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Godwin Ani 2024-01-12 11:26:02 -05:00 committed by GitHub
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Utilities/for_taxonomy/readmapping.py
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'''
#Author, date: Uploaded by Adri Grow, 2023
#Intent: map a group of trimmed reads to a reference.
#Dependencies: Python3, hisat2, samtools, sambamba
#Inputs: Folder named 'TrimmedReads' containing all the trimmed reads.
#Outputs: Folders with the names of the LKHs containing the sam/bam files.
#Example: python readmapping.py
'''
#python week 6 #python week 6
#map a group of trimmed reads to a reference #map a group of trimmed reads to a reference
#IMPORTANT: Please read commented-out (grey) notes. They will tell you where you need to edit the script. #IMPORTANT: Please read commented-out (grey) notes. They will tell you where you need to edit the script.