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Added PTL2 Scripts

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These are PTL2 files from Auden 2/9
This commit is contained in:
Katzlab 2023-02-14 11:20:52 -05:00
parent 18e07170be
commit dd76ab1d12
2151 changed files with 2517388 additions and 0 deletions
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>Sr_st_Pinf_XX_002901480_Contig_6403_Len1230_OG5_126946
MKMPSALSFEVLGRHHRARAATLTLPHGEVRTPVYMAVGTQGAIKGLTTQQMQEQPVDCQIFLANTYHLALRPGTEVLAQLPGKLHEFMQWPRNLLTDSGGFQMVSLSRLCQVSEHGVQFESFVDGSTMLLTPEASIAHQNRIGADIIMALDDVVSSLTDDDERFKEACGRTVRWLDRCIQAHAHPDKQNLFGIVQGGLDVSEGGLRDQCLTELIKRDLPGYAIGGLAGGESKEAFWKVVAKCTAQLPENKPRYLMGVGYPLDLVVCSALGVDMFDCVYPTRTARFGTAIVPSGLLKLKSAKCELDSRPIDDTCECFVCKKYTRAYLRVLLKKEETFGDAEATTGSIGAHLVTYHNVTYMLNLMRRLRQSIIDRKFEQFVQNFMLQQFPERNYPQWAVDALTEAKISLN
>Am_tu_Hpap_XX_Contig_6294_Len585_Cov1_OG5_126946
CLAEFQKRDLPGYAIGGLSGGESKDEFWKIVSQCTSKLPSNKPRYLMGVGFPVDLVVCVALGVDMFDCVYPTRTARFGTALVPTGAINLKLTIYANDFRPVDETCSCLTCHGYTRAFLHSKSRGDSIGAVLLSYHNIAYQLRLMGELRQSIIEGQFSKYVQQFMLKQFPKMDYPKWVVDSLGSVGISLHTTVSQ
>Sr_ci_Ptet_XX_001454454_Contig_8002_Len1797_OG5_126946
MYNGMNMYHTLENWQSIKCTIQVQQRTVSVMLQNLPFKDPNKKGNPNLESLKVKFILIPDTYIEGVVGQRIQLKVYEADLCIRFPNVRYLSKGDPYVTFFLTEDMERNYNWKIKKRLSNIQLVNDKFDLENKSYCQKLQFNKLDLFKNQVSRLTLFIIFYTSVYFPIFSTQNIFFSNIFNLIYHLIQQIMQELGDIENQPHKKVKTNETPLEFTVLATHNFARASIMRLPHGEVLTPVYMPVGTKGAMKGVTYSEMDDLGCKLLLANTYHLAYKPGGNLLEKVGGLHNFVNWKHNILTDSGGFQMVSLSQLSEVTEEGVTFESPYDKSTMHLRPEDSIHTQNQIGADIIMALDDVVRTTTVGPRMQEASERTTRWLDRDIAAHKRKHDQNLFPIVQGGIDPKLREQSLNDLIQREANGYAIGGLAGGEDKVDFWKTVAQCTATLPVNKPRYLMGVGYPVDVVVCSCLGVDMFDCVFSTRTARFGTAFTDNGFLKLKNKEAANVFEPIQKGCQCQACKSYTQSYIHYLIAREEVACHLISVHNLNYLIQLMLNLRQSIIDGKLIEFINEFLKKWFKNEGQIPVWIIEALEYAKIPVEQL
>Sr_st_Bhom_XX_012897755_Contig_1728_Len1251_OG5_126946
MKYDTPALVFDIVKKWNRARASVMTLRHGPVLTPVFMPVGTKGTIKGLTPDQMRDEPMDCQILLGNTYHLSSKPGAQEVADFGGLHKFMQWDRNILTDSGGFQMVSLLDLAEITENGVVFRHPADGSRLVLRPEDSIHYQNLIGADIIMALDDVVHSCTNDDARFTEATHRTVRWLDRCIAAHSRKDEQNLFAIVQGGLDVSDNGLRNQCLDAFLERADSIPGFAIGGLAGGEDKESFWRVVELCTRRLPADKPRYVMGVGYPLDIVVCTALGADMYDCVYPSRTGRFGTAMVPWGLLKLKSKACAEDLRPIDPDCTCRTCKNYSRAALHQLCKKEALGASLVTEHNLHYMIHFMREMRMSIIEGRFDAFVREFMRKYFPKGDVPKWCVDALRVAGIDLVESSSVCVQTEEIMDWM
>Ba_ba_Bcae_XX_065538610_Contig_1463_Len1131_OG5_126946
MTFELQYTDTKSNARAGLITTDHGQIQTPIFMPVGTLGTVKGVHLTELKEDIQAQIILGNTYHLYLRPGLDVIEKAGGLHRFNGFDRPMLTDSGGFQVFSLAGIRKLREEGAEFRSHIDGNKHIFTPEKVIDIERTIGADIMMAFDECPPGDSDYEYAKKSLGLTHRWLDRCIQRFNETEPKYGYKQALFPIVQGCVYPDLRKQSAEFIASKGAEGNAIGGLAVGEPVDKMYEMIEIVNEILPKDKPRYLMGVGTPVNILEGIERGVDMFDCVMPTRNGRNGMLFTKDGIINMRNKKWETDFSPIEADGASSVDTLYSKAYLRHLFHAQELLAMQIASIHNLAFYLWLAGEARKHIIAGDFSTWKPMMVKRVSTRL
>Am_tu_He47_XX_Am_tu_He47-LKH612_4233_Len1044_Cov6_OG5_126946
DQLSSLGPPIILGNTYHLGHRPGPEVLSKMGGLHTFMGWNKNILTDSGGFQMVSLLKLADITEEGVKFESPHDGSELLLTPEKSIQIQNEIGADIIMALDDVVSSTITGPRVEEAMHRTIRWIDRCIAAHRRPHDQNLFGIIQGGLSSHLRDICLAEFKKRDLPGYAIGGLSGGESKDEFWKIVSQCTSNLPSNRPRYLMGVGFPVDLVVCVALGVDMFDCVYPTRTARFGTALVPTGTLNLKLTIYANDFRPVDETCSCLTCRSYTRAFIHCKSRGDTIGAVLLSYHNIAYQLRLMGELRQSIIEGQFSKYVQQFMIKQFPKMDYPKWTLDALDSVGISLLTTMTE
>Sr_rh_Blon_XX_Contig_15473_Len669_Cov5_OG5_126946
RTLRWIDRCIKAHKNKHRQNLYGIVQGGLDAKLRDYSLKEMIKRDLPGYAIGGLAGGEDKALFWRVVKQCCDVLPKDKPRYLMGVGYTLDLVVCSALGCDQFDCVYPARTARFGTAMTSEGLIPLKKRKYSCDNRILDPTTSVGRNYTRGFLHEALKESTGCQLLTMHNIEFLQNFMKRLRASIRDGTFPDFVRDFMKREHPDGKYPQWAVNALRAAGIALT
>Sr_rh_Blon_XX_Contig_7214_Len969_Cov5_OG5_126946
AGTQLMFCNTYHLIVHPGADVVEKAGGLHKFMNRSSPIITDSGGFQVFSLAEATSEDGDELKSRGNKRSTGSLLKVSEDGVLFRSYFDGSKISLTPEGSVRAQKMLGADIIVPLDELPPYHVTAKRLKESVYLSHRWEARSLKEHLKNPQQQAMYAVIHGGVDRELRKLSAEYLSSLPFDGFAVGGSLGKDRREMAELLQYVMPLLPEDRPSHVLGIADTESIESTVSFGCDTFDSAYPTRVARHGTLFTTDGLIHIKLSRFKEDYGSIDPKLETIPYSRSYLHHLLRAKEPLFLTLASLHNMIYMNKMMADIRERILRDEI
>Op_me_Bplu_XX_Contig_9582_Len1137_Cov7_OG5_126946
KCKHTKARVSVLRLPHGVVDTPVFMPVATKGTLKGLTTKQINELNCQIILGNTFHLGSKPGVNILNQKNGLHGLMNFDNNILTDSGGFQMVSLLKLSHVTEDGVTFNHPDTNEEIVLTPEHSMEIQMSLKSDIIMQLDDTVSSLTTGERVSIAMQRSIRWLDRCINVVAKSINQNLFPIVQGGLDINLRTECINEMLKRNLPGYAIGGLSGGEMKESFVKIVDHCTNMLPTSKPRYLMGVGYAPELVICTALGCDMFDCVYPTRTARFGTALINHVNNLQISHFSNKNDLNPIDSSCTCTTCKKYSRAYLHSLFVTNNPVVLSLLTVHNITYQKRLMESIKLSIIEDRFVEFIHIFFKSYFDEIPIWVDKFLTTLIDC
>Za_ec_Maeo_XX_011973592_Contig_63_Len1959_OG5_126946
MFEIKHRDAMGRIGKLKINGKIIETPTIMPVVHPNPKKQTVSIEKIEKLASVIITNSYIINTNPELKKIAEEKGIHNLIGFDKVIVTDSGSFQLSVYGEITVEPEEIIEFQEKIGVDVGTILDIPTAPYVQREQAEEELKETLRRAELSVKLRDEKNYKLLLNGTIQGSTYMDLRQESAKKMKELDFDIYPIGAVVPLMENYDYAQVIEIILNSKKELPTNKPVHLFGCGHPMMFALSVALGCDLFDSAAYALYAKDGRYLTESGTLHLEDLKDLEKFPCSCPVCIEYTPKELAKMEKRKRTELLAEHNLYITFEEINRIKQAIKDGNLWELVEERCRAHPKLLEAYRKALEYNEFIEEFDPITKKSAFFYGGYESLYRPEIIRHKKRLERIKSDNIYITTISNDINRPYSENTNMMDSDALVLIKDDLFGLVPLSIDTVYPLSQCDNPKLYCYEKIHNNEFVEEFKQNNKDKIMDITSYNYYINHYTSNANKNKVGSDAIRINNMIQYQYGFKLNDEELKKLIIKRSKKTNRIRNVLIPTDGNNKEVLFTLRSNDNLLIPAKEGAKLIHEKLPFPKYRVVIDSEVEEFARDGKSVFSKFVINCDKELRPYEEVIIVNENDELLAYGTTLLNGKELGEFNYGAAVSVRSGFK
>Za_et_Tkod_XX_011249711_Contig_141_Len1743_OG5_126946
MVDFRFEVKARDASGRIGKLTVNGKTVETPAIMPVINPKQLIVTPKELKEMGFGMIITNSYIIYKTPELREKALEVGIHKLLDYDGIIEVDSGSFQLMRYGGVEVTNREIVEFQHEIGVDIGTFLDIPTPPDAPREKAEEDLRITLERAKEAEEIKEIAMNAAVQGSTYPDLRTYAARELSRMNFEIHPIGAVVPLMESYRYRDLVDVVIASKVGLRPDRPVHLFGAGHPMIFALAVAMGIDLFDSASYALYAKDDRYMTPEGTKRLEELEYFPCSCPVCSRYTPQELREMPKEERTRLLAIHNLWVIREELNRVKQAIKEGELWRLVDERARSHPKLYAAYKRLLEYREYLEKNEPVTKASAFFKVSEEALRWPIVERARERAERVRSKFPETISHPIFGEIPKYLSLSYPFAQSEGEEDFTVEKPEKGEARKYVMAVAEYQFGEGAGEAFKDAFVELSRKTGMPRQIKAKGKHLATFRAEDGLLTLGIEGAKRLHEVLPFPRMRVVVDEDAEPFARRGKNVFAKFVVDADLNIRPYDEVLVVNRNDELLATGQTLLNGEELKIFQQGLAVKVRRGVEK
>Za_as_Loki_XX_KKK40305_Contig_418_Len1653_OG5_126946
MRWEILDTDALGRIGKLEIKGKKMDTPNLFPVLHPYKNIISSSEFKKIGAQCVFTNSYIIHQNANVKEQVLKRGLHKYLEFDGIIATDSGAFQQYMYNNTDFEINAEEIERFQELIRSDFPVILDLPVQPNDDYDTVKKKIITTIDRAKNNIDRRTNPDCIWFGPIHGAKYLDLLEFSTVEMSKLDFGILALGGLVKYFLNYRYDLVLKALLTVKKASISNRPLHLFGLGLPQFFSLAILCGCDLMDSAAYVLYAKENRYFTLSTGTKQLDELDEFPCTCPICLEYTPKELRSLDKVKQTELLAKHNLYISFAELRTIRQAIKEGNLWELVEQRIRSHPTLVNALKSIKDNVALFEIHEKIYKPHGRLFVSSDSVNRPLIYRYVLKLNQYYRPPRCGKFLIILPELDVKGEYSPSIKNWLENINENSIIPRKLLHVVFLSDFFGIIPLELSYTFPMGQSELIVLQEKENVAFQSTVKKVGTYLNTNLKHYDMCGLFIPDKIINQFNEITEFTKTGLMEKITPLLKSKFNSKFTISNEITQLLQFFKESLQ
>Ba_cd_Cavi_XX_020356259_Contig_285_Len1119_OG5_126946
VALKFHVLHQSKKSQARVCQIETAHGTIDTPAFVPVATNGALKGVLDHSRIPLMFCNTYHLLVHPGTQHIAAMGGLHKFINRHAPIITDSGGFQIFSLAYGSVTEEIKSKGKKKHSSSILNITDDGVWFKSYRDGSKLFLSPETSVQAQKDLGADIIIPLDELLPFHTDTNYFLSSCSRTYIWEKRSLDYHRQSPGYQSMYGVIHGGIDPKQRKIGCQFVEEHPFDGFAIGGSLGRNFQEMVNVVDITMRYLSKDRPVHLLGIGDLPSIRAAVKFGIDSFDSSYPTKIARHGLILSSPKPIKIDNHAYSQDPTPIDPNCHCLTCTSNISKAYLHHLFKVHEPNAGIWASIHNLHYMQEVMKTIREQILNDEI
>Ba_cy_Smaj_XX_072620615_Contig_1298_Len1152_OG5_126946
MSSPVASAFQFHIDATCSQTQARAATFQTPHGIVETPRFMPVGTVGTIKGLTPAQVEATQAQMILANTYHLHLQPGEALVQAAGGLHQFMGWQQPILTDSGGFQVFSLSKLRKLTEDGVTFQSPRDGRKIHFTPEKSIQIQNALGADVIMAFDECPPYPATREAVEAATQRTFRWLERSIAAHERPQDQALFGIVQGGIYPDLRIEAAQQLVALDLPGYAIGGVSVGEPPELMYPVVEATTPILPAHKPRYLMGMGTYREMVRAIAAGIDLFDCVIPTRFGRHGTAMVQGERLNLKNAQFREDFTPLDPTCPCYCCTTFSRAYLNHLVKAKEMLAYILLSLHNVTELVRFTQQIRASILSDRFVEDFGPWLTDPDPKDCGQAD
>Am_ar_Mabd_XX_Contig_8695_Len1002_Cov4_OG5_126946
DQLKRLGGLHKFMRWPNAILTDSGGFQMVSLCKLSNVTEEGVTFQSPRDGNMSLLTPERSMEIQMAIGSDIIMALDDVVRPTDDAKRIAEASERTVRWLDRCCATLPNRGHGPTQSLFAIVQGGLDGGLRDRCLDELIKRDTPGYAIGGLAGGESKDSFWRVIAFCCERLPQNKPRYAMGIGYAEDMLVCVALGVDMFDCVYPTRTGRFGVALTDAGPLNLNQSSNSQCVDVITPGCPCNACSQGYSKACLRAMFCGPTGTEVAAQLVTHHNIAFQLGLMRRAKAAIENNTFPEFVSRWMINRYGGQLSSVPQWIHEALTHAGISMAQFVKQQ
>Sr_di_Smic_XX_OLQ08674_Contig_5990_Len4278_OG5_126946
MSIREENVKREDSDIADFMALAQSFRFRRFALSFSFSGKDIGCLELGSVSPRLPVPSEVSEQAEGRAPALPGEGASEAPASSDWRMVLYHDRNVVLFNPGEKPAFRSRRLSVDEAAPGTELSNPSGRCPLCRQTVDARFAFAAQAYFDLLQGLFRSGTRDPEGEDIDLLAESDLYRILGLPRSAKADDIKRAYRKRSLRFHPDKNPDDPDAKLKFQKVAEAFTVLSDENKRAKYDNSGDMDLEGFDVETFMEMVNAAGLKFQKQDRGSDERDGRDDFPEEVPSRSAMDRLAGLGVSDEEQGDAIAIGDGDYDANPFLLGAEASNPAEVPIFASEGGAEAQQAAAAALRHLPAGLLNTGYYVRFFQETKLLGSGSFGAVYLCRHVLDDMMLGDYAVKKVPVGDNKVWLRDMVREDAMSKRKLEDAQAEANRPSQAGRPPLVFHLEATCGRARAATVTLPHGDVLTPVFMPVGTQGTIKGMSSEDMEMLGCRILLGNTFHLANRPTCELLRKCGGLHKLMNWNGNILTDSGGFQMVSLLKLAVITEDGVEFEDPKKPGSRMLLTPEKSIESQNDIGADIMMALDDVVSSTLDPVKDEARIKEATDRTLRWIDRCMKAHRNPEQQNLFGIVQGHLDVKDGGLRDYSLKEMIKRDLPGYAIGGLSGGEAKSEFWRVVERCTRPESGLPPMKPRYLMGVGYPLDIVICVALGVDMFDCVYPCRTARFGTALVRSGQLRLTSAEFASDYRPLEPDRDGNGQGPLKDYTRAMLYTIVTKEPVAAQLITLHNLWFMLNLLQEMRQQIKSGSFPEWVRRFLQDFFPIAKPAPCEHCPPRWVKDALDLCGIAVDDLFDWSESAKELPDMPKDTGKASGLQRVALISLTGENVKTFERLHHPNIVEYKHSWLELSRRSEFCPFVPFLFILMQYCNGGSLAEQIWHDGNSQTPKDQMPTEQIWHFLLDILLGLQHLHRQGILHRDLKPTNILLSWPDNSNRGAGSEMFPRALLSDFGTAQAFGEPPASATAAASRGYTGTVEYTAPELLLMEDFEREYSEKSDMWSLGMVLYAMCFSSLPFSHDDPHVVKGLIKSFVEEKRRAAPNEKAPSAEEDASGWLPFDTGGRIGPLRLVLAALLALDARRRPAATDLLENTVFRRQARRYLRKADPAGEAQTTALPIDSSWNWLPFGLKYNMLWRKALVGCMEAVGFFARHAIRHSEKSEVPERLSSGLHKAMKAMASMKGQAVPMNVMKSMKKGLTAGTWAAAKKKAEQEEQDPVEALKLAKRIYGRQVFLERRPPAAAAAPPSFGILADLSLASIAFDAGLGTLERNAEGRYRLANGATKVNVRLPQCIEEVLGPVKDYNPKQVEEWCNSLGQVVLEKMQELSGNFKHRAQAGLRYIVNISLMEKKGAGFHTRWENKALICVVQVFGIGM
>Za_eh_Hvol_XX_004041882_Contig_388_Len1551_OG5_126946
MRDHFELRDGDLAGRIGRLSVPRAGVTVETPALLPVVNPNIDTISPARLESEFGAEILITNSYIIKTNDHLREEALDVGLHEMLDFDGAIMTDSGSFQLAEYGEIDTTTEEILQFQRDIGTDIATPVDIPTPPDVAREQAEADLEITRQALADAEAADTGEMLVNAPVQGSTYPDLREEAGRHADATDLDVFPVGAVVPMMNAYRYDDMVDAVAAAKRGLGVDAPVHLFGAGHPMMLALAVALGCDLFDSAAYALYARDGRYLTVRGTEHLEDLDYLPCTCPICTEYSPDDLREKGSKRQEQLLAEHNLHVTFAELRRIKQAIRDGDLMELVEERARSHPAMLDGYRALLAHVDQLEREDPASKGAFFYASNESAHRPEVARHHARMDRLTAEGHVLLTEGGVPSGDDFDATWRVVPPFGPFPRSLSETYPLTAEVPERLDRDAYEQAARGVSRLVEENPDAAFTLAHDDWPESALARVPESVELESLSAVSERLGDEASVGGDDGDDGGSASSAE
>Ex_eu_Egym_XX_Contig_4307_Len1101_Cov5_OG5_126946
MPVGTQGTIKGLTSEQLEGLDLDIILANTYHLGLRPGEDVLTAMGGLHSLMSWPRNILTDSGGFQMVSLLELANITEEGVEFQSAHDGSRINITPEKSIEVQNCIGSDIMMQLDDVVHVSTTGPRVEDAMWRSIRWLDRCIVANQHPKQQLFAIIQGGLDFDLRTKCIDEMVKRDNPGYAIGGLSGGESKDEFWRIVVHCTERLPANKPRYCMGVGYPVDLVVCSALGVDMFDCVYPCRTARFGSALTSCGKINLTQNKFKMDFGPLDPNCNCMTCKHYTRAMLHSICAKEQLVANLLTYHNLYYLKKLMWSLRQSIIEGAFPSFVRNFMKQQFPDLIYPRWVVEALQYVGIALDSPSHSEDVAST

