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Updating header in 1b_CrossPlateContamination.py

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Auden Cote-L'Heureux 2024-01-16 14:04:06 -05:00 committed by GitHub
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PTL1/Transcriptomes/Scripts/1b_CrossPlateContamination.py
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# Last updated 2/23/2022 # Last updated 2/23/2022
# Authors: Jean-David Grattepanche and Auden Cote-L'Heureux
# This script is intended to remove intra-plate contamination # This script is intended to remove intra-plate contamination
# by removing sequences with low coverage relative to other # by removing sequences with low coverage relative to other
# very similar sequences from samples sequenced on the same # very similar sequences from samples sequenced on the same
# plate. # plate. This script is optional, but to be run as part of the
# PhyloToL version 6 Part 1 pipeline using the script wrapper.py
# Before running this script, you must run Script 1a. # Before running this script, you must run Script 1a. The default
# clustering parameters are below, decided upon after manual inspection
# of results from sample data under multiple parametrizations, but are
# free to be changed by the user.
#Dependencies #Dependencies
import sys import sys