023 by Godwin Ani.")
parser.add_argument('-a', '--alignment', help = 'The alignment files folder') parser.add_argument('-a', '--alignment', help = 'The alignment files folder')
parser.add_argument('-c', '--code', help = 'The ten digit code for f/paralog assessment') parser.add_argument('-c', '--code', help = 'The ten digit code for gappiness assessment')
args = parser.parse_args() args = parser.parse_args()