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>Ba_ac_Srap_XX_020868589_Contig_2869_Len1179_OG5_126966
VSLPPLVEPAPELTVDEVRRYSRHLIIPDVGMDGQKRLKNAKVLCVGAGGLGSPALMYLAAAGVGTLGIVEFDEVDESNLQRQVIHSQADIGRSKAESARDTVLGINPYVNVVLHEGRLEADNVMEIFSEYDLIVDGTDNFATRYLVNDACVLLNKPYVWGSIYRFDGQASVFWSEHGPCYRCLYPEPPPPGMVPSCAEGGVLGVLCASIGSIQVTEAIKVLTGTGDPLVGRLMIYDALEMTYRQVKVRKDPDCAVCGPNPTVTELIDYEAFCGVVSDEAQEAAAGSTITPKQLKEWIDDGENIDIIDVREPNEYEIVSIPGARLIPKDGFLMGGALQDLPQDKKIVLHCKTGVRSAEVLAVLKSAGFSDAVHVGGGVIGWVNQIEPDKPVY
>Sr_st_Pinf_XX_002909030_Contig_9044_Len921_OG5_126966
MTCSRCLDLEHKLAELRAQNAQLQYQLEAFQSPEKVPAEDQQGDNGEELSDTLTYSPFSRVELQRYGRQMLVKAFGFKAQLTLRSARVLMIGVGGLGSPASMYLAAMGVGTLAIVDDDTVDRSNLHRQILHDEQGARKREKKVESAKRRLQELNPLLKCVVYPTGFTPTNAFKLVGDYDVVVDASDNVGTRYLANDVCARLHKPLVSGSALGLEGQVTVFTYKDDANATGCYRCLYPTPPRVAMSCAENGVVGVVPGVIGCLQAMETVKIITGIGEPLVGVQCFYDAGIQIVRPVEDKLLSLKSKT
>Am_tu_Hpap_XX_Contig_7555_Len420_Cov1_OG5_126966
LKGFSLMGLGAQGGVLYVTDMDTIEVSNLSRQFLFRRDNVGQQKSVCASKAALQMNPEMNIKCFEVPVGPDTETKFNDGFWSKLDGVCNALDNIKAREYTDSKCVFYGKPLLESGTLGTKANSEMVIPHKTKSYAEHEIG
>Am_tu_Hpap_XX_Contig_3139_Len813_Cov1_OG5_126966
IVDNDTVELNNLHRQIIHTEAREGTSKAYSAGETIQRFNSNTDCVVYNVRLNSTNALEIIKHYDVVLDCSDNVPTRYLVNDACVLLKKPLVSGSAMGMDGQVTVYNFGSGPCYRCIYPKPPQPETVGNCANNGVLGVVPGIIGSIQALECIKIIVGCGSVISQKLVLFNALKMQFHTIMLPEKKPQCEVCGSNPKITDLFADYAVSTGCRSDDKILVPHLLGPNELVSVVEYQKIQNSQTKHFLLDVRQPHQFKICSLAHACNIPLDKIES
>Am_tu_Hpap_XX_Contig_6949_Len544_Cov2_OG5_126966
IQITMSNSPPPAQPNDPFDRQRYMPGFDHSKIENQVAFVMGTGGLGCSVSFALARLGVKKLFLLDHDVVDFSNLNRQILFSTESVGQKKVHAAAQGLKAHIVGDTQVEVLDMDILKNWSTAVNIAKQCTVLFNNIDIGHYFDFAVLSLGKSLGIPVVAGSSYARTWIVEYYSGKPGKSSFS
>Sr_ci_Ptet_XX_001449230_Contig_21035_Len978_OG5_126966
MDSQTIFSRQVTIEDWKQDKLSQQIVLILGVGGIGSVATTNLLRLGVKKIFLVDYDHVELHNLNRQILYSNKDVNQQKVKAAFENATFHNVGNAEIQMFDLDAVKNWDKIVELASQSTAIFNCIDYGDYWDAAVQSLCLYYKIPMIIAGSFAQSFMAELYLGTPCYACMTDGLKEEYLNQITQENITQLKDISFLPANNKPQGQSHQVLCSTAGNFATQLLLNYLNEQADSQTSKKVLFYLTTFEVVIFPVFSKNNCHICKYQEPAKEQQIQATEPAKEQQIQATEPEKEKLVQVPEPEKEQLIQATETEKEQQEQATESIQKQN
>Sr_ci_Ptet_XX_001423300_Contig_16062_Len1230_OG5_126966
MKEYIEYLQNLLKQNKIEFEQEEDFIQHKVSQINNEFGYEHINRYKRQMILSEIGLTGQKQIHLAKVLIVGAGGIGAPAIYYLAGAGVGTIGLVDGDSVDVSNLHRQIIHNNYRQGMNKCESAKLQINEFNPLVNVITYKHHLSSANAIEIFQNYDVILDATDNPATRYLINDTAIYLNKPLVSGSSVGWEGQITVYGMQGPCYRCLFPQCPKTVQNCNEAGVFGVMPGLIGLIEALQAIKIIIGQQTLSQKMILIDGLRDVYKVVKLRGQQKDCIACQKQIKINDYDYASFAQTICSSSIPYRGGYKEIEWKDFLQIQRSEKVALLDVRPSSQYNIIKLDGFTNLPYSQIDQLQVEEYKDKEIYIMCRRGNNSRLACEYLKDKTPNIYNIIGGIDLYAKLYDPKMPLL
>Ba_ba_Bcae_XX_065538746_Contig_2453_Len693_OG5_126966
MRYDRQIILPEVGEEGQKKLQEAKVLIVGVGGLGSPIALYLSGAGVGCLGLVDDDLVSVTNLQRQVLYSEKELGKPKAICAAERLSALNSEIEIHPYAARLTKDNAYDIIQEYDIVVDGCDNFATRYLINDICIEQKKPYVYGAICGFEGQVSVFNYGNQKKNYRDLYPDEEEMQRMPPPPKGVMGVTPAIVGSIEATEILKIICGFGDVLAGELWTIDLRTLQSNKFSL
>Am_tu_He47_XX_Am_tu_He47-LKH612_16834_Len300_Cov2_OG5_126966
QLPRKAAVFQDEILRSSRQLVLPELGVHRHVLVVGCGGLRCPLAQYLAAASVGRLGLVDYDVVEMSNLAYQVLHGEALAAQAKAASAAASLRGLNLAVE
>Am_tu_He47_XX_Am_tu_He47-LKH612_38936_Len381_Cov2_OG5_126966
TRYDNQISIFGKAFQEKLGKQNWFMVGCGALGCEYLKGFSLMGLGAQGGILYVTDMDTIEVSNLSRQFLFRRNNVGQQKSVCAAKAALQMNPKMNIKCFEIPVGPDTENFFNDKFWSNLDGVCNALD
>Sr_rh_Blon_XX_Contig_2923_Len1284_Cov14_OG5_126966
RKEERWPKDSDEYKAGNSRKNRVKPPPAEVEGDVFDRQRVIVGFNQGLIESQTCFVLGTGGIGQDVALTLARLGVGKIIMLDCDTYDASNLTRQCLGSIEDVGKRKVDAAASNIKAHNIRSQIETVHVDALANWNKVVEIARKCDVIFNGIDLGPMWDFCACSLAKELRIPYIAGQSYDWIFNVEYYSGDPANLCAWCAEAKSESDWISGQFNTHFGLGGDLKYIKERLKAFGEKHKHNSYDAKCITEFLKADKQKFRMDGPTVSVLVNECFEKIGGCAKIGLDDLDKFLGALMHAVVKRLLPGRITKLKEVQFIPHPKHVATRFVGSWVCPCLAAGVLMVSQFANALTGRKDSGAKDPPCNITFDLGWGQTIEEKGHQETARMVQQGIFPADSLSTITEERPRASNPAKKCCMLCTEACKVQPDTQ
>Op_me_Bplu_XX_Contig_9798_Len1209_Cov295.25062034739454_OG5_126966
MDVLGDYYNCQLSNDEIIRYSRHMLVSGFGGSDGQLKIKNSKVLVIGAGGLGCPVAYNLVSSGIGVLGIVDYDVIEIHNLIRQHLYTVEDIGKYKVECMFNVLQKLNKFVKINKYNIKITKENASDIIMCYDLVVDCTDNVETRYLINDSCVKLNKILVSGAATRWEGQLTVYNYMHGPCMRCIFPNPPDPRTVVSCDEGGIICPVTFIIGGLQSLEVLKIILKKDDILSEIMLIFSGETSSFKRIKLRSKLSECFCSGNDLVLSEFSGSCDLQTSCDKINVQEFSQILVEKVEHHLIDVRDSYEYSICSFKHSINISYLELESKYYTVEKLRSLLDSNIKNNESIKPMLIIVVCQKGNLSRRVYSILKSYLEKIYSNFNLMNLEGGLQRWHEQIDNNFPTY
>Za_et_Tkod_XX_011251067_Contig_1160_Len699_OG5_126966
MLTERELERYDRQIMIFGEEGQEKLKGAKVAVVGVGGLGSPVAYYLAAAGIGTVLLIDEQTPELSNLNRQILHWEEDVGRRSKPESAKWKLERFNSDIKIEAYTGRLTAENIDEVLKDVDIVVDCLDNFQTRYLLDEYVHRKRIPLVHGAVEGMHGQVTTIVPGITKSLREIFPKVREKEEKFPIIGATAGVVGSIQAMEVIKLLTGIGEPLLNKLLLIDLAMNIFEVVELK
>Za_as_Loki_XX_KKK45330_Contig_2173_Len813_OG5_126966
MELTEEQIERYSRQLVLKEFSGEGQKKLLESRVTVIGCGGLGSPIAYYLTAAGIGTLRLIDFDKVDRSNLHRQILHFENDIGKLKTQSAYEKLHQLNPDVNIEKVNEILQPSNIKQIFKDSDYIIDGSDNIPTKMMINDACVNLNIPFTIAGVIRFNGQILTVIPEEKTTCYRCVFGDVTEHEPSMSCSQAGVIGLIPGIIGCIQANEAIKYLLNIGDLIVNRMLFLDLLKYRFSFLKVLRNEECLACGDNPKDLIETQDYKIEDACREG
>Ba_cy_Smaj_XX_072622368_Contig_1240_Len1173_OG5_126966
MLNPNLDDIQLSKDDYERYARHIILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDHSNLQRQVIHGTSWVGKPKIESAKHRILEINPTCQVDLYNTRLSSENALDIFRPYDVVIDGTDNFPTRYLTNDACVLLDKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEPPPPGMVPSCAEGGVLGVLPGIIGVIQATEAIKIILGSNTTLSGRLLLYNALEMSFRELKLRPNPVRPVIEKLIDYEQFCGIPQAQAEAEQEKAAMQEMTVTELKALLDSDAQDYVLIDVRNPNEYEIAQIPGAVLIPLPDIEQGPGVEKVKAVLNGHRLIAHCKMGGRSATAIRILKEHGIDGTNVVGGITAWSQEVDSSVPQY
>Am_ar_Mabd_XX_Contig_28909_Len360_Cov5_OG5_126966
DNVELGNLHRQVIHDEARIGINKAESAACSVRKLNSSVEVIAYPFRVTPANALDIIRQYDVVIDATDNAVVRYIINDACVVAGKPMVSGAALRMDGQCHVYNFPPSKGPCYRCHNPVPPP
>Sr_di_Smic_XX_OLQ02585_Contig_8528_Len3426_OG5_126966
MRRQRTSSASDSKSQAKASTTFEEPVVESDHDDKVSFKEIMEKISEATSRRPSQYTAKVLPGVLPFGAWDTDSGEDEDKLPRRQTSSAASPEEEAASLSKSTRPIAPQPVQPPNPSDLHWATWSKACRPFTPSTEVGTLKPKQLNLWEEERVFSPSRTWPAGPLRCAAREFYDDQRRGLPAWQAVSWKHTGPSFPVPPRLRRPGSANAVGSVRKPAHDNRGRAHFRGYVRKDEAWPEDSPEYKAGNEIENRKRPPPEEVPGDAFDRQRVIPGFDQGLIERQVCLVLGAGGIGQNVAMTLARLGVQRIILVDNDVYAASNLTRQCLGGKADVGKRKVDVAKAGLDTHNLRSEVTAVHCDALSEWPKIVELARESTVVFNAIDVGVMWDYCVNSLCKELRIPLCAGQSFGWKFMTELYTGRPQEVCAFCYDSVASTFGAAKSAVERPNGLLSRLCATVKVNEDVGAGALEAFLATDRQFRCTRGPQLSSLVRQALAKMEQNSLRYGSLAEDFLSFLRAFQEETVFLLQPGRVSSLQEVTFVPRPKHAETRYVGSWVCPCLSCAVTMVSQWAALLTAPVEEFLVKTAIPQTVTFNLDNGMTGDEQLGYEFGALGMPLDKAERRFCQDACNSKCDVCASATMLAAEESLFVGCLPVTLAPVPGIVQDAPRSWLPPEGAESSARNAATKEVLLRKGPLIHLGEDYSEVVVPAMPALDWRAELSEVHRSWAPEIYAMPLLKVSGSGEEAKAPSALQGVASGIRSALVKARGRWFRLKGCGNRDEGFLVEKKGDKGEQTLRGCCFKHTADTELRMTELVCQVLGSARLDCANSSMGCYRYEQKPGWPLPKIPRYCAVFETKSNARLGDHLLGGLLSLLPHMLLDGFEHLEQCLLRGRGEESGELLETADLVCCGMATADVLAQLQQAKRSLPERPPPSSSAVPAVPTAVASLWDAVCASLAQGLRTLSSDEPSVILWLVWRLGWECGATLRALHASGIAWGTYPDSLGIHCNAHSNNFAVKPPGCGHQETFLAALDFDMAFTRENFLPEACESGALGLESFDGILAFEANMGLKTVLSGSDFSNTGVQNAQAPPSHKLLELAIRDTMVTACSEALAGSCDPHPYSAGLKAVAYDVIKLSLCLTTEVEG
>Sr_di_Smic_XX_OLQ03449_Contig_683_Len10029_OG5_126966
MNARSRKTWCFGDCFDAFRRFVGKECDAELWAGCGLTRGEVGQYGRQLVLPKLGPEGQREISRGSVLIVGAGGLGCPVAMYLAAAGVGRLAIVDGDHVEESNLHRQIGHPWRNVDKSTAGKTCLRDLLGILMPAMPCEWAQLSSEFQNLDVVALQGLCVKADSDVPCAYFRTSHHHVFQWGYTKGRYTNKSCGVAILLRHKRLRLQWVREVYSPPDQLAGRAGALRIKGRCSDLLVIVGYVPVEPTNASQRQAVHAFYTWVDSLLSRSPARTLPILLLDANGRMGLQRLGDGPGQIAADHDATVGPWGAEAQNHNGTQLRNLLHTHHLAAANTHFSRGCGATYHGPLGHPSRIDYVVVPQGLLQHITDVRVWYRSGYRLQLIDSPDLRDHCPIVVDFNYELSFPQPQRSAKWDFTKLGRAVDGHSSKEDFLRDVQTSLAALPQPSDDVCASWNALNTIVCRLARRFFTQSGSRRTQRPLDTQQAAEQTMLAREDYRDACLQLRRQQQPAQSVHLAWAAWQKYLHFKSLQRHSKQLCRRDRRHKVDDLVQQLQQAARDKNPSLQWKLAYQIAGGKHGPKKRRYDHPQRYRATAQEWVDELSLAGPQGGCAATRLDKASADAIFPFVFARGKLLPKDAVSQAALPETDMLQYDGTDGRLRRAQPARVGVHARQSAQEDLGKLREAVRTLQRQRAVPDWCAPAEVWRMLLFPSEHCDRGASLSSQFHGQVEARLLHTLVQARASQRVPTLWNISCPVELDKRNNKPGCSGKRLIHLLCPVGKAYFHQLWARTVPRYAHHACGFVRHRRREQAITQQRCINWRLQHAGLGHVTVLYDVKNAFPSPSHASLDAAVRQHARPDDVELLMQRHREAFILLRDPFQPTYTILQVGCGNMQGDRMAPSQFLSVYLPAVEEWHVACKVLPHGAALLATDPVSGQRCDTSLSTFADDVAKTHAIPTAPEFAPIVTRMDADLDRSLQGLGMAQNHDKKELLVRLMGSGAQKAMQDIYHARTAVRGQFKRVAKYLGGWMHHSCATSPEISQRIAAAKRSWSVLQGFWFRRDAPRAQRQLVFKAMVLSAVYSGLDAVPSHKGDDKRITQLLVSLSRKLLQGRACTKPWHDVREHHRSWTNLQVFQEVGLFASATERCVRRLLWWQNIVKRPDENVALLASLFGQFPWESYTQLGPDGRLTQHANPWIRQLVEDLHELCRFDLPAPGLVHDRPLLLFSAPHQAVFLSLQIRKLFKQAPAVPLEQGADGSLESADHATDSGADAVAPAPQFACGFVGPDGVACQYVASSTVALSTHRHRAHGIFIMARQMVVCNQCPWCRKVFASVEIARRHVHARVAKGACPRTGGGATSYLECLRPPERLECPICLHHASDLVALHQHVVQHVARGQGVMQQYFRPAQPARLCSSKEQEQLLKAVAKLRTRAAGKNHTLGQPSSWLWAALMKVLAMDENISEEKRQQVKSYGDAVSDPCSLSQTVLYCRISKVYDQSKVRLQVAVTPELQEFLTELQRGLEANGGERKFGPPLRGALERHVQELLGENSGKAVSLAETCRERNPNICVEAHVKRIVGTEEAVFLMQSYDVIVDCTDAPRIRYLLNDAAVAAGKPLVAASSVALYGQLAIYNFEGGACLRSESGVLGPVVGVIGSMAALEVMKVLAKSSPLHSSCLRGKMLCYDATNISQPTYMVNLSSAAAGGANDASQRTLPPEGCIPYMAGDASNSMSASELRARLLAKIPTLLLDVRQPSHFAVCRLQGAHNWPLRKIKFSDDKECLEKISELLPKPSADCEVVCVCRRGNDSLKAVHLLRALGVQAWNLQVGAPQPAAGSPSSDIRMVGGCLYILGYSLDRLYVNMGTIPYLELLATAGHDTTARRWLCGGKKQGGPAQSCTDNRQGIASRFGEDCAGSSGGGALGSQGEGHAQVRLDTDVQRKTAGCPAAAAPAAAAMAEFAATEDALEDAVGKARSQVLPLAAGDVTNIEAMDTTPSPEQLSGEGSSPAVLPQLLPATPMEAALSVTPRLLKAQALWARLFCNPSFTFAEKQQFVFSSRFRKKAVDCRHSMIEPAPRPPTVAPRPLLEQTLIWSPKSPQMAVSGHRLFPFCGTPAMVGSPHPTTAVIAFHDTRRQYAAVGRAACNFSFNTLFAGREPSQVDLRAGEACPRRPSESEEVAEQGLDHWIFRRIKKGPSRGGQEDQVGAAFDPRAHAEVQFVGSDGLYRQVPQATQAAAARRLAAATAARCQATATKPTAACSASHGLVISTTITTTITVIISTITSTIVIVMVIVIVIIIIIIIIIVNTITIITIITIITITTNIAITITTTITIIVIIIATIAPAATSEADPGDTVSGLGGDDDRNDADDRGVHDNEHGVAAMFGCKFVYHKTSMGFLNRLEVEEFLARHVQAVQGRTPSRLLYLKGFFGKRCAGDGNEDGARANIAVPESPDRELCSSAIALCSTPRPLHRCFTRKSVSVTLMRRDGTDWVGVAEAAAASFAPRFRAVWVGPSDAGEKRPNAGKDIPPCHPFLLLLLLLLLFLLFLLLILSLHSSSSDSCSDSCYCPVLGQILTADPVHATPTRAPSANSRGAERTYDAPKAGGRPPPVEDDCAEYSDRFLPGYEKTQLLGRGACAVGSNSDRVAIARRGQAAQPPPVEDDCAEYSDRFLPGYEKTQLLGRGACAVGPEFSQVVWLAVPSGSRTPVAIKQVAKGTTGKKKSDTDVSRRERAARKEILFGSYFFEAGGEPKVSPKQNPGIAHIAKLLDYVETKRDIWMVMEFGGTSLTKMAAGLQAGAYEIKGEFHRGERLYKEHRVVHSDIKPDNILIDEDDRGHIRARFIDLGSAFSFDAPSTGLTRLKRWSLGSILLEMGLGTPLCRVASDQRNNAAGLGLFAVPGRDPEKILLRQADAICQRGLAAVLRGAPGVPLEGTERTTRPGCHGRAGCGGSFDTAACAYSGDSTGCDALAGDGGSRLVVITIITIITIITIITIAITIIIFIIVVITVLIPGGGGEFNGLDLLERMMDSNSEVKCLELRSWGTTLYPLCGIDPNALSFEDAGERRTLLCLVIEEAVKLNNDLSKVDLLLEARADPCRRSETGSFPLMLAAHHSNLKLARKLLQARAEINQQDTRLVTPLHAAVHEDSAQTVQLLLMHKANVNAQDQVGQTPAFFAGSTTVIAALVDAKADLHHLNKKGQSALHLAAHNGRYEAVVYFTDHEFLAETVDMQDERGRSALHMAAVRGHQRVVSRLMDVGANPRLKMQNGQTPMTLADKKDTDLALYIYTRMTGSKHATWSETAQNPMYLGCIFGLVPAVNIIREVGAKAWQFWGCVLPFVAKLDSPSNRWEAND
>Za_eh_Hvol_XX_004044375_Contig_1819_Len813_OG5_126966
MTLSLDATQLDRYSRHIIMDEVGPEGQGRLLSSRVVVVGAGGLGAPAIQYLAAVGVGELVVVDDDVVERSNLQRQVVHCDDDVGTPKAESAAAFVRGLNPDVSVEPVEARVDKSNVHEVVAGSDVVVDASDNFPTRYLLNDVCRFEGIPLVHGAIYKFEGQATTLVPDGPCYRCLFPEAPEPGTVPDCATTGVLGVLPGTVGCIQATEAMKLLLDEGEALDGRLLFYDAMDMTFETVPYRTNPDCPVCGEGGVDSIEDIDYVESCAISLD
>Ex_eu_Egym_XX_Contig_52399_Len342_Cov3_OG5_126966
WKHDLIEQQVALVLGAGGVGSGVAMALCRLGIRKLFILDFDDVDPTNLNRQVLFSKSNIGQLKVHAAAQALQGLHNLRTEIIPLNMDAVHRWHDVVQVAQECTVIFNGIDYGEW

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>Ba_ac_Srap_XX_020872230_Contig_8017_Len465_OG5_127020
VKLDSMYQDVILDHYKNPHGRGLRNGDAEVHHVNPTCGDEITLRVRLDGDTIKDVSYEGQGCSISQASASVLNELLVGKELAEARRIQETFLELMQSKGKAEPDDAMEEVLEDAIAFAGVSKYPARVKCALLSWMAWKDATAQALGETAGGKTA
>Sr_st_Pinf_XX_002907422_Contig_14057_Len477_OG5_127020
MIARTALKRSMGVFSRPAANVTAPAFTRARMYHDNVIDHYENPRNVGAMDKSAKDVGTGLVGAPACGDVMKLQIQVDENGTIVDSKFKTFGCGSAIASSSVATEWLKGKSVEECLQIKNTDIASHLKLPPVKLHCSMLAEDAIKAAISDYKRKQSASG
>Sr_rh_As01_XX_Sr_rh_As01-LKH294_9898_Len561_Cov20_OG5_127020
STQSTGALAIMSAVFLRHFIKKATTIPKARVVPPLQQVSGREYDEKVVEHFNNPRNVGTMDVNDENVGTGLVGAPACGDVMRFQFKVDENGKIVDSCFKTFGCGSAIASSSFATEKIVGMHIDDAAKLTNKDIAKELNLPPVKLHCSMLAEDGIKAAIKDLEQKKAAKKTGQQSPAKQSKVGDKQP
>Am_tu_Hpap_XX_Contig_8637_Len346_Cov6_OG5_127020
YHERVIDHYENPRNIGKFTKEEEKSGLVGTGLVGAPACGDVMRLQLKINNNIVEDAKFKTFGCGSAIASSSLATEWVKGKTVEECLEIKNTEIAQHLALPPVKLHCSMLAEDAIR
>Sr_ci_Ptet_XX_001442921_Contig_33785_Len450_OG5_127020
MLTLLKRSIYFVPRFSYHPNVIDHYEHPRNVGSLDKSNPKVGTGLVGAPACGDVMKLQIQVGEDGKTIEQAVFKTFGCGSAIASSSYATEILKGMTLEDAYNIKNSDIASYLKLPPVKLHCSMLAEDAIKKAIEDLQSKNNQSTQKQDK
>Sr_st_Bhom_XX_012894290_Contig_4785_Len453_OG5_127020
MFSLARSAPRFVFAARSLTCTTRLYHDLVIDHYEHPRNVGSFDANDDDIGTGIAGAPACGDVMKLQIKVADGKIVDAKFKTFGCGSAIASSSVASEWVKGKTLEEAMTIKNTDISNHLKLPPVKLHCSLLAEDAIKAAVNDYVKKSEKKQ
>Am_tu_He47_XX_Am_tu_He47-LKH612_46933_Len207_Cov4_OG5_127020
CGSAIASSSLATEWVKGKTVEECLEIKNTEIAQHLALPPVKLHCSMLAEDAIRAAIRDYQKQNVSTDN
>Sr_rh_Blon_XX_Contig_13018_Len525_Cov130_OG5_127020
MLRGLCRSVRFNAAVISRRMYHPNVVDHYENPRNVGSLDDKDENVGTGLVGAPACGDVMKLQIKIDEEGKIEEAKFKTFGCGSAIASRFKNYYFKNIFSILNYFQIIFSTSSYATEWLKGKQVDEAAKLENSEIASHLNLPPVKLHCSMLAQDAVKAAIKNYKEKKGLTESESS
>Op_me_Bplu_XX_Contig_17337_Len486_Cov11_OG5_127020
MMALARFANVGSTLCKSLPNLVTAAPKRAYHEKVIDHYENPRNVGSLKKDESNVGTGLVGAPACGDVMRLQIKVDENGKIIDAKFKTFGCGSAIASSSLATEWIKGKTTDEALRIRNTDIAKELCLPPVKLHCSMLAEDAIKAAVVDYAAKKKQAASASGS
>Za_as_Loki_XX_KKK44574_Contig_2174_Len813_OG5_127020
MNKLKSTQYTEKVLDHFRNPRNVGVIEKPDGEGKVGNPVCGDLMLITIKVAKGDKDEEDIIEDIKFQTFGCGSAVATSSMVTTMAKGMKVNDAYEISRKDVAEELDGLPPIKMHCSNLAADALKAAIDNYRGKAETYVGVEYRTCEASELKIILGIDEFLGKGVYKKKVEDLSEFNNKRVFVIDTGDESLEYALELTNHTGRVIVVTSAKSVPGPENLRRKIKRSDVKMIHQSELLEVLGTNDVEKVKIHDFDEDENYELFIDVVIILEE
>Ba_cd_Cavi_XX_038500876_Contig_444_Len822_OG5_127020
MTVPFQPTASWTYISPKVMKTFHKFYCAGVFSTEDAEIKNAHLVIGNQGHRLMGNLVVFYWLVDKTNGKILDAKFQYFGHPFLLVLAETTCNLVTGKTYAQAYNLSVNDIDTELRSHKEVPALPELYAPLYHCIIDALDVAAQQCMDISVEDGSLPLNNALLTHDFENANPFTQEEWETLSLEAKLQTLRSVTEEKIAPYIALDSGGVTIEHLEGNVVTISYTGNCSGCFSAIGSTLNSIGELLRAYVYGELQIKVNEASLDFSQSHHSNIDY
>Am_ar_Mabd_XX_Contig_6437_Len1017_Cov32_OG5_127020
LGKTGLVGKPLWAQYSAKVRDRMDNPKRRGAITKEEAAAMNCDLVVAEHGAEACGDAVRMYWAIDKDTRRIKDAKFQSFGCATAIASSDITAELCIGKTPEEAEKLVTNLEVEKALRDTPDKPAVPPQKMHCSVMAHDVVHKAATSVSLPTSAAAALANNIKNEDDEIVCECARVTLGSLRNAIRTNKLKTIADVTHYTKAGGFCKSCIKPGGHEARKRHLVDILREEIKKAGDQPSTMTVSKLKGKSLAAKAAMVQKAIDKEIAEALGSHGGSVELLDVEDGKDGVFVVYVAFLGQCAGCPSSTNQTLSFIESKLKEVLGESDLVVKVPQNNLDGVY
>Sr_di_Smic_XX_OLQ05395_Contig_19472_Len1671_OG5_127020
MLPQLFPTRCRGPGRLQDLARFLIRRGLPFPRSPEIMSLSILSRRAAAPLFAPRFAVAARRGYHEVVHDHFNNPRNVGSLDKEDKSVGSALVGKASCGDVIKLQVKVGEDGTIQDAKFKTFGCGSATEMIIGQNITEASKITNSDISSHLKLPPVKIHCSVLAEEAIQAAIADYKTKNSSEEQVSYCLALRNNRGAGDVNVPCSRSLQRLPVSKSPEIMSLSILSRRPAAPLFAPRFAVAARRGYHEVVHDHFNNPRNVGSLDKEDKSVGSALVGKASCGDVIKLQVKVGEDGTIQDAKFKTFGCGSAIASSSYATEMIIGQNITEASKITNSDISSHLKLPPVKIHCSVLAEEAIQAAIADYKTKNSSEEQVSYCLALRNNRGAGDVNVPCSRSLQRLPVSKSPEIMSLSILSRRSAAPLFAPRFAVAARRGYHEVVHDHFNNPRNVGSLDKEDKSVGSALVGKASCGDVIKLQVKVGEDGTIQDAKFKTFGCGSATEMIIGQNITEASKITNSDISSHLKLPPVKIHCSVLAEEAIQAAIADYMTKNSSEASAL
>Pl_gr_Dsal_XX_BM448698_Contig_846_Len504_OG5_127020
MLPIAALVRLTPLARPTVANTALPLQQQFARGYHENVVDHYENPRNIGALNKSDQDVGTGLVGAPACGDVMKLQVKVDENGYITDSRFKTFGCGSAIASSSVVTEWIKGKPLDEVVKIKNSEIAKHLSLPPVKLHCSMLAEDAIKAAVKDIQAKRAASAKPAAEAKA
>Za_eh_Hvol_XX_004045199_Contig_2957_Len429_OG5_127020
MGIGSDMYRQQIMDHYKNPRNHGRLESPTFTHTGENPSCGDTITMDVQLADDGETIERVAFSGDGCAISQASASMLTQRLPGTTLSELEAMDTDDITEMLGVDISPMRIKCAVLARQVAQDGAKIHDGEIEIEKTKTEDGDD
>Ex_eu_Egym_XX_Contig_18068_Len399_Cov178_OG5_127020
YSDLLVDHYENPRNVGSMDVHDPTVGTGLVGAPACGDVMKLQLKVDHNGIITDTAFKTFGCGAAIASSSLATEHLKGKTLEEAAMLTNKEIAAELLLPPVKLHCSMLAEEAVKAAVKNLQAKRLSPAKVEVI

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>Sr_st_Pinf_XX_002901673_Contig_13960_Len483_OG5_127169
MALRVISQTLRARALKSATSAAWRANSQRPAGFAFFSTKYTPQHEYVTLNGKEGTIGITDFAQNSLGDVVYVDLPSVGDKFAKGDAFGAVESVKAASDLYTPAAGTVTAVNEDLAESPNLVNDEAMTGGWFIKLELDDVSDVDDLLDEAAYKEHCENEDH
>Sr_rh_As01_XX_Sr_rh_As01-LKH294_10569_Len456_Cov26_OG5_127169
MRVPLRKLTQSLSRPSLMISNVQYRHFSDYRYSEDHEWLKIEGDEAVIGISDYAQESLGEIVFVEFPEINDEFGKGDVFGQVESVKAASELYMPVAGTIVKVNERLSDEPGLVNSSPETDGWMIRIKMKDTAEADELMDATKYGEFTENLH
>Sr_ci_Ptet_XX_001427238_Contig_32911_Len483_OG5_127169
MLSRGTSYDYFVQIFNINIFLFKMYMRSIFKLRQAFSVLTKYTKDHEWIKYDTQTKIAKIGITDYAQNELGDIVHVDFQKVGLLFKTHQSLGAIESVKVAADIYAPVAGEIVGINEDLKDSPNLINEKAEETWILQAKVQNESELDTLLDKQSYEKIINK
>Sr_st_Bhom_XX_012895318_Contig_4060_Len594_OG5_127169
MVFIYGGFQVIFEWFIHSYYVLSMDFLGYVDFSRCSSLACRFNDSTILLFEASSRFASKTLTSARFLASRSFATYFSKDHEWIEYTAGKPAVVGITDYAQHSLGDIVYIELPEVGSTIKAGDSFSSVESVKAASDAFCPATGKVLEVNTVLSETPSLVNESPMEKGWFMKLELSNPDELKELMDKAAYDKFCKEAEH
>Ba_ba_Bcae_XX_065539607_Contig_3228_Len381_OG5_127169
MNFPQNLKYTSEHEWIRIEGDIAYVGITDYAQEQLGDIVFVDIPTVGETLEAGETFGTIEVVKTISDLFLPVAGEVLEQNEALEENPELVNKDPYGEGWLIKMKPADPKAVEDLLDAEAYKAVVNG
>Am_tu_He47_XX_Am_tu_He47-LKH612_22114_Len465_Cov3_OG5_127169
MSRLAVKSFVSVSKLALRSKTSFSRMSSTLRFSPSHEYIRLEGDVGTVGITDHAASALGDVVFVDLPSVGASYNAGDSFGSVESVKAASDVYAPVSGVVLAVNSELETTPSKVNESALSAGWFIKLKVSAKGKAEFDKLLDEAAYKKHCDEEKH
>Sr_rh_Blon_XX_Contig_11807_Len363_Cov26_OG5_127169
MWVQRLSTGLYRVGVTKKLTDSLGGIGFVDICAEGSILTSGKPFGMVEGPSGTFTVSSPISGEVIECNEILKKNPTVVLSFFIKCILLPSNEMITTTTEFIAALIYCISLHRENKRCVTF
>Sr_rh_Blon_XX_Contig_15350_Len435_Cov131_OG5_127169
FARSLVSRLSATRSFAVRRVPFSTLYTKEHEYLKADGDLHFMGISDHAQSELGDVVFVELPEVGAEFAKGDALGSVESVKAASSVYAPIDCEIVEVNKSLEDNHGLVNESAEEDGWMVKLKATNPDQLSDLLDADTYATFCNEE
>Op_me_Bplu_XX_Contig_33079_Len183_Cov7_OG5_127169
SLPLSSAPGVRYISLTSRALGDRRFTAKHEYVDISGTVGTVGITDFAQKELGDVVFVELPA
>Op_me_Bplu_XX_Contig_24111_Len219_Cov9_OG5_127169
TMESVKAVAEVYSPVAGVVREANAALSKQPGLVNTSPYDEGWLVKLDLTQQQVDAAAQLMDAAAYEKYLKDH
>Za_et_Tkod_XX_011249105_Contig_1767_Len405_OG5_127169
MIEVGEYKVKEGLYYTKDHEWAQVLDDGTVLVGISDYAQKELGDLAYVELPEVGKEVSKGDVLCEIESVKAVSEVYAPVSGEVIEVNEALEDSPELLNEDPYENWIAKLKPTNLEEELKELMDAQAYAEYLRSL
>Za_as_Loki_XX_KKK41499_Contig_3774_Len426_OG5_127169
MKGIEKREKKMDYEFPSDIKYTTTHEWVKIEDHITISGITDYAQHQLGDIVFIELPEVAMVFERENNIGEIESVKAVEEFLMPLSGEIIEINNQLSENPELVNTSPFRDGWLVKIKISNENELDELLSVEKYKELVKSEEQ
>Za_as_Loki_XX_KKK43764_Contig_3936_Len393_OG5_127169
MTKWFTKTHQWFDDGTKEVGITPYAADQLGEISFVDVEGLEGAELEQVTMDGDEPTSDPIDCTVESSKAVGDIYSPVSGTVTELNTKLMDEPEKINEDAFTAWLYKIEPSNWDADKGNLIDESAYNAFIG
>Ba_cd_Cavi_XX_038500181_Contig_758_Len342_OG5_127169
MWYSSYHVWILPIHESIVRLGVTKRMCSNLGEILHIDLPVLGNVCKEGEVLVVLESSKSAVEVLSPVSGKIIEVNQGLMEDIKLLNTSPEDLGWFVVVDLGRPLNTENLLAKD
>Ba_cy_Smaj_XX_072619214_Contig_3382_Len399_OG5_127169
MAFEYPEDLKYLDSHEYVRLDGEIATIGITSFALDQLGDIVFLELPEMGDDVEAGEGFGTIESVKAVEDLKAPISGTVIDRNEGLIDAPESLAEDPYGEGWLIKIRIADPDGDLEDVLTAAEYKAQVEGDEE
>Am_ar_Mabd_XX_Contig_34632_Len264_Cov5_OG5_127169
LKYTNDHEWIRVEGNIGTIGITAHAAGELGDVVYIDIADDLTEMTSGENFGTIEAVKTVADLLAPVTGKVTAINTALNDAPETVNNDP
>Am_ar_Mabd_XX_Contig_17937_Len387_Cov34_OG5_127169
RYAKTHEWVCAEPGTRNIAKVGISDHAQKLLGDLVFVEVPPVGTSKAKGATLCVVESVKSVSDVYAPVSCEVVEKNEALKDPTLLNKDAEGKGWIAKVKLTKLDEFESLLDEEAYKKHCAAEEAAGHH
>Am_ar_Mabd_XX_Contig_10872_Len312_Cov4_OG5_127169
IPKGLYFGKTHSWAFMKKNGSVKIGIDDFLQHVTGKITRVELKRAGETVKKGELLMSIIRKGKLLNIYSPISGTITEVNENLESNSSLLNSSPYSEGWVYLIEP
>Sr_di_Smic_XX_OLQ06495_Contig_4103_Len5250_OG5_127169
MFRALLCTALLVQTRSWECPAGFAGPEKCLGKENAGKCELQKPSKVDIDTNNALSCGNPNAKLAEFETDLGGGSYYKGCGLNQDGLVDSCCNCWPLKEAASNEVKIVPISNAEDRPSAFDDDPACDATSQQDTDVQEAPQQFRMALTSAACVTSTGLGEWVITRFWSPGHLENLECHFFRNFANSPLPGYIEVQALAVDRRSIRRLDRFSICPRLLSPLRAVMSSTGAGFVDVVVADLVAPPTSKSATSASPLEASPAPGEIGENAGQPTMGAQAGGIAGSPSTGTSALVETAVADEDPVMGVPPSSDEEEELLADVVGAQHFPGVDVVDGEAQTVHFTPILAFDAHDVGVQTANEVMFSSFVGDIVCRRPPATDFAIPAGRQGGPGGLWHQEPESPTAGAGTQHLGRLPVPAPRTGADLRHKEIPYSVVGWTADTWEEAERLEAAIASGASTPPQSVSAGVILRSLPPNVRGGRLPRERPADFTKWIGWCFVKCPDTVGGGLAPTTHRCWAAPTSTTSATAVHRRRRGSASTRLKFRHHGPASGLVCGARRTGRENRPVRGAALARPGWSSQHRRPHRPGRQVGGRNLALEAMLAAPPLVEESSTLALVGAGPSRPDLPVRRDATRASLAAAVEAVRPANVKRAPDLEPPGVRGQGPRLAHLYPDLSGDWRRLSGRRVPERYFLAAFRYQEHDLGIRGGIPPALAPLVNFADRAAFDPARAAHSADVFVIAVWFMLREIEVAAARVSDMVVSPGLAVRQCGTDAAPGRPGHAWASDEQEFFAGCTRPWLHGFHSPGGQRWVVCPRALRVNDRYARAASDDDPMFGCILDADIPEFEPPHRVLEWPVVPTGDYAYNAKLLDGKPRQFPTRRLAGADAVLSRIYHEHTVSKAYTPLLLGEILSARTWTSADELNKLAAGGKEPSGGALHIVAGTVVAAWEPRGVMAMPDRPRDQEHTRALLDELVAETRLGRVTRPCAAPDHWSVSTVALPSVADMGVLRQPPPGLFRGPLLRHLPGRRERRAEASPGRGLAPVRPQRHHGASDVPTHHFLDAYRQWAVRHPGHCGTFLPSAAGVTLWFHFAMCFGAAASVWNFNRAADAVQMLLRSLLLVLLGHFVDDFNGVDAADLADSAHHAVADFFALLGLQTKPSKAQAPAKRHVVQGVELSIRPEGVELSPTAQRTQKILGQIDDALARDSLSPDEASRLAGRLTFLSQSTFGATGRAAIKPLYSRAADTAANSDDTLSVGLRLVASHRPRLVPWPGRVTGPFPVLYADAFFLDGDLRKKPGHLAAGEAVPKAARWQNGCGYVLLLDGHVFYDYGVIKPEHLAPFAARKAFIYVLEIVAQVLPLVTFARRLSPFWIAFIDNVAGQFALMKGYGKDPSVNGILASFWGLASDRQWAPDFHRVPSESNVSGAISRGDDSRARAEGWTRLTTPVDDIMDVLARAASDIDFACHVQALAVDRCFIFTTFDFVNRPAPAYSGGAWGRAQKYLRREESMGIELARLTEQGQRYFTKTHEWFQVEEEGVGTVGITQVAQRALGEVLYCKLPQEGARFKVMETLATLEALKSVGEVHSPIRGEVIEVNSRLEREPALVTYAPLTDGWLVRMAFDGQIPRYLRRSSAIPRSQVEPLLADIPGLVRYLEERLLSSPGDSDALQELTFDGLRTIERWYIHKAASELNLYTASHGTGAGRQLVVRRAPRTRNQPGPDADEDSDDEEEDEEEEAIPQRERPRLERRRKRAPVRVLYK
>Sr_di_Smic_XX_OLQ05697_Contig_11407_Len2760_OG5_127169
MGWTWALFFANETVASIVRETCEGHGCEMREKLPVPQLWDSPTITSTYVDNVAIIGARKKDVENRAQRINEAFEQKGIPIVWSYTSPVRRLETVGCCIDFEKKTLENKAARLWRVYLAGLELVKRSKVRGKVVQVWLGHVTAIFRFSPYLLSIFDKIYRFTMITEDKRVSLWPAVRAEIQNACDLIWFARVDLGAGYISHVDMGDSADKGYALMSRSASTSLIRAACCFREKWRYVSLPDSLKELVEKVGVSREDVYDFGRLESTMRSTWSGATLSGVGLGTQYSQWLQEALQEGSWLKTSPLMSQYRAKRSMRVDVDCPALVPPLDPELLSEGTFKLLWAKRWKNPEEHIGMKEGRVALSSLKRSARVLSLCGKRKLTICDNLPVVIFFEKGRSSRPGPNRLCRISAAIQAIKAVLENASDKYSADAAEITWALETASSIRGSLKRLPSDSTPKRRWRQGERVDSNSNINAKPCNKKLLKKRELSVEAAVPPHKRLRASKVKPTTLKLYHNAVVEFEEWAADRALNLGSHKEIDEALVEFLHELCEDSRNISDANYTIFGYILLKSNFHMQDRDQLPFAKQAMKGWRARFPAKSRTGVDLRLWDLVALHCFRLGFIDSAAAILIQGDSYLRPNEVLSIRRDCVVPPSSSTLSEIWGVVICPFEEGVPTKSGEFDDTILFDTKERMDVNVIMKCLYRASRGHDYLFENLSYKDYVSHVKKASEHVRAQTVFTRSVISTRYKNVVGGSALSDILHPGSMAFALRASLRSACRMHGLRSGLAAPTFAAPRFGLRCFSDLRFAPTHEWFKAEGNTATLGISDFAQGQLGEVVYVELPEVGATFSTKDTICTLESVKAVGEVYAPVDMEVTDINSKLSDEPATINSSPEDEGWLVKVKFSGDASSLMDRAAYEKHLESEKTEE
>Za_eh_Hvol_XX_004042292_Contig_3157_Len381_OG5_127169
MFEIPDDRKYLESHEWTTTEGDAVKIGISDFAQDELGDVVFVELPAEGDELAAGEEFGVVESIKAVSDLYAPISGTVTAVNEELFDAPELLNDDPYGDGWMLAVEPADTSEFDDLLSPEEYREQTE
>Ex_eu_Egym_XX_Contig_29495_Len522_Cov2_OG5_127169
MLCPCRCIPRPTADQSKLMHVHARLRTVGGAQRAQALISEYQRLSGTDASAGLYYTKDHTWVRLAGTTAQFGWTQKHQRDAGEIVYVELPEVGETYEADEPVGVVESVLGAEDIMMPVSGKIREVNTLLVNSPWLINTVPESDGYIAIVDVHDPLPDGLMTKEEYHIWLESAL

50
PTL2/Data/Pre-Guidance/OG5_127195_preguidance.faa Normal file
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@ -0,0 +1,50 @@
>Sr_st_Pinf_XX_002908862_Contig_8654_Len960_OG5_127195
MLLRSSRVGINCRYLSVLSGISEDLLVSTSIGHQIGGDSHAALVDSLVQTNVVAAGSRLEAALRRVDRADFVAPAFQSSSERYANRPLKIGTVATISTPQQHAQVLGLLEPHLQPGMTAMDIGCGSGILVATMAQLVGPMGFVTGVDIVPELVEFSKENLQRSLGKDAADKQTKIIVSSGKKDLGLPSDVRYDCIHVGVAVETKAEAESFLNYLKPGGGLLIPLGGAGTEQKLVKMTKQADGTVDKRDIMSVLCQPMLDSIPVEDIQETRAENLARVENALTLWREDFETKNGRKPTRDDLMGNEESKKLFQEFASLRK
>Sr_st_Pinf_XX_002899158_Contig_11057_Len720_OG5_127195
MSFWPCNSSSNEGLVSNLKRTNVVRSDAVFNAMVKTDRAKYLAQIETPDGGHVGELAAYQDVPHPIGFHQTISAPHMHAHAMELGYAAIKDVRHPRILDVGAGSGYLTACLGRMVEDNGHVFGLEIVPGLAQFAKKNIQTADGDLVDRGVVSVRCHNGWDGLPNEAPFHYIHVGAAAESPPQALMDQLADGGRMVLPVDEPRGGQVLVEITRHGTNFSQRRLFGVCYVPLVRERERKLS
>Sr_rh_As01_XX_Sr_rh_As01-LKH294_5949_Len699_Cov11_OG5_127195
MAWFFRSTLKSHGELVDYLCRSNIITHKEISQAMLRVDRADFAPSHSYMDSPQYIGYNATISAPHMHAHALNDLYSNLQPGMKALDIGSGSGYLVAAMAYLVGEKGKVIGIEHIQELVDLSVVNVNKHHADLLKSGRVELLCGDGRLGYAKQAPYDAIHVGAAAAVNVADELCKQLKNGGKMVIPVELQSGEQIFREYVKDEQGKVSYTNKVAVRYVPLTNEKSQRKSGLFE
>Sr_ci_Ptet_XX_001441355_Contig_27476_Len696_OG5_127195
MNNKLEKLVQNLFKKGVIKSEIVKKVLLSVDRQQFVDESDKIYAYEDYPLQIGYNATISAPHMHAYSLELLKDHLQNGVRALDIGSGSGYLCAAMFLMMKSQQSKVIGVEHVPELVEKSIKNLSQQFKIIIDRAYNQQLKDKQIQIIRGDGRLGFEQEGPYQAIHVGAAAETIPQQLLEQLDKGGRMVIPVGKGNQVFQVIDKDQNGKINIQNVLGVRYVPLTDLNKQLNK
>Am_tu_He47_XX_Am_tu_He47-LKH612_22028_Len534_Cov4_OG5_127195
PQSIGFGATISAPHMHAMCLENLKTHLSSGKRALDVGSGSGYFTVLMAAMMSLQGVTVGIDHIPELVDMSIANIRKSYFEMLDTGRIVMIAGDGKLGAEQYAPYDVIHVGAAAAEIPKALLQQLAVGGRMVIPVGPEGEVQYLMQIDKISEDQYKETKLTGVVYVPLTSKAHQLGRA
>Sr_rh_Blon_XX_Contig_11391_Len354_Cov7_OG5_127195
EDKPRNIGCEATITSPHMHAIALEALFSEDEIETKSKNRSPEKPVIGLDIGCGSGYLTVCMGHILASDDSKVYGIDHARELIALSRNNTAKSHQNFLDSGRVAYYEGYTAFLXXXXM
>Sr_rh_Blon_XX_Contig_6457_Len843_Cov9_OG5_127195
DRGDFSFSPVHSYANLGTIFGMGPILSSPWFHFEALERIRDALQPGRKILIVGAGSGYLACIMARMVRCSGSGGHIDVMERDKSSLLSAEYNIRKNHEFLIEDRVVRMHLVDEPHMGFQQEMSNGEQEKDSGKYDAIYVTEQPDEDLTYSWELVLCRQLAENGTLIVPNFQITKDPESSDDDVVPLMQEVVPNLKRPINPRDRWTGDKEQRQRQRRDWMRDKPLLGKTAEEMEQIFKSSEDSPVKETTDGVNNTISYVNWYEKRLKDWHQKALQCHNRLV
>Sr_rh_Blon_XX_Contig_8535_Len534_Cov16_OG5_127195
STADSHEKMVSNLVKNKLIRSENVIKAMKSVDRKDFVNEKKRAYMDRAVLIGYGSQISAPHIHASGLELLATFARKGAHILDIGSGSGYISTCLARMGCSKVTGVEHVADLVKQSKQNISANHKELLETKQVKIICADARKLVGPEGCSFDAIHCGAVTTRSTVTITPSFLPSIRRN
>Op_me_Bplu_XX_Contig_14799_Len678_Cov843.5132743362832_OG5_127195
MAWRSVASTHLDFINQLRHHGVIENHIVYEIMKNVDRAEFVHINPYNDCPQAIGYGATISAPHMHAFALEYLKQNLIDGARVLDIGSGSGYLSVCFALMVSPKGKCIGIDHINQLIEKSINNTKKNHSDLLENNLLEFIEFDGRKDMSNLGKFNVIHIGAAVEELNQNLIDMLEPSGLLLAPIGEANATQSYNLVEKSKDGRTFNSRKLFDVSYIPLTDKSKQIS
>Za_ec_Maeo_XX_048062537_Contig_935_Len645_OG5_127195
IKKMEAIVKGLINAGYLKNKMVSKALLTVPRHEFIPAELHDYAYVDTPLNIGHGQTISAIHMVAIICDALDLKEGDKVLEIGTGSGYHAAVVAEIVGKNGQVITIERIPELAEKAESTLKKLGYTNVKVICGNGTLGSSEFAPYDKIYLTASGPDIPNSLIEQLKKGGKLVAPVGLYIQDLILLEKKNGNIIKKNLGAVAFVPLIGKNGWHNEY
>Za_as_Loki_XX_KKK40357_Contig_2627_Len690_OG5_127195
MIGIEMSLEDKRKSLVESLKKRDIITKSEVIRAMLTVPRHKFIPKSVESSAYIDSPLSIGKGQTISAPHMNAMMCEYLELKEGDKVLEVGTGSGYHAALCAEIVSSKDSKIPGHVYSIERHKELVESAIKSLVETGYDDRVTVIHGDGTIGYPKEAPYDKILVTAASPKKVPPPLREQLKDKGLLCIPAGSKNFGQKLYIVRKQGSDFKTKEITGVRFVPLIGKFGFEP
>Am_ar_Mabd_XX_Contig_10564_Len810_Cov7_OG5_127195
GSGKRRNAGFVETLLHRQLIRQESLLKAMLATDRKDFVAQDTDLDIVYSTEKFEALPLGWNATISAADVACVGLDLVAENLCDKPAGCRVLDVGCGSGYSTAILARIVGSGGLVVGIDHIPQLIDLAHHNISRSDPALLQHIKLVVGDGRSGVPEYAPYDAIYSAAAPESIPAELVRQLKPGGRLLTPVGPQNGMHVLTQIDADADPTNKPRITCLGTVRFVPLTDSQTQLEGKAALHVQLTPTYHPAPDTTPQQLELIKRTVLSHTKK
>Sr_di_Smic_XX_OLQ08187_Contig_31007_Len810_OG5_127195
MMPQMPLAKQVRDTHADEKTLPETAHAQKVLATRAELLRDNWPVDDDVVHAMAGVDLNAIFQCLERNRAKEPAWKPAYAKYLDDSRVAHLEQGGYVFENLSVYMVLLQLLSPALHHPGARVLDVGCGTGFLTAALATMIAERSGHVEAIDIFQRQVEHAERDIRECLPHLLPFCSFQVANGWEYRCEECFDAIAVAAQCDHPPENLVRLLKPNGILVCPVGPVVPIDSKHPGRFQPYWMVKMGPVAGAAPAFSGRAGPISVNFLPLLPP
>Sr_di_Smic_XX_OLP94023_Contig_30658_Len831_OG5_127195
MGSRAPAAEVPEEEAPVCRFCGVRLSTADSHEELTELLFRHGVLRSAKAVEAYGAVDRADFIPEDGDAYLDAAAVLGRTGAQVSAPHVHAAALELVQDKIASVHEELRILDLGSGSGCMAAMLAHLVLGHGRVLGLEHIKELADESVLNVAKNHKALLADGTLELRCQDARTLTEDENRFHIVHCGAALEGPEPWLLKLLHPGGRAVAPIGTADTPQWLSSIDVSEEGEPVVEKHLRVLYVPMTSEEDQRSRGAAWEDVVARCVRNSADLPPLDRP
>Za_eh_Hvol_XX_004044448_Contig_2049_Len735_OG5_127195
MDNSVLRDDMVDGLEHSLELLPEAVSIAMRSVPRHEFVTDSPYQNRPTEHRDTNTTILAPTTVARLLAALDPQPDDEVLVVGAGVGYTAAVLAEIVGDARVHAVDITRSLVYEARENLQRAGYGGVLVDCRDGAEGLADYAPFDRILVEASAVRPPARLLAQLADGGRLVMPKGVGEQTLVAVEDGEVAESFGPLSFKPLLVDGEQTGSIVRNRTRREDPEYEGRGWHAGHGWEQDWIDWGGSG
>Ex_eu_Egym_XX_Contig_2661_Len630_Cov6_OG5_127195
SNVELVNFLFRAGRLMNEDVKKAMLTVDRGNYCGPHDPYGDCPQSIGYNVTISAPHMHAMCLDLLKDYLKPGCRALDVGSGSGYLTACMAVMCGQAHGIEYIPELVPISIANVKKDGKSDLLDGKTLTFQHGDGSKGLPSFGPYDSIHVGAAAPQLPEALVEQLAAPGRMIVPVGPQWGAQELVVVDKDAAGNVTQRTECGVRYVPLHM
>Ex_eu_Egym_XX_Contig_22233_Len759_Cov14_OG5_127195
LPMPSHASDVAATRNELKPWPVDEDVVEAMSAVDLYKIQATLAKHRQVEPAWKTSYAKFLDDSRVAHLEAGGYVFENLSVYMTLIQLLAPAVRSTTATCARXXXXDVGCGTGFLTMVMAHLVAPNAGHVTAIDVFERQVQHAERDMRAVRPDLLPVCTFAVANAWSFQSEQKFDAIAVAAQCATVPQNLVALLKPGGRLVLPLGPVVPINSKRADKYNPYWLVEAGAEGEPPVREERAGPISVNFLPLLPVA

16512
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PTL2/Data/Raw/Ba_ac_Srap_XX_Ba_ac_Srap_Streptomyces_rapamycinicus_NRRL_5491_GCF_003675955.1_ASM367595v1_genomic.WGS.CDS.Renamed.Universal.AA.fasta Normal file
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PTL2/Data/Raw/Ba_cd_Cavi_XX_Ba_cd_Cavi_Chlamydia_avium_10DC88_GCF_000583875.1_ASM58387v1_genomic.WGS.CDS.Renamed.Universal.AA.fasta Normal file
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PTL2/Data/Raw/Ba_cy_Smaj_XX_Ba_cy_Smaj_Spirulina_major_PCC_6313_0GCF_001890765.1_ASM189076v1_genomic.WGS.CDS.Renamed.Universal.AA.fasta Normal file
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PTL2/Scripts-DEV/Guidance_EXAMPLE/CheckSeqScores.py Normal file
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@ -0,0 +1,30 @@
import os,sys
with open('ScoreBySeq.tsv', 'w') as o:
for clade in os.listdir('GuidanceOutput'):
if(os.path.isfile('GuidanceOutput/' + clade + '/MSA.MAFFT.Guidance2_res_pair_seq.scr_with_Names')):
for line in open('GuidanceOutput/' + clade + '/MSA.MAFFT.Guidance2_res_pair_seq.scr_with_Names'):
if('SEQUENCE_NAME' not in line):
o.write(line)

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import os, sys
from Bio import SeqIO
score_by_seq = { line.split('\t')[0] : float(line.split('\t')[1]) for line in open('ScoreBySeq.tsv') }
remove3 = [seq for seq in score_by_seq if score_by_seq[seq] < 0.3]
remove5 = [seq for seq in score_by_seq if score_by_seq[seq] < 0.5]
remove7 = [seq for seq in score_by_seq if score_by_seq[seq] < 0.7]
for clade in os.listdir('GuidanceOutput'):
if('OG5_' in clade):
with open('SeqFiltered_ToAlign/Preguidance_0.7/' + clade[:12] + '.fasta', 'w') as o:
for rec in SeqIO.parse('GuidanceOutput/' + clade + '/Seqs.Orig.fas', 'fasta'):
if(rec.id not in remove7):
o.write('>' + rec.id + '\n' + str(rec.seq) + '\n\n')

0
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--- init HoT_COS_GUIDANCE2.pl pid=6505 Sun Feb 20 00:14:47 2022
met=MFT
infile=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.numberd.fas
seqtype=0
outdir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
tgz=0
debug=0
basedir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
output_id=MSA_0_cos_MFT
---
TREE_FILE:MSA.MAFFT.semphy.tree_0.rooted.GoodBranchLength
-Making hot_H ...
-Making hot_T ...
-Making branch 20 of 125 ...
---
MSA_0_cos_MFT HoT_COS_GUIDANCE2.pl done : dir saved to /scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA_0_cos_MFT
Sun Feb 20 00:14:53 2022
--- init HoT_COS_GUIDANCE2.pl pid=10893 Sun Feb 20 00:14:53 2022
met=MFT
infile=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.numberd.fas
seqtype=0
outdir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
tgz=0
debug=0
basedir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
output_id=MSA_1_cos_MFT
---
TREE_FILE:MSA.MAFFT.semphy.tree_1.rooted.GoodBranchLength
-Making hot_H ...
-Making hot_T ...
-Making branch 109 of 125 ...
---
MSA_1_cos_MFT HoT_COS_GUIDANCE2.pl done : dir saved to /scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA_1_cos_MFT
Sun Feb 20 00:15:00 2022
--- init HoT_COS_GUIDANCE2.pl pid=14766 Sun Feb 20 00:15:00 2022
met=MFT
infile=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.numberd.fas
seqtype=0
outdir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
tgz=0
debug=0
basedir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
output_id=MSA_2_cos_MFT
---
TREE_FILE:MSA.MAFFT.semphy.tree_2.rooted.GoodBranchLength
-Making hot_H ...
-Making hot_T ...
-Making branch 83 of 125 ...
---
MSA_2_cos_MFT HoT_COS_GUIDANCE2.pl done : dir saved to /scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA_2_cos_MFT
Sun Feb 20 00:15:07 2022
--- init HoT_COS_GUIDANCE2.pl pid=18991 Sun Feb 20 00:15:07 2022
met=MFT
infile=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.numberd.fas
seqtype=0
outdir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
tgz=0
debug=0
basedir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
output_id=MSA_3_cos_MFT
---
TREE_FILE:MSA.MAFFT.semphy.tree_3.rooted.GoodBranchLength
-Making hot_H ...
-Making hot_T ...
-Making branch 61 of 125 ...
---
MSA_3_cos_MFT HoT_COS_GUIDANCE2.pl done : dir saved to /scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA_3_cos_MFT
Sun Feb 20 00:15:12 2022
--- init HoT_COS_GUIDANCE2.pl pid=23356 Sun Feb 20 00:15:12 2022
met=MFT
infile=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.numberd.fas
seqtype=0
outdir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
tgz=0
debug=0
basedir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
output_id=MSA_4_cos_MFT
---
TREE_FILE:MSA.MAFFT.semphy.tree_4.rooted.GoodBranchLength
-Making hot_H ...
-Making hot_T ...
-Making branch 77 of 125 ...
---
MSA_4_cos_MFT HoT_COS_GUIDANCE2.pl done : dir saved to /scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA_4_cos_MFT
Sun Feb 20 00:15:19 2022
--- init HoT_COS_GUIDANCE2.pl pid=29089 Sun Feb 20 00:15:19 2022
met=MFT
infile=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.numberd.fas
seqtype=0
outdir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
tgz=0
debug=0
basedir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
output_id=MSA_5_cos_MFT
---
TREE_FILE:MSA.MAFFT.semphy.tree_5.rooted.GoodBranchLength
-Making hot_H ...
-Making hot_T ...
-Making branch 54 of 125 ...
---
MSA_5_cos_MFT HoT_COS_GUIDANCE2.pl done : dir saved to /scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA_5_cos_MFT
Sun Feb 20 00:15:25 2022
--- init HoT_COS_GUIDANCE2.pl pid=33605 Sun Feb 20 00:15:25 2022
met=MFT
infile=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.numberd.fas
seqtype=0
outdir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
tgz=0
debug=0
basedir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
output_id=MSA_6_cos_MFT
---
TREE_FILE:MSA.MAFFT.semphy.tree_6.rooted.GoodBranchLength
-Making hot_H ...
-Making hot_T ...
-Making branch 58 of 125 ...
---
MSA_6_cos_MFT HoT_COS_GUIDANCE2.pl done : dir saved to /scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA_6_cos_MFT
Sun Feb 20 00:15:30 2022
--- init HoT_COS_GUIDANCE2.pl pid=37939 Sun Feb 20 00:15:30 2022
met=MFT
infile=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.numberd.fas
seqtype=0
outdir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
tgz=0
debug=0
basedir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
output_id=MSA_7_cos_MFT
---
TREE_FILE:MSA.MAFFT.semphy.tree_7.rooted.GoodBranchLength
-Making hot_H ...
-Making hot_T ...
-Making branch 101 of 125 ...
---
MSA_7_cos_MFT HoT_COS_GUIDANCE2.pl done : dir saved to /scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA_7_cos_MFT
Sun Feb 20 00:15:36 2022
--- init HoT_COS_GUIDANCE2.pl pid=43234 Sun Feb 20 00:15:36 2022
met=MFT
infile=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.numberd.fas
seqtype=0
outdir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
tgz=0
debug=0
basedir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
output_id=MSA_8_cos_MFT
---
TREE_FILE:MSA.MAFFT.semphy.tree_8.rooted.GoodBranchLength
-Making hot_H ...
-Making hot_T ...
-Making branch 73 of 125 ...
---
MSA_8_cos_MFT HoT_COS_GUIDANCE2.pl done : dir saved to /scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA_8_cos_MFT
Sun Feb 20 00:15:44 2022
--- init HoT_COS_GUIDANCE2.pl pid=49264 Sun Feb 20 00:15:45 2022
met=MFT
infile=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.numberd.fas
seqtype=0
outdir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
tgz=0
debug=0
basedir=/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance
output_id=MSA_9_cos_MFT
---
TREE_FILE:MSA.MAFFT.semphy.tree_9.rooted.GoodBranchLength
-Making hot_H ...
-Making hot_T ...
-Making branch 25 of 125 ...
---
MSA_9_cos_MFT HoT_COS_GUIDANCE2.pl done : dir saved to /scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA_9_cos_MFT
Sun Feb 20 00:15:50 2022

0
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/ENDS_OK Normal file
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PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_AlternativeMSA.tar.gz Normal file
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PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_BP_Dir.tar.gz Normal file
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PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_JalView_Annot Normal file
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PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_col_col.scr Normal file
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#COL_NUMBER #COL_SCORE
1 0.000000
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340 0.225000
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343 0.225000
344 0.325000
345 0.325000
346 0.325000
347 0.275000
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349 0.275000
350 0.325000
351 0.325000
#END

6
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_msa.scr Normal file
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#REF_FILE /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance//MSA.MAFFT.aln
#ROWS 64 #COLUMNS 351
#ALT_FILES -d /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/GUIDANCE2_MSA/
#N_ALT 40
#MEAN_RES_PAIR_SCORE 0.948841 #MEAN_COL_SCORE 0.009544
#END

321402
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PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_col.scr Normal file
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#COL_NUMBER #RES_PAIR_COLUMN_SCORE
1 1.000000
2 1.000000
3 1.000000
4 1.000000
7 0.924242
8 0.969697
9 0.969697
10 1.000000
11 1.000000
12 1.000000
13 1.000000
14 1.000000
15 1.000000
16 1.000000
17 1.000000
18 1.000000
19 1.000000
20 1.000000
21 1.000000
22 1.000000
23 1.000000
24 1.000000
25 1.000000
26 0.971795
27 1.000000
28 1.000000
29 1.000000
30 1.000000
31 1.000000
32 1.000000
33 1.000000
34 1.000000
35 1.000000
36 1.000000
37 1.000000
38 1.000000
39 1.000000
40 1.000000
41 1.000000
42 1.000000
43 1.000000
44 1.000000
45 1.000000
46 1.000000
47 1.000000
48 0.963333
49 0.963333
50 0.963333
51 0.963333
52 0.969444
53 0.955556
54 0.955556
55 0.955556
56 0.955556
57 0.955556
58 0.955556
59 0.955556
60 0.955556
61 0.955556
62 0.960000
63 0.960000
64 0.960000
65 0.960000
66 0.961905
67 0.961905
68 0.954762
69 0.950000
70 0.945238
71 0.942857
72 0.942857
73 0.942857
74 0.942857
75 0.942857
76 0.942857
77 0.925714
78 0.856190
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81 0.936842
82 0.936842
83 0.936842
84 0.906667
85 0.942857
86 0.942857
87 0.942857
88 0.945455
89 0.945455
90 0.945455
91 0.945455
92 0.945455
93 0.945455
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95 0.945455
96 0.945455
97 0.945455
98 0.945455
99 0.945455
100 0.945455
101 0.945455
102 0.945455
103 0.945455
104 0.945455
105 0.945455
106 0.945455
107 0.945455
108 0.945455
109 0.945455
110 0.950000
111 0.919203
112 0.945455
113 0.945455
114 0.945455
115 0.945455
116 0.940909
117 1.000000
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138 0.982684
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140 0.952964
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142 0.854654
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144 0.703801
145 1.000000
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147 0.984211
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154 0.948718
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159 0.948718
160 0.948718
161 0.950000
162 0.950000
163 0.937317
164 0.938792
165 0.938792
166 0.940199
167 0.940199
168 0.940199
169 0.940199
170 0.940253
171 0.940253
172 0.940253
173 0.941522
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175 0.941522
176 0.941522
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183 0.946102
184 0.946102
185 0.946102
186 0.946102
187 0.946102
188 0.902429
189 0.821266
190 0.715856
191 0.639517
192 1.000000
193 0.713333
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195 0.891209
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231 0.937062
232 0.937062
233 0.877631
234 0.877631
235 0.877631
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238 0.877631
239 0.877631
240 0.877631
241 0.880751
242 0.880751
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244 0.880751
245 0.880751
247 0.874564
248 0.874564
249 0.874564
250 0.714286
253 0.934754
254 0.934754
255 0.938033
256 0.938033
257 0.938033
258 0.938033
259 0.941311
260 0.941311
261 0.941311
262 0.941311
263 0.938033
264 0.934754
265 0.934754
266 0.934754
267 0.934754
268 0.934754
269 0.934754
270 0.934754
271 0.975820
272 0.983607
273 0.990164
274 0.990164
275 0.990164
277 0.990164
278 0.990164
279 0.990164
280 0.990164
281 0.990164
282 0.990164
283 0.990164
284 0.990164
285 0.990164
286 0.928315
287 0.931388
288 0.961396
289 0.930927
290 0.930927
291 0.930927
292 0.993443
293 0.993443
294 0.993443
295 0.993443
296 0.993443
297 0.993443
298 0.993443
299 0.993443
300 0.993443
301 0.993443
302 0.996721
303 1.000000
304 1.000000
305 1.000000
306 1.000000
307 1.000000
308 1.000000
309 1.000000
310 1.000000
311 1.000000
312 1.000000
313 1.000000
314 1.000000
315 1.000000
316 1.000000
317 1.000000
318 0.967213
319 0.936013
320 0.936013
321 0.936013
322 0.967213
323 0.967213
324 0.967213
325 0.967213
326 0.944945
327 0.894737
328 0.967213
329 0.967213
330 0.967213
331 0.967213
332 0.967213
333 0.966667
334 0.966667
335 0.966667
336 0.966102
337 0.966102
338 0.966102
339 0.965517
340 1.000000
341 1.000000
342 1.000000
343 1.000000
344 1.000000
345 1.000000
346 1.000000
347 0.990323
348 1.000000
349 1.000000
350 0.951111
351 1.000000
#END

