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Update CUB.py

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Godwin Ani 2024-07-19 12:53:21 -04:00 committed by GitHub
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Utilities/for_fastas/CUB.py
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#Inputs: Fasta file or folder of fasta files #Inputs: Fasta file or folder of fasta files
#Outputs: A fasta file filtered for properly formatted sequences and several spreadsheets summarizing GC, ENc, RSCU, etc. #Outputs: A fasta file filtered for properly formatted sequences and several spreadsheets summarizing GC, ENc, RSCU, etc.
#Example: python3 CUB.py -i seqs.fasta #Example: python3 CUB.py -i seqs.fasta
#Note: Use "python3 CUB.py -i seqs.fasta --require_start --require_stop" when using the on R2G files.
#Dependencies #Dependencies
import os import os