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Update wrapper_submit.sh

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Updated modules for current grid use.
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Adri K. Grow 2024-11-11 21:19:16 -05:00 committed by GitHub
parent f2701e7f65
commit dcf4079b86
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1 changed files with 6 additions and 6 deletions
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PTL1/Transcriptomes/Scripts/wrapper_submit.sh
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@ -13,16 +13,16 @@ module purge #Cleans up any loaded modules
module use /gridapps/modules/all #make sure module locations is loaded
module load slurm
module load tqdm
module load Biopython/1.75-foss-2019b-Python-3.7.4
module load BLAST+/2.9.0-gompi-2019b
module load DIAMOND/0.9.30-GCC-8.3.0
module load VSEARCH/2.21.1-GCC-10.3.0
module load tqdm/4.62.3-GCCcore-11.2.0
module load Biopython/1.79-foss-2021b
module load BLAST+/2.12.0-gompi-2021b
module load DIAMOND/2.0.13-GCC-11.2.0
module load VSEARCH/2.22.1-GCC-11.3.0
parent='/beegfs/fast/katzlab/becky/PTL1/Transcriptomes/Forams/'
srun -D ${parent}Scripts python3 ${parent}Scripts/wrapper.py -1 1 -2 7 -x --assembled_transcripts ${parent}AssembledTranscripts -o ${parent} -n ${parent}Conspecific.txt --genetic_code Universal &
#srun -D ${parent}HQ/Scripts python3 ${parent}HQ/Scripts/wrapper.py -1 2 -2 7 -x --assembled_transcripts ${parent}Plate4/Assembled_Transcripts -o ${parent}Plate4 -n ${parent}Plate4/Conspecific.txt --genetic_code ${parent}Plate4/Gcodes.txt &
#srun -D ${parent}Scripts python3 ${parent}Scripts/wrapper.py -1 1 -2 7 -x --assembled_transcripts ${parent}Assembled_Transcripts -o ${parent} -n ${parent}Conspecific.txt --genetic_code ${parent}Gcodes.txt > log.out &
#srun -D ${parent}HQ/Scripts python3 ${parent}HQ/Scripts/wrapper.py -1 2 -2 7 -x --assembled_transcripts ${parent}Plate7/Assembled_Transcripts -o ${parent}Plate7 -n ${parent}Plate7/Conspecific.txt --genetic_code ${parent}Plate7/Gcodes.txt &
#srun -D ${parent}HQ/Scripts python3 ${parent}HQ/Scripts/wrapper.py -1 1 -2 7 -x --assembled_transcripts ${parent}Plate11/Assembled_Transcripts -o ${parent}Plate11 -n ${parent}Plate11/Conspecific.txt --genetic_code ${parent}Plate11/Gcodes.txt &
#srun -D ${parent}HQ/Scripts python3 ${parent}HQ/Scripts/wrapper.py -1 2 -2 7 -x --assembled_transcripts ${parent}Plate18/Assembled_Transcripts -o ${parent}Plate18 -n ${parent}Plate18/Conspecific.txt --genetic_code ${parent}Plate18/Gcodes.txt &