345
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_col.scr.csv Normal file
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#COL_NUMBER,#RES_PAIR_COLUMN_SCORE
1,1.000000
2,1.000000
3,1.000000
4,1.000000
7,0.924242
8,0.969697
9,0.969697
10,1.000000
11,1.000000
12,1.000000
13,1.000000
14,1.000000
15,1.000000
16,1.000000
17,1.000000
18,1.000000
19,1.000000
20,1.000000
21,1.000000
22,1.000000
23,1.000000
24,1.000000
25,1.000000
26,0.971795
27,1.000000
28,1.000000
29,1.000000
30,1.000000
31,1.000000
32,1.000000
33,1.000000
34,1.000000
35,1.000000
36,1.000000
37,1.000000
38,1.000000
39,1.000000
40,1.000000
41,1.000000
42,1.000000
43,1.000000
44,1.000000
45,1.000000
46,1.000000
47,1.000000
48,0.963333
49,0.963333
50,0.963333
51,0.963333
52,0.969444
53,0.955556
54,0.955556
55,0.955556
56,0.955556
57,0.955556
58,0.955556
59,0.955556
60,0.955556
61,0.955556
62,0.960000
63,0.960000
64,0.960000
65,0.960000
66,0.961905
67,0.961905
68,0.954762
69,0.950000
70,0.945238
71,0.942857
72,0.942857
73,0.942857
74,0.942857
75,0.942857
76,0.942857
77,0.925714
78,0.856190
79,0.936842
80,0.936842
81,0.936842
82,0.936842
83,0.936842
84,0.906667
85,0.942857
86,0.942857
87,0.942857
88,0.945455
89,0.945455
90,0.945455
91,0.945455
92,0.945455
93,0.945455
94,0.945455
95,0.945455
96,0.945455
97,0.945455
98,0.945455
99,0.945455
100,0.945455
101,0.945455
102,0.945455
103,0.945455
104,0.945455
105,0.945455
106,0.945455
107,0.945455
108,0.945455
109,0.945455
110,0.950000
111,0.919203
112,0.945455
113,0.945455
114,0.945455
115,0.945455
116,0.940909
117,1.000000
118,1.000000
119,1.000000
120,0.909091
121,0.909091
122,1.000000
123,1.000000
124,1.000000
125,1.000000
126,1.000000
127,1.000000
128,1.000000
129,1.000000
130,1.000000
131,1.000000
132,1.000000
133,1.000000
134,1.000000
135,1.000000
136,1.000000
137,1.000000
138,0.982684
139,0.982684
140,0.952964
141,0.904167
142,0.854654
143,0.837143
144,0.703801
145,1.000000
146,1.000000
147,0.984211
148,0.948718
149,0.948718
150,0.948718
151,0.948718
152,0.948718
153,0.948718
154,0.948718
156,0.948718
157,0.948718
158,0.948718
159,0.948718
160,0.948718
161,0.950000
162,0.950000
163,0.937317
164,0.938792
165,0.938792
166,0.940199
167,0.940199
168,0.940199
169,0.940199
170,0.940253
171,0.940253
172,0.940253
173,0.941522
174,0.941522
175,0.941522
176,0.941522
177,0.941522
178,0.941522
179,0.946102
180,0.946102
181,0.946102
182,0.946102
183,0.946102
184,0.946102
185,0.946102
186,0.946102
187,0.946102
188,0.902429
189,0.821266
190,0.715856
191,0.639517
192,1.000000
193,0.713333
194,0.693407
195,0.891209
196,0.938667
197,0.927866
198,0.927866
199,0.927866
200,0.927866
201,0.927866
202,0.927866
203,0.924165
204,0.923690
205,0.926299
206,0.924578
207,0.907477
208,0.898403
209,0.917647
210,0.949911
211,0.932707
212,0.932707
213,0.932707
214,0.933817
215,0.930395
216,0.930395
217,0.933729
218,0.937062
219,0.937062
220,0.937062
221,0.937062
222,0.937062
223,0.937062
224,0.937062
225,0.937062
226,0.933729
227,0.933729
228,0.933729
229,0.933729
230,0.935395
231,0.937062
232,0.937062
233,0.877631
234,0.877631
235,0.877631
236,0.877631
237,0.877631
238,0.877631
239,0.877631
240,0.877631
241,0.880751
242,0.880751
243,0.880751
244,0.880751
245,0.880751
247,0.874564
248,0.874564
249,0.874564
250,0.714286
253,0.934754
254,0.934754
255,0.938033
256,0.938033
257,0.938033
258,0.938033
259,0.941311
260,0.941311
261,0.941311
262,0.941311
263,0.938033
264,0.934754
265,0.934754
266,0.934754
267,0.934754
268,0.934754
269,0.934754
270,0.934754
271,0.975820
272,0.983607
273,0.990164
274,0.990164
275,0.990164
277,0.990164
278,0.990164
279,0.990164
280,0.990164
281,0.990164
282,0.990164
283,0.990164
284,0.990164
285,0.990164
286,0.928315
287,0.931388
288,0.961396
289,0.930927
290,0.930927
291,0.930927
292,0.993443
293,0.993443
294,0.993443
295,0.993443
296,0.993443
297,0.993443
298,0.993443
299,0.993443
300,0.993443
301,0.993443
302,0.996721
303,1.000000
304,1.000000
305,1.000000
306,1.000000
307,1.000000
308,1.000000
309,1.000000
310,1.000000
311,1.000000
312,1.000000
313,1.000000
314,1.000000
315,1.000000
316,1.000000
317,1.000000
318,0.967213
319,0.936013
320,0.936013
321,0.936013
322,0.967213
323,0.967213
324,0.967213
325,0.967213
326,0.944945
327,0.894737
328,0.967213
329,0.967213
330,0.967213
331,0.967213
332,0.967213
333,0.966667
334,0.966667
335,0.966667
336,0.966102
337,0.966102
338,0.966102
339,0.965517
340,1.000000
341,1.000000
342,1.000000
343,1.000000
344,1.000000
345,1.000000
346,1.000000
347,0.990323
348,1.000000
349,1.000000
350,0.951111
351,1.000000
1 #COL_NUMBER #RES_PAIR_COLUMN_SCORE
2 1 1.000000
3 2 1.000000
4 3 1.000000
5 4 1.000000
6 7 0.924242
7 8 0.969697
8 9 0.969697
9 10 1.000000
10 11 1.000000
11 12 1.000000
12 13 1.000000
13 14 1.000000
14 15 1.000000
15 16 1.000000
16 17 1.000000
17 18 1.000000
18 19 1.000000
19 20 1.000000
20 21 1.000000
21 22 1.000000
22 23 1.000000
23 24 1.000000
24 25 1.000000
25 26 0.971795
26 27 1.000000
27 28 1.000000
28 29 1.000000
29 30 1.000000
30 31 1.000000
31 32 1.000000
32 33 1.000000
33 34 1.000000
34 35 1.000000
35 36 1.000000
36 37 1.000000
37 38 1.000000
38 39 1.000000
39 40 1.000000
40 41 1.000000
41 42 1.000000
42 43 1.000000
43 44 1.000000
44 45 1.000000
45 46 1.000000
46 47 1.000000
47 48 0.963333
48 49 0.963333
49 50 0.963333
50 51 0.963333
51 52 0.969444
52 53 0.955556
53 54 0.955556
54 55 0.955556
55 56 0.955556
56 57 0.955556
57 58 0.955556
58 59 0.955556
59 60 0.955556
60 61 0.955556
61 62 0.960000
62 63 0.960000
63 64 0.960000
64 65 0.960000
65 66 0.961905
66 67 0.961905
67 68 0.954762
68 69 0.950000
69 70 0.945238
70 71 0.942857
71 72 0.942857
72 73 0.942857
73 74 0.942857
74 75 0.942857
75 76 0.942857
76 77 0.925714
77 78 0.856190
78 79 0.936842
79 80 0.936842
80 81 0.936842
81 82 0.936842
82 83 0.936842
83 84 0.906667
84 85 0.942857
85 86 0.942857
86 87 0.942857
87 88 0.945455
88 89 0.945455
89 90 0.945455
90 91 0.945455
91 92 0.945455
92 93 0.945455
93 94 0.945455
94 95 0.945455
95 96 0.945455
96 97 0.945455
97 98 0.945455
98 99 0.945455
99 100 0.945455
100 101 0.945455
101 102 0.945455
102 103 0.945455
103 104 0.945455
104 105 0.945455
105 106 0.945455
106 107 0.945455
107 108 0.945455
108 109 0.945455
109 110 0.950000
110 111 0.919203
111 112 0.945455
112 113 0.945455
113 114 0.945455
114 115 0.945455
115 116 0.940909
116 117 1.000000
117 118 1.000000
118 119 1.000000
119 120 0.909091
120 121 0.909091
121 122 1.000000
122 123 1.000000
123 124 1.000000
124 125 1.000000
125 126 1.000000
126 127 1.000000
127 128 1.000000
128 129 1.000000
129 130 1.000000
130 131 1.000000
131 132 1.000000
132 133 1.000000
133 134 1.000000
134 135 1.000000
135 136 1.000000
136 137 1.000000
137 138 0.982684
138 139 0.982684
139 140 0.952964
140 141 0.904167
141 142 0.854654
142 143 0.837143
143 144 0.703801
144 145 1.000000
145 146 1.000000
146 147 0.984211
147 148 0.948718
148 149 0.948718
149 150 0.948718
150 151 0.948718
151 152 0.948718
152 153 0.948718
153 154 0.948718
154 156 0.948718
155 157 0.948718
156 158 0.948718
157 159 0.948718
158 160 0.948718
159 161 0.950000
160 162 0.950000
161 163 0.937317
162 164 0.938792
163 165 0.938792
164 166 0.940199
165 167 0.940199
166 168 0.940199
167 169 0.940199
168 170 0.940253
169 171 0.940253
170 172 0.940253
171 173 0.941522
172 174 0.941522
173 175 0.941522
174 176 0.941522
175 177 0.941522
176 178 0.941522
177 179 0.946102
178 180 0.946102
179 181 0.946102
180 182 0.946102
181 183 0.946102
182 184 0.946102
183 185 0.946102
184 186 0.946102
185 187 0.946102
186 188 0.902429
187 189 0.821266
188 190 0.715856
189 191 0.639517
190 192 1.000000
191 193 0.713333
192 194 0.693407
193 195 0.891209
194 196 0.938667
195 197 0.927866
196 198 0.927866
197 199 0.927866
198 200 0.927866
199 201 0.927866
200 202 0.927866
201 203 0.924165
202 204 0.923690
203 205 0.926299
204 206 0.924578
205 207 0.907477
206 208 0.898403
207 209 0.917647
208 210 0.949911
209 211 0.932707
210 212 0.932707
211 213 0.932707
212 214 0.933817
213 215 0.930395
214 216 0.930395
215 217 0.933729
216 218 0.937062
217 219 0.937062
218 220 0.937062
219 221 0.937062
220 222 0.937062
221 223 0.937062
222 224 0.937062
223 225 0.937062
224 226 0.933729
225 227 0.933729
226 228 0.933729
227 229 0.933729
228 230 0.935395
229 231 0.937062
230 232 0.937062
231 233 0.877631
232 234 0.877631
233 235 0.877631
234 236 0.877631
235 237 0.877631
236 238 0.877631
237 239 0.877631
238 240 0.877631
239 241 0.880751
240 242 0.880751
241 243 0.880751
242 244 0.880751
243 245 0.880751
244 247 0.874564
245 248 0.874564
246 249 0.874564
247 250 0.714286
248 253 0.934754
249 254 0.934754
250 255 0.938033
251 256 0.938033
252 257 0.938033
253 258 0.938033
254 259 0.941311
255 260 0.941311
256 261 0.941311
257 262 0.941311
258 263 0.938033
259 264 0.934754
260 265 0.934754
261 266 0.934754
262 267 0.934754
263 268 0.934754
264 269 0.934754
265 270 0.934754
266 271 0.975820
267 272 0.983607
268 273 0.990164
269 274 0.990164
270 275 0.990164
271 277 0.990164
272 278 0.990164
273 279 0.990164
274 280 0.990164
275 281 0.990164
276 282 0.990164
277 283 0.990164
278 284 0.990164
279 285 0.990164
280 286 0.928315
281 287 0.931388
282 288 0.961396
283 289 0.930927
284 290 0.930927
285 291 0.930927
286 292 0.993443
287 293 0.993443
288 294 0.993443
289 295 0.993443
290 296 0.993443
291 297 0.993443
292 298 0.993443
293 299 0.993443
294 300 0.993443
295 301 0.993443
296 302 0.996721
297 303 1.000000
298 304 1.000000
299 305 1.000000
300 306 1.000000
301 307 1.000000
302 308 1.000000
303 309 1.000000
304 310 1.000000
305 311 1.000000
306 312 1.000000
307 313 1.000000
308 314 1.000000
309 315 1.000000
310 316 1.000000
311 317 1.000000
312 318 0.967213
313 319 0.936013
314 320 0.936013
315 321 0.936013
316 322 0.967213
317 323 0.967213
318 324 0.967213
319 325 0.967213
320 326 0.944945
321 327 0.894737
322 328 0.967213
323 329 0.967213
324 330 0.967213
325 331 0.967213
326 332 0.967213
327 333 0.966667
328 334 0.966667
329 335 0.966667
330 336 0.966102
331 337 0.966102
332 338 0.966102
333 339 0.965517
334 340 1.000000
335 341 1.000000
336 342 1.000000
337 343 1.000000
338 344 1.000000
339 345 1.000000
340 346 1.000000
341 347 0.990323
342 348 1.000000
343 349 1.000000
344 350 0.951111
345 351 1.000000

22466
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_res.scr Normal file
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66
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_seq.scr Normal file
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@ -0,0 +1,66 @@
#ROW_NUMBER #RES_PAIR_SEQUENCE_SCORE
1 0.972665
2 0.972354
3 0.973047
4 0.971883
5 0.972259
6 0.973419
7 0.973419
8 0.973315
9 0.973365
10 0.972038
11 0.971994
12 0.971994
13 0.967681
14 0.971994
15 0.974957
16 0.972037
17 0.972951
18 0.972194
19 0.972446
20 0.972026
21 0.972029
22 0.972029
23 0.972029
24 0.971957
25 0.971957
26 0.617739
27 0.972841
28 0.963693
29 0.972556
30 0.971425
31 0.985244
32 0.975988
33 0.970810
34 0.959558
35 0.973280
36 0.973217
37 0.973217
38 0.970410
39 0.972243
40 0.969683
41 0.523179
42 0.971567
43 0.972529
44 0.975371
45 0.975130
46 0.972646
47 0.972568
48 0.973136
49 0.974294
50 0.964843
51 0.965645
52 0.965526
53 0.964671
54 0.901158
55 0.894595
56 0.894595
57 0.834473
58 0.822077
59 0.818130
60 0.964955
61 0.378007
62 0.964717
63 0.972129
64 0.592674
#END

66
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_seq.scr_with_Names Normal file
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SEQUENCE_NAME SEQUENCE_SCORE
Sr_rh_Pfue_XX_Sr_rh_Pfue_Contig_17829_Len879_Cov11_OG5_126554 0.972665
Sr_rh_PspA_XX_Sr_rh_PspA-LKH285_9262_Len672_Cov8_OG5_126554 0.972354
Sr_rh_Al01_XX_Sr_rh_Al01-LKH192_6022_Len1275_Cov17_OG5_126554 0.973047
Sr_rh_Hg01_XX_Sr_rh_Hg01-LKH304_11955_Len555_Cov4_OG5_126554 0.971883
Sr_rh_HgpA_XX_Sr_rh_HgpA-LKH314_3374_Len948_Cov16_OG5_126554 0.972259
Sr_rh_Nn01_XX_Sr_rh_Nn01_Contig_13892_Len1674_Cov284_OG5_126554 0.973419
Sr_rh_Nn02_XX_Sr_rh_Nn02_Contig_13025_Len1674_Cov94_OG5_126554 0.973419
Sr_rh_Nn10_XX_Sr_rh_Nn10_Contig_21569_Len1563_Cov139_OG5_126554 0.973315
Sr_rh_Emac_XX_Sr_rh_Emac_Contig_11467_Len1551_Cov70_OG5_126554 0.973365
Sr_rh_Al02_XX_Sr_rh_Al02-LKH279_3746_Len555_Cov10_OG5_126554 0.972038
Sr_rh_As04_XX_Sr_rh_As04-LKH296_1295_Len732_Cov6_OG5_126554 0.971994
Sr_rh_As01_XX_Sr_rh_As01-LKH294_6033_Len771_Cov5_OG5_126554 0.971994
Sr_rh_As05_XX_Sr_rh_As05-LKH295_5839_Len819_Cov11_OG5_126554 0.967681
Sr_rh_As03_XX_Sr_rh_As03-LKH313_6888_Len702_Cov8_OG5_126554 0.971994
Sr_rh_As02_XX_Sr_rh_As02-LKH324_15814_Len489_Cov16_OG5_126554 0.974957
Sr_rh_Ts02_XX_Sr_rh_Ts02-LKH320_6145_Len708_Cov5_OG5_126554 0.972037
Sr_rh_Calb_XX_Contig_7745_Len1683_Cov38_OG5_126554 0.972951
Sr_rh_RspA_XX_Sr_rh_RspA-LKH290_4671_Len1062_Cov25_OG5_126554 0.972194
Sr_rh_FF02_XX_Sr_rh_FF02_Contig_1649_Len957_Cov10_OG5_126554 0.972446
Sr_rh_Hind_XX_Contig_12080_Len1260_Cov53_OG5_126554 0.972026
Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_20076_Len1179_Cov40_OG5_126554 0.972029
Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19982_Len1182_Cov79_OG5_126554 0.972029
Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_20382_Len1167_Cov94_OG5_126554 0.972029
Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19888_Len1155_Cov80_OG5_126554 0.971957
Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19044_Len1188_Cov38_OG5_126554 0.971957
Sr_rh_Pina_XX_Contig_8772_Len858_Cov33_OG5_126554 0.617739
Sr_rh_Slin_XX_Contig_3275_Len1587_Cov14_OG5_126554 0.972841
Sr_rh_FF02_XX_Sr_rh_FF02_Contig_3920_Len636_Cov5_OG5_126554 0.963693
Sr_rh_PspA_XX_Sr_rh_PspA-LKH285_926_Len1191_Cov12_OG5_126554 0.972556
Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_3536_Len591_Cov9_OG5_126554 0.971425
Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_14775_Len321_Cov15_OG5_126554 0.985244
Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_8241_Len441_Cov6_OG5_126554 0.975988
Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_5955_Len525_Cov17_OG5_126554 0.970810
Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_6707_Len579_Cov20_OG5_126554 0.959558
Sr_rh_Tr01_XX_Sr_rh_Tr01_Contig_9807_Len483_Cov16_OG5_126554 0.973280
Sr_rh_Bv04_XX_Sr_rh_Bv04_Contig_12687_Len1599_Cov64_OG5_126554 0.973217
Sr_rh_Bv05_XX_Sr_rh_Bv05_Contig_10933_Len1599_Cov61_OG5_126554 0.973217
Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_10605_Len690_Cov15_OG5_126554 0.970410
Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_18259_Len648_Cov21_OG5_126554 0.972243
Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_13702_Len678_Cov20_OG5_126554 0.969683
Sr_rh_Ssp1_XX_Contig_1307_Len810_Cov61_OG5_126554 0.523179
Sr_rh_As01_XX_Sr_rh_As01-LKH294_2597_Len693_Cov4_OG5_126554 0.971567
Sr_rh_As03_XX_Sr_rh_As03-LKH313_10378_Len717_Cov12_OG5_126554 0.972529
Sr_rh_As05_XX_Sr_rh_As05-LKH295_19507_Len444_Cov9_OG5_126554 0.975371
Sr_rh_As02_XX_Sr_rh_As02-LKH324_14147_Len456_Cov8_OG5_126554 0.975130
Sr_rh_Emar_XX_Contig_8285_Len723_Cov12_OG5_126554 0.972646
Sr_rh_Hg01_XX_Sr_rh_Hg01-LKH304_7769_Len600_Cov7_OG5_126554 0.972568
Sr_rh_Hind_XX_Contig_2010_Len1647_Cov26_OG5_126554 0.973136
Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_6436_Len489_Cov15_OG5_126554 0.974294
Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_6395_Len597_Cov13_OG5_126554 0.964843
Sr_rh_Sspa_XX_Contig_5747_Len702_Cov21_OG5_126554 0.965645
Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_256_Len708_Cov14_OG5_126554 0.965526
Sr_rh_QjpA_XX_Sr_rh_QjpA-LKH288_9889_Len564_Cov19_OG5_126554 0.964671
Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_13181_Len408_Cov3_OG5_126554 0.901158
Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_6167_Len516_Cov7_OG5_126554 0.894595
Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_190_Len516_Cov4_OG5_126554 0.894595
Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_6601_Len603_Cov10_OG5_126554 0.834473
Sr_rh_Tr01_XX_Sr_rh_Tr01_Contig_5346_Len690_Cov14_OG5_126554 0.822077
Sr_rh_Tr02_XX_Sr_rh_Tr02_Contig_17503_Len567_Cov70_OG5_126554 0.818130
Sr_rh_FF02_XX_Sr_rh_FF02_Contig_5686_Len600_Cov5_OG5_126554 0.964955
Sr_rh_Hhir_XX_Contig_20411_Len594_Cov57_OG5_126554 0.378007
Sr_rh_Pfue_XX_Sr_rh_Pfue_Contig_20190_Len552_Cov3_OG5_126554 0.964717
Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_13699_Len690_Cov51_OG5_126554 0.972129
Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_18519_Len663_Cov18_OG5_126554 0.592674
#END

2018
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_seq_pair.scr Normal file
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23318
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.Guidance_res_pair_res.html Normal file
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128
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.Without_low_SP_Col Normal file
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@ -0,0 +1,128 @@
>seq0000
-------------------------------------------------------------------------------------------------------------ISFDASVFKWGELAAHMKVVDGFADEMIAKCR-----YDLLSKFI-ISTRELRDILLNFIIAGRDTTAQLLSWCSYELCRNP----EIQSKIYDELK----TYQTVKMKYLEAVLYESLRLHPSVPNMTRFATRDI-QLN---NTIRKGDAVLVSNYVLGRLQKWW-DNPYKFDPMRFYYKAHEYTNFNIPPRLCLGKHVAMMEAKIGLATILKDYR-MELKPGPMKNGCYINFIDRLSE--
>seq0001
--------------------------------------------------------------------------------------------------------------------------------------------------YDLLTKFI-ISTRELRDILLNFIIAGRDTTAQLLSWCSYELCLNP----EIQDKVYEELS----TYQSVKMKYLEAVLYEALRLHPSVPNMSRFATRDI-QLS---DVIRKGDCILVSNYVLGRLHQWW-ENALQFDPMRFYYKAHEYTNFNVPPRLCLGKHVALMEAKIALATVLKDYR-MELKPGPMKNGCFINFIDRSTK--
>seq0002
-----------------IDLLFDADKSPVLGKGIFVADGNIWKKHRAIASRMFTVRSLRDYMFEVFMDTTDAFIDKCELYTQCVDIYDMYNRLTLEAFTMVAFGVPLGVISFDDGQTRVRTLKKHEQIINEFANTIIQKKRKHF--YDIMSLFL-VSDAELRDVALNFIVAGRDTTAQLLSWFSYAMSENK----GVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAKVDI-ELP---DVIRKGDAIIIPTFAMGRMPWIW-KDPLKFNPDRFNFTPSQYPAFNIPPRLCLGKHVALMEAKIAIIKLFKKYK-LEAVPSVMKYGFKVKLIPR-----
>seq0003
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLSWFSYAMSENK----GVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAKVDI-ELP---DVIRKGDAIIIPTFAMGRMPWIW-KDPLKFNPDRFNFTPSQYPAFNIPPRLCLGKHVALMEAKIAIIKLFKKYK-LEAVPSVMKYGFKVNLIPR-----
>seq0004
-------------------------------------------------------------------------------------------------------------ISFDDGQTRVRTLKKHVQIINEFANTIIQKKRKHF--YDIMSLFL-VSDAELRDVALNFIVAGRDTTAQLLSWFSYAMSENK----GVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAKVDI-ELP---DVIRKGDAIIIPTFAMGRMPWIW-KDPLKFNPDRFNFTPSQYPAFNIPPRLCLGKHVALMEAKIAIIKLFKKYK-LEAVPSVMKYGFKVKLIPR-----
>seq0005
PYFG--HNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTLKKHINIINEFANEFIQKKREHL--YDIMWLFL-ISDEELRDIALNFIIAGRDTTAQLLSWCTYLLSENQ----HVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDI-ALP---DIIRKGDGIVVPTFAMGRMPWIW-KDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYK-LEPVSSVMKNGFKVKLIPRES---
>seq0006
PYFG--HNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTLKKHINIINEFANEFIQKKREHL--YDIMWLFL-ISDEELRDIALNFIIAGRDTTAQLLSWCTYLLSENQ----HVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDI-ALP---DIIRKGDGIVVPTFAMGRMPWIW-KDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYK-LEPVSSVMKNGFKVKLIPRES---
>seq0007
PYFG--HNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTLKKHINIINEFANEFIQKKREHL--YDIMWLFL-ISDEELRDIALNFIIAGRDTTAQLLSWCTYLLSENQ----HVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDI-ALP---DIIRKGDGIVVPTFAMGRMPWIW-KDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYK-LEPVSSVMKNGFKVKLIPR-----
>seq0008
PYFG--HHFIFVVDPALIDLLFDADKRPILGRGIFTSDGLLWKKHRSIASRMFTVRSLRDYMFQVFRDTTDTFMSKCEICANHVDIYDMFHRLTLEAFTQVAFGVSLGVIAFDDAQTKARTLKAHVKVINEFAERIIRSKRKDY--YDIMSLFL-ISDQELRDMALNFIIAGRDTTAQLLSWFSYAMTENA----DVESKLLAELRQAVADYDAIDCTYLENALLESLRLRPSVPHLVRYAKVDI-DLP---ETIRKGNGIVIPTFAMGRMPWIW-KDPLKFDPDRFNYTASQYPAFNIPPRLCLGKHVALLEAKIAVVKLFTKYK-LVPMPSVMKNGFKVKLIPRE----
>seq0009
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LMSWFSYAMTENE----EVEKKIVEEIRLYVGDYNTINCQYLENAFLESLRMRPVLPHLVRYAKVDI-ALP---HVIRKGDGLIVPSFAMGRMPWIW-KDPNTFNPDRFKYTPAQYPAFNIPPRLCLGKHVALLEAKIMIIKLFKKYK-LEAVPNIMKNGLKVRLIPRGK---
>seq0010
--------------------------------------------------------------------------------------------------------------------------------------------------YDLMSLFL-ISDDELRDVALNFILAGRDTTAQLMSWFSYAMTENE----EVEKKIVEEIRLYVGDYNTINCQYLENAFLESLRMRPVLPHLVRYAKVDI-ALP---HVIRKGDGLIVPSFAMGRMPWIW-KDPNTFNPDRFKYTPAQYPAFNIPPRLCLGKHVALLEAKIMIIKLFKKYK-LEAVPNIMKNGLKVRLIPRGK---
>seq0011
--------------------------------------------------------------------------------------------------------------------------------------------------YDLMSLFL-VSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENE----EVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDI-TLP---DVVRKGDGIIIPTYAMGRMPWIW-KDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYK-LEALPSVMKNGFKVRLVPRCK---
>seq0012
-----------------------------------------------------------------------------------------------------------------------RS----------------SSKKQHF--YDLMSLFL-VSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENE----EVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDI-TLP---DVVRKGDGIIIPTYAMGRMPWIW-KDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYK-LDALPSVMKNGFKVRLVPRCK---
>seq0013
--------------------------------------------------------------------------------------------------------------------------------------------------YDLMSLFL-VSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENE----EVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDI-TLP---DVVRKGDGIIIPTYAMGRMPWIW-KDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYK-LEALPSVMKNGFKVRLVPRCK---
>seq0014
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNQFIGNYDMLNCQYLESSFYESLRLQPSLPHLVRYAKVDI-PLP---DVIRKGDGVIVPMYAMGRMPWLW-KNPDKFDPERFNYTPAEYPAFNIPPRVCLGKHVALMEAKIAVIKLLKKFK-LEALPTVMKNGFKVKLIPRCK---
>seq0015
--------------------------------------------------------------------------------------------------------------------------------------------------YDLMSLFL-ITDDELRDIALNFIIAGRDTTAQLLSWFSYCITDNK----QIEENIMNEINQYIGDYNVIQCEYLESSFLETLRLRPSVPHLVRYAKIDI-KLP---DIIRKGDGIVIPTYAMGRMPWIW-NDPLKFNPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYK-LQPLPSIMRNGFKVKLIPRDSK--
>seq0016
PLIG--HNFIFMVSPKLIDLLFDSNKLPILGHGIFNADGQLWKKHRSIASRMFTVRSLRDYMFNVFVDTTDKWILKSEILKNFVDIYNMNLRLTMEAFTKVAFGVDLGTIAMDDGITKLKSLKKHSHILNDFAKKVIDDRKS----YDLLSLFL-VNVSELRDVCINFIVAGRDTTAQLLSWFMYELS-NP----KIEEKIMEEINEYIGEYKQIECEYLENCLLETLRLRPSVPHLVRYAKCDI-ELPG--HIIRKGDGIVIPTYAMGRMPWIW-KDPLKFNPDRFKHPPSKYPAFNIPPRLCLGKHVALLEAKIAIVKLFKKYK-LVKLPSVMKYGYKVKLEPRNQ---
>seq0017
-----------------------------------------------------------------FNDTTDDFIAKCEICEMSVNIYDMFHRLTLEAFTMVAFGVPLGVISFDEGRTKWRTLKKHLKIINEFASNIIHKKRQQF--YDLISLFM-ITDEELRDIALNFIIAGRDTTAQLLSWFSYLVTENE----SVESKIMNEINECVADYNMVKCEYLENAFLETLRLRPSVPHLVRYAKTDI-KLP---HIIRKGDGIVIPTFAMGRMPWIW-SNPLEFNPDRFKFTPAEYPAFNLPPRLCLGKHVALLEAKIAIIKLFKKYK-LEAVPSVMKYGFNVKLVPRKQET-
>seq0018
---------------------------------------------------------------------------------------NMYNRLTLEAFTQVAFGVPLGCISFDRGQSKLRELRKHLKVVNEFVSKVIVERK-----FDLLSLFL-TSDKELRDVAMNFIVAGRDTTAQLLSWFSYLISENQ----ECEAKVTKEIMEHVPTYEMVKCQYLENALLETLRLRPSVPHLVRFAKVDI-LLP---HVIRKGDGIVVPTYAMGRMPSLW-KDPLKFDPSRFEYTPSEYPAFNIPPRLCLGKHVALLESKIAIIRLFRKFK-LEPLSSIMKNGFRVKLVPR-----
>seq0019
--------------------------KPVFGVGILSTDGKLWKKYRSIGSRIFTVRSLRDFMYEVFDSTSSALVKKSLIQEQFVDLYNMFNRLTLEAFTHIAFGVSMKTIAFDRSQWDFKELKKHAGILNDKIGLLVRQRKEQY--KDLLTLYF-ATDLELRDLIMNFVVAGRDTTAQLCSWFSYEISEHA----HVDARILEEIHTYVGTYQMVKLKYMESCFLETLRLHPSVPHLVRFALVDI-KLP---HVIRKGDGVVVPVYAMGRMPWLW-PKPLVFDPMRFEYTPALFPAFNIPPRLCLGKHLALLEAKVVMVKILRKYR-IVARESIMKDGFYARLQPRAQQQQ
>seq0020
---------------------------------------------------MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>seq0021
---------------------------------------------------MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>seq0022
---------------------------------------------------MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>seq0023
-------------------------------------------------------------MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>seq0024
-------------------------------------------------------------MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>seq0025
PFFG--HNFIFLCDPKLIDLIFDAEKKPMLGHGIFLSDGARWKKQRSIASRMFTVRSLRDYMFEVFVDTSNTFIDKCLIQSEEIDIYDMFNRLTLEAFTEVAFGVSLNIMSFDRGQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>seq0026
PFFG--HNFIFLCDPKLIDFVFDANKKPLLGHGIFVSDGAKWKKHRSIASHMFTVRSLREYMFEVFVDTSNTFLDKCLIQSKEIDIYNMFNRLTLEAFTKVAFGVSLNIISFDRGQTAWRELHIHTAIIEQQISEVIQRNVN----YDLLSLFL-ASENELRDVAMNFIIAGRDTTAQLLSWFSYLLT-NP----KVEQMIVDEINANIGDYEMVKCQYLENAFLETLRLHPSVPHLVRYAKTDI-PLL---NIIRKGDCIIIPTYAMGRMPWLW-NNALTFDPSRFEYSPAQYPAFNIPPRLCLGKHVALLEAKIVIIKLLRKYR-IVAIPSVMKNGFKVRLELR-----
>seq0027
-------------------------------------------------------------------------------------------------------------------------------------------------------------------ITMNFIIAGKDTTAQLLSWFFYVITHNR--SDEVISNILNEFDAQSNGYEKMKLQYLEYCLLETLRLFPSVPHLIRFAKSDIFRVD---YTIRKGDGIVIPLYAMGRMPWIW-ENPDEFDPLRFQFLPSEYPAFNIPPRLCLGKHVALMEAKIAVIKLLKKYR-FVTQESPMKNGYKVKLIPK-----
>seq0028
--------------------------LPILGRGIIASDGKIWKRHRKVASRMFTLSSLRDYMFEVFNSTTDTLMDKMLIHKDHVDLYDMYNRLTLEAFTEVAFGVKLGVISFDRGASKFKELLFHEKTINNMVWDLVHKCKERL--CDLLSLFI-ITDVELRDITINFVIAGRDTTAQLLSWFSYLIT-WP----QVEKKVLKEIKEVFPDYGKIKLEYLENAFLETLRMHPSVPHLVREAKVDI-HLP---HIIRKGDGVIVPTYAMGRLPWLW-EKPEEMNPDRFQFTPSEYPAFNIPPRLCLGKHVSLMEAKIQIVKLLPKYK-FEPLPSAMKNGFKVKLVPRDTQ--
>seq0029
----------------------------------------------------------------------------------------------------------------------------------------------------------------LRDVAMNFIIAGRDTTAQLLSWFMYLFT-NK----EIEKPILNEINSII-NYIDVKLKYLENCFFETLRLRPAVPHLLRFAKTDI-QLK---YVIRKGDGICIPTFAMNRMPWIW-DNPFKFDPNRFDQSPSKYVAFNIPPRLCLGKHVALLEAKLLVLELLTRFK-IEPVLSAMRNGFKVYFHPR-----
>seq0030
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YVIRKGDGICIPTFAMNRMPWIW-DNPFKFDPNRFDQSPSKYVAFNIPPRLCLGKHVALLEAKLLVLELLTRFK-IEPVLSAMRNGFKVYFHPR-----
>seq0031
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IKLNYLENSFLETLRLRPSVPHLVRKAVVDI-KIP---HIIRKDDTILVPTYAMGRMEWIW-KDALKFDPTRFEYSPSKYPAFNIKPRLCLGKHVALLEAKIAIVKLFKKYK-FIPIESLMKNGFRVKLIKRQT---
>seq0032
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NQ----HVEDKIMDEINQHI-NYNTIKLNYLENSFLETLRLRPSVPHLVRKAVVDI-KIP---HIIRKDDTILVPTYAMGRMEWIW-KDALKFDPTRFEYSPSKYPAFNIKPRLCLGKHVALLEAKIAIVKLFKKYK-FIPIESLMKNGFRVKLIKRQTQF-
>seq0033
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------RVRAAQLLSWFLYEITENN----EILSNINNEINEYI-NYDNIKLVYLENCFLETLRLRPSVPHLVRQANVDI-NIP---YTIRKDDTIIVPTYAMGRMDYIW-ENPLKFDPNRFKHSPSKYPAFNIKPRLCLGKHVALLEAKIAIAKLFQKYK-FEPIKSVMKNGFKVKVVPNIFK--
>seq0034
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SINAEYGNYDNIKLIYLENCFLETLRLRPSVPHLVRQANVDI-PIP---YTIRKDDTIIVPTYAMGRMDYIW-ENALTFDPNRFKYSPSKYPAFNIKPRLCLGKHVALLEAKIAIAKLFKKYK-FEPIKSVMKNGFKVKVVPIE----
>seq0035
PFIG--HNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKDYMFEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYGELKKHEEIINKKIQDIISKRKEQ---YDIISIFL-ISDKELRDICANFILAGRDTTGQLLSWFCYEICENK----HIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRVAKTDI-LIP---HVIRKGDTIIVPCYAMGRMPTIW-KEPLKFDPLRFNFPPCKYPAFNIPPRLCLGKHVAIMEAKIAIVKLFRKYE-LIPDTSMMKTGFRVRLKSR-----
>seq0036
PFIG--HNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKDYMFEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYGELKKHEEIINKKIQDIISKRKEQ---YDIISIFL-ISDKELRDICANFILAGRDTTGQLLSWFCYEICENK----HIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRVAKTDI-LIP---HVIRKGDTIIVPCYAMGRMPTIW-KEPLKFDPLRFNFPPCKYPAFNIPPRLCLGKHVAIMEAKIAIVKLFRKYE-LIPDTSMMKTGFRVRLKSR-----
>seq0037
--------------------------------------------------------------------------------------------------------------------------------------------KQVQ--YDLLSLFL-MSIKELRDISMNFIIAGRDTTAQTLSWFTYELC--P----HVYDQIMKEIDQVIGTYDLIKLKYLENALLETLRLHPAVPHLLRFATRDF-RLP---HIIRKGDGIVCAAYLMGHISHLW-DDPERFDPTRFEYDPSYFPAFNIAPRICLGKHVALLEAKIAAIKLFKKFK-IIPVPAPMKNGFKVTLHNIETD--
>seq0038
--------------------------------------------------------------------------------------------------------------------------------------------------YDLLSLFL-MSIKELRDISMNFIIAGRDTTAQTLSWFIYELS--P----HVQDQIMNEINHVIGDYHLIKLKYLENALLETLRLHPAVPHLLRFATRDF-RIP---HIIRKGDGIVCAAYIMGHVPELW-NNPHQFDPTRFEYDPSYFPAFNIAPRLCLGKHVALLEAKIAAVKLLKKFK-IIPVPAPMKNGFKVTLECRN----
>seq0039
----------------------------------------------------------------------------------------------------------------------------------------------IR--YDLLSLFL-ITEKELRDIAMNFIIAGRDTTAQTLSWFIYELT-SP----DVEENILKEIDS-IGTYENIKFKYLENALLETLRMHPAVPHLVRYATRDI-LLR---NIVRKGDGIVVGAYVMGHIPWLW-PDPERFDPTRFEYDPCYFPVFNVAPRLCLGKHVALLEAKIAAVKLLKKYR-IEAIKAPMRYGFKVKLHPRL----
>seq0040
PFIGHIKNFIFIVDPKIIDLLFD--KRPMFGDGIFSSDGNIWKKHRALASRMFTLRSLRDYMFKSFCSTTDEFINKLS-----VDIYDMYNRLTLEAFTYVAFGTNLGAIS-------------------------------------------------------------------------------------------------------------------------QAPEELEFTSFDK-ICK------------------------------------RF-FDP---------------------------IKM------------------------------
>seq0041
--------------------------------------------------------------------------------------------------------------------------------------------------YDLLSMFI-ITDQELRDITFSFIIAGKDTTAQMLSWFMYHIHN----LQHIFDGVRKEIKEVFGEYDKVKCSFIECCLKESLRLYPSVPHLVRTAVKDM-KLP---YTLRKGDELFVSTFAMGRMPWIW-KDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAG-------------
>seq0042
--------------------------------------------------------------------------------------------------------------------------------------------------YDLLSMFI-ITDQELRDITFSFIIAGKDTTAQMLSWFMYHIHN----LQHIFDGVRKEIKEVFGEYDKVKCSFIECCLKESLRLYPSVPHLVRTAVKDM-KLP---YTLRKGDELFVSTFAMGRMPWIW-KDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAGFQAHLQK------
>seq0043
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVKCSFIECCLKESLRLYPSVPHLVRTAVKDM-KLP---YTLRKGDELFVSTFAMGRMPWIW-KDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAGFQAHLQK------
>seq0044
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EYEKVKCRYIECCLKESLRLYPSVPHLVRTAVKDI-KLP---YTVRPGDEVFVSAYAMGRMPWVW-EDPLEFKPERFQPDPSMYPAFNIAPRICLGRHVALLEGKIAIIKLFTKYKSITAVQSPMGAGFQAHLQK------
>seq0045
--------------------------------------------------------------------------------------------------------------------------------------------------FDLISMFI-ITDEELRDITFSFIIAGKDTTAQMLSWLMYHLHK----LQQVMDNIRAEIRRVFGDYEKVQCQYIECCLKESLRLYPSVPYLVRTPVKDI-ATH---YVIRKGDEVMVAAYSMARMPWLW-DDPLAFKPERFMYDPSLYPAFNIAPRICLGRHVALMEGKIAVIKLFSKYKNITAVKSPMETGFKAHLNVR-----
>seq0046
---------------------------------------------------------------------------------------------------------------------------------------------------------------------INFIIAGKDTTAQMLSWFFYHINN----LYDIERKMRDEIEEIFGTYEKVKCDYIECCLNETLRLYPSVPHLVRTAVKDI-RTP---YVIRKGDEIFISAWSMGRAPWIW-DEPLQFKPERFMIDPSRFPAFNVAPRICLGKHVALLEGKLALIKIFKKYKHISAVPGPMKVGFKVRMRKE-----
>seq0047
PFVG--HHRIFITNPKIAKQLFDAIKRELLGDGIFATNGQRWREHRAIASHMFTVRSLRDYMFDVFCYTTDQLLDKLEMTVDDVNIYDMYNRLTFEAFTKIAFGVDVGEIRFDRAELRKKEMRSHIDWIEDYIYKVIANRRAYY--YDLLSMFL-ISDKELRDITVNFIIAGKDTTAQMLSWFTYHLHK----LIEVENKIRAEITKVFGNYKQVQCTYLECCFLESLRLYPSVPHLARAAVVDI-ETY---YTIRAGDEVLICPLSMSRLEWIW-PNAEQFIPERFAFDPWVYPAFNIPPRLCLGKHVALLEGKIALIKLFSRFSSIVRSDAPMPHGYKVHLRKRVEP--
>seq0048
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IKNIFGKYEDVKCNYIEACLYESLRLYPSVPNLVRTAIEDI-KLP---HTIRKGEEIVISTYSMGRSKYIW-EDPMKFNPERFIYEPWVYPAFNLKPRLCLGKHVAILEGKIAIIKLFSQFQSIQAFQSAMKNGLKVVLK-------
>seq0049
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------IAGRDTTSQMLSWFMFHLTKND-GMDLIEKNIRNEIKNIFGKYEDVKCNYIEACLYESLRLYPSVPNLVRTAIEDI-KLP---HTIRKGEEIVISTYSMGRSKYIW-EDPMKFNPERFIYEPWVYPAFNLKPRLCLGKHVAILEGKIAIIKLFSQFQSIQAFQSAMKNGLKVVLK-------
>seq0050
--------------------------------------------------------------------------------------------------------------------------------------------------YDLLSMFI-ISDRQLRDITMNFIIAGRDTTSQMLSWFMYHLTNSD--MKTIESNIRNEIKTIFGTYDDVKCNYIEACLLESLRLYPSVPNLVRTAIEDI-QTP---YTIRKNDEIMISTYSIGRSKYIW-KDPLTFNPERFLYDPSVYPAFNLKPRLCLGKHVALMEGKIAIIKLFNKFKTIKCVPSAMKNGWKVTLE-------
>seq0051
--------------------------------------------------------------------------------------------------------------------------------------------------YDLLSMFI-ISDDELRDITMNFIIAGRDTTSHMLSWFLFHLTQND-GMSDIEKKIRNEIDNIFGSYEKVKCEYIEACLYETLRLYPSVPHLLRTAVEDI-KTK---YTIRKGDDIVISAYAMGRSKYIW-DKPLKFDANRFIYDASVYPAFNIQPRLCLGKHVAILEGKIALIKLFSRFKTIKCLPSAMKNGWKLDLK-------
>seq0052
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLSWFYFHLTQND-GMSEIEKNIRNEIDNIFGSYENVKCEYIEACLYETLRLYPSVPHLLRTAVEDI-KTK---YTIRKGDDIVISAYAMGRSKYIW-DDPLKFDANRFIYDASVYPAFNIQPRLCLGKHVAILEGKIALIKLFTKFKNIKCLPSAMKNGWKLDLK-------
>seq0053
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VECKYIECCLKETLRLYPSVPHFSREMVKDF-KVKI--YTFYKGDEIIITTFPLGRLPWLW-ENADKFIPERFMYDNSQYPAFNIAPRTCLGKNVALLEGKIAVVAMFTNFKSFQAVPAAM----------------
>seq0054
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IVENIRKEIIQKFGDYDKVECKYIECCLKETLRLYPSVPHFSREMVKDF-KVKI--YTFYKGDEIIITTFPLGRLPWLW-GNADKFIPERFMYDNSQYPAFNIAPRTCLGKNVALLEGKIAVVAMFTNFKSFQAVPAAMDGGFKIHIH-------
>seq0055
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IVENIRKEIIEKFGEYNKVECKYIECCLKETLRLYPSVTHFSREMVKDF-KLKI--YTFYKGDEIVVTTFAMGRLPWLW-KNAEKFVPERFMYDQSKYVAFNISPRTCLGKNVALLEGKIAVIAMFSQFKSFRTVPAAMDGGFNIYVE-------
>seq0056
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------IAGRDTTSQMISWFMFHLLNQSNKRNIIIDNIKNEIISVFGEYDKVQCVYLDACLKETLRLYPSVPHFVRQMVTDL-TLNI--YTFEKGDEIVVFTIALGKLPWLW-ENADEFIPERFIYDAEIWPAFNIAPRTCLGKNVALMEGKMALIAMFSNFKNFKTVAAPFRNGFKIFLD-------
>seq0057
--------------------------------------------------------------------------------------------------------------------------------------------------YDLLSIFI-INDKFLRDVTMNFIIAGRDTTSQMLSWFIFHLLNEDEKRNVIINNIKKEIVDVFGEYDKVKCSYIEACLKETLRLYPSVPHFVREMVSDL-TLNI--YTFHKGDEVIVCTIALGKLPWLW-ENANEFIPERFIYDAHIWPAFNIAPRTCLGKNVALLEGKTAIIAMFSNFKKMTTVPAPFRNGFNIYLK-------
>seq0058
------------------------------------------------------------------------------------------------------------------------------------------------------------------DITMNFIIAGRDTTSQMLSWFMFHLYNEDDKRNVIINNIKNEIISIFGEYNKVKCDYIEACLKETLRMYPSVPHFVREMVTDM-KINI--YIFEKGNEIIICTIALGKLPWLW-DNANEFIPERFIYDNHIYPAFNILPRTCLGKNVALLEGKIAIISMFSNFNKFKAVP-------------------
>seq0059
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLSWFLYLVYENG--KKFIEEKILKEIEEKCPNFSELECEYLESALLETLRLYPSVHHLERTAVEDI-KLSLEQYIIREGDHIMVEAYALGRATWIWGDDALEFNPLRFYYDPSQYLAFNIAPRICLGKHVALLEAKLVVIKLLRHFT-IQPVKSAMKNGYKIILKRR-----
>seq0060
------QNVVFISDPVQTKYIYD--RRPMFGHGIFVSDGHEWRKQRKIASRLFTMRNLKHYMFENFETCSKRLVNKLP-----IDLFDMFNRLTMDGFVASAFGVYSDTIE-------------------------------------------------------------------------------------------------------------------------QAPHDTRFEAFDG-GCD------------------------------------RFIARP--------------------------FLETLKHAKRFCSIRERIESGE------------
>seq0061
-------------------------------------------------------------------------------------------------------------------------------------------ERIES--HDLLSLFM-FTEEELQDLCLNFIIAGRDTTAENISWLMYELSKNP----HVLQLVIDEINTL--TYDNVELTYLESALLETQRLHPSVPTLNRQAKRDI-KLP---FTVKKGDIYMVHNYAMGRAPWIW-EDPLRFDPTRFSYEPQVFPQFNIAPRMCLGKHVAMME--------------------------------------
>seq0062
--------------------------------------------------------------------------------------------------------------------------------------------------YNLLSLFLNYTLDELRDICINFIIAGRDTTAETLTWLCVELSSHP----DIVDQIRNEINQV--TYESLEMKYTESALLETQRLHPSVPSLIRFAFQDI-VLP---YTIRKGDAVNVFNYAMGRSPWIW-ENPLQFHPPRFQFHPSVYPAFNIGQRLCLGRHVALMHAKVVLYHLFKHFN-FKAVPAPLKNGFQVHLQPLHPTQN
>seq0063
---------------------------------------------------------------------------------------------------------------------------------------------------DLLTLYA-ITRSELQDVCVNFIIAGRDTTALNLCWLFILLAQNP----HCLQQLKDEIRSI--SFKTLDMTYTESCILEAQRIYPSVPSLTRVAVTDI-PLP---YVIHKDEIVVISTFAMNRSPKIW-ENPLQFDPSRFEHEPHIYPSFNIGQRLCLGRHVALLVAKVVLYHFFQNFD-FQIDMAPLTNGLPMRIIPLSSSV-

128
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.Without_low_SP_Col.With_Names Normal file
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>Sr_rh_Pfue_XX_Sr_rh_Pfue_Contig_17829_Len879_Cov11_OG5_126554
-------------------------------------------------------------------------------------------------------------ISFDASVFKWGELAAHMKVVDGFADEMIAKCR-----YDLLSKFI-ISTRELRDILLNFIIAGRDTTAQLLSWCSYELCRNP----EIQSKIYDELK----TYQTVKMKYLEAVLYESLRLHPSVPNMTRFATRDI-QLN---NTIRKGDAVLVSNYVLGRLQKWW-DNPYKFDPMRFYYKAHEYTNFNIPPRLCLGKHVAMMEAKIGLATILKDYR-MELKPGPMKNGCYINFIDRLSE--
>Sr_rh_PspA_XX_Sr_rh_PspA-LKH285_9262_Len672_Cov8_OG5_126554
--------------------------------------------------------------------------------------------------------------------------------------------------YDLLTKFI-ISTRELRDILLNFIIAGRDTTAQLLSWCSYELCLNP----EIQDKVYEELS----TYQSVKMKYLEAVLYEALRLHPSVPNMSRFATRDI-QLS---DVIRKGDCILVSNYVLGRLHQWW-ENALQFDPMRFYYKAHEYTNFNVPPRLCLGKHVALMEAKIALATVLKDYR-MELKPGPMKNGCFINFIDRSTK--
>Sr_rh_Al01_XX_Sr_rh_Al01-LKH192_6022_Len1275_Cov17_OG5_126554
-----------------IDLLFDADKSPVLGKGIFVADGNIWKKHRAIASRMFTVRSLRDYMFEVFMDTTDAFIDKCELYTQCVDIYDMYNRLTLEAFTMVAFGVPLGVISFDDGQTRVRTLKKHEQIINEFANTIIQKKRKHF--YDIMSLFL-VSDAELRDVALNFIVAGRDTTAQLLSWFSYAMSENK----GVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAKVDI-ELP---DVIRKGDAIIIPTFAMGRMPWIW-KDPLKFNPDRFNFTPSQYPAFNIPPRLCLGKHVALMEAKIAIIKLFKKYK-LEAVPSVMKYGFKVKLIPR-----
>Sr_rh_Hg01_XX_Sr_rh_Hg01-LKH304_11955_Len555_Cov4_OG5_126554
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLSWFSYAMSENK----GVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAKVDI-ELP---DVIRKGDAIIIPTFAMGRMPWIW-KDPLKFNPDRFNFTPSQYPAFNIPPRLCLGKHVALMEAKIAIIKLFKKYK-LEAVPSVMKYGFKVNLIPR-----
>Sr_rh_HgpA_XX_Sr_rh_HgpA-LKH314_3374_Len948_Cov16_OG5_126554
-------------------------------------------------------------------------------------------------------------ISFDDGQTRVRTLKKHVQIINEFANTIIQKKRKHF--YDIMSLFL-VSDAELRDVALNFIVAGRDTTAQLLSWFSYAMSENK----GVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAKVDI-ELP---DVIRKGDAIIIPTFAMGRMPWIW-KDPLKFNPDRFNFTPSQYPAFNIPPRLCLGKHVALMEAKIAIIKLFKKYK-LEAVPSVMKYGFKVKLIPR-----
>Sr_rh_Nn01_XX_Sr_rh_Nn01_Contig_13892_Len1674_Cov284_OG5_126554
PYFG--HNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTLKKHINIINEFANEFIQKKREHL--YDIMWLFL-ISDEELRDIALNFIIAGRDTTAQLLSWCTYLLSENQ----HVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDI-ALP---DIIRKGDGIVVPTFAMGRMPWIW-KDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYK-LEPVSSVMKNGFKVKLIPRES---
>Sr_rh_Nn02_XX_Sr_rh_Nn02_Contig_13025_Len1674_Cov94_OG5_126554
PYFG--HNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTLKKHINIINEFANEFIQKKREHL--YDIMWLFL-ISDEELRDIALNFIIAGRDTTAQLLSWCTYLLSENQ----HVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDI-ALP---DIIRKGDGIVVPTFAMGRMPWIW-KDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYK-LEPVSSVMKNGFKVKLIPRES---
>Sr_rh_Nn10_XX_Sr_rh_Nn10_Contig_21569_Len1563_Cov139_OG5_126554
PYFG--HNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTLKKHINIINEFANEFIQKKREHL--YDIMWLFL-ISDEELRDIALNFIIAGRDTTAQLLSWCTYLLSENQ----HVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDI-ALP---DIIRKGDGIVVPTFAMGRMPWIW-KDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYK-LEPVSSVMKNGFKVKLIPR-----
>Sr_rh_Emac_XX_Sr_rh_Emac_Contig_11467_Len1551_Cov70_OG5_126554
PYFG--HHFIFVVDPALIDLLFDADKRPILGRGIFTSDGLLWKKHRSIASRMFTVRSLRDYMFQVFRDTTDTFMSKCEICANHVDIYDMFHRLTLEAFTQVAFGVSLGVIAFDDAQTKARTLKAHVKVINEFAERIIRSKRKDY--YDIMSLFL-ISDQELRDMALNFIIAGRDTTAQLLSWFSYAMTENA----DVESKLLAELRQAVADYDAIDCTYLENALLESLRLRPSVPHLVRYAKVDI-DLP---ETIRKGNGIVIPTFAMGRMPWIW-KDPLKFDPDRFNYTASQYPAFNIPPRLCLGKHVALLEAKIAVVKLFTKYK-LVPMPSVMKNGFKVKLIPRE----
>Sr_rh_Al02_XX_Sr_rh_Al02-LKH279_3746_Len555_Cov10_OG5_126554
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LMSWFSYAMTENE----EVEKKIVEEIRLYVGDYNTINCQYLENAFLESLRMRPVLPHLVRYAKVDI-ALP---HVIRKGDGLIVPSFAMGRMPWIW-KDPNTFNPDRFKYTPAQYPAFNIPPRLCLGKHVALLEAKIMIIKLFKKYK-LEAVPNIMKNGLKVRLIPRGK---
>Sr_rh_As04_XX_Sr_rh_As04-LKH296_1295_Len732_Cov6_OG5_126554
--------------------------------------------------------------------------------------------------------------------------------------------------YDLMSLFL-ISDDELRDVALNFILAGRDTTAQLMSWFSYAMTENE----EVEKKIVEEIRLYVGDYNTINCQYLENAFLESLRMRPVLPHLVRYAKVDI-ALP---HVIRKGDGLIVPSFAMGRMPWIW-KDPNTFNPDRFKYTPAQYPAFNIPPRLCLGKHVALLEAKIMIIKLFKKYK-LEAVPNIMKNGLKVRLIPRGK---
>Sr_rh_As01_XX_Sr_rh_As01-LKH294_6033_Len771_Cov5_OG5_126554
--------------------------------------------------------------------------------------------------------------------------------------------------YDLMSLFL-VSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENE----EVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDI-TLP---DVVRKGDGIIIPTYAMGRMPWIW-KDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYK-LEALPSVMKNGFKVRLVPRCK---
>Sr_rh_As05_XX_Sr_rh_As05-LKH295_5839_Len819_Cov11_OG5_126554
-----------------------------------------------------------------------------------------------------------------------RS----------------SSKKQHF--YDLMSLFL-VSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENE----EVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDI-TLP---DVVRKGDGIIIPTYAMGRMPWIW-KDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYK-LDALPSVMKNGFKVRLVPRCK---
>Sr_rh_As03_XX_Sr_rh_As03-LKH313_6888_Len702_Cov8_OG5_126554
--------------------------------------------------------------------------------------------------------------------------------------------------YDLMSLFL-VSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENE----EVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDI-TLP---DVVRKGDGIIIPTYAMGRMPWIW-KDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYK-LEALPSVMKNGFKVRLVPRCK---
>Sr_rh_As02_XX_Sr_rh_As02-LKH324_15814_Len489_Cov16_OG5_126554
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNQFIGNYDMLNCQYLESSFYESLRLQPSLPHLVRYAKVDI-PLP---DVIRKGDGVIVPMYAMGRMPWLW-KNPDKFDPERFNYTPAEYPAFNIPPRVCLGKHVALMEAKIAVIKLLKKFK-LEALPTVMKNGFKVKLIPRCK---
>Sr_rh_Ts02_XX_Sr_rh_Ts02-LKH320_6145_Len708_Cov5_OG5_126554
--------------------------------------------------------------------------------------------------------------------------------------------------YDLMSLFL-ITDDELRDIALNFIIAGRDTTAQLLSWFSYCITDNK----QIEENIMNEINQYIGDYNVIQCEYLESSFLETLRLRPSVPHLVRYAKIDI-KLP---DIIRKGDGIVIPTYAMGRMPWIW-NDPLKFNPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYK-LQPLPSIMRNGFKVKLIPRDSK--
>Sr_rh_Calb_XX_Contig_7745_Len1683_Cov38_OG5_126554
PLIG--HNFIFMVSPKLIDLLFDSNKLPILGHGIFNADGQLWKKHRSIASRMFTVRSLRDYMFNVFVDTTDKWILKSEILKNFVDIYNMNLRLTMEAFTKVAFGVDLGTIAMDDGITKLKSLKKHSHILNDFAKKVIDDRKS----YDLLSLFL-VNVSELRDVCINFIVAGRDTTAQLLSWFMYELS-NP----KIEEKIMEEINEYIGEYKQIECEYLENCLLETLRLRPSVPHLVRYAKCDI-ELPG--HIIRKGDGIVIPTYAMGRMPWIW-KDPLKFNPDRFKHPPSKYPAFNIPPRLCLGKHVALLEAKIAIVKLFKKYK-LVKLPSVMKYGYKVKLEPRNQ---
>Sr_rh_RspA_XX_Sr_rh_RspA-LKH290_4671_Len1062_Cov25_OG5_126554
-----------------------------------------------------------------FNDTTDDFIAKCEICEMSVNIYDMFHRLTLEAFTMVAFGVPLGVISFDEGRTKWRTLKKHLKIINEFASNIIHKKRQQF--YDLISLFM-ITDEELRDIALNFIIAGRDTTAQLLSWFSYLVTENE----SVESKIMNEINECVADYNMVKCEYLENAFLETLRLRPSVPHLVRYAKTDI-KLP---HIIRKGDGIVIPTFAMGRMPWIW-SNPLEFNPDRFKFTPAEYPAFNLPPRLCLGKHVALLEAKIAIIKLFKKYK-LEAVPSVMKYGFNVKLVPRKQET-
>Sr_rh_FF02_XX_Sr_rh_FF02_Contig_1649_Len957_Cov10_OG5_126554
---------------------------------------------------------------------------------------NMYNRLTLEAFTQVAFGVPLGCISFDRGQSKLRELRKHLKVVNEFVSKVIVERK-----FDLLSLFL-TSDKELRDVAMNFIVAGRDTTAQLLSWFSYLISENQ----ECEAKVTKEIMEHVPTYEMVKCQYLENALLETLRLRPSVPHLVRFAKVDI-LLP---HVIRKGDGIVVPTYAMGRMPSLW-KDPLKFDPSRFEYTPSEYPAFNIPPRLCLGKHVALLESKIAIIRLFRKFK-LEPLSSIMKNGFRVKLVPