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Godwin Ani 2024-01-12 10:06:18 -05:00 committed by GitHub
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Utilities/for_MSAs/gappiness.py
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@ -3,7 +3,7 @@
#Intent: To use the gappyness stats in filtering paralogs.
#Inputs: A folder of alignment files
#Outputs: A spreadsheet of the gappyness stats
#Example: python faralog.py --alignment /Path/to/alignments --code ten digit code
#Example: python gappiness.py --alignment /Path/to/alignments --code ten digit code
#Dependencies
import os, sys, re
@ -16,11 +16,11 @@ import argparse
parser = argparse.ArgumentParser(
prog = 'F/paralog assessment script',
prog = 'gappiness assessment script',
description = "Updated November 7, 2023 by Godwin Ani.")
parser.add_argument('-a', '--alignment', help = 'The alignment files folder')
parser.add_argument('-c', '--code', help = 'The ten digit code for f/paralog assessment')
parser.add_argument('-c', '--code', help = 'The ten digit code for gappiness assessment')
args = parser.parse_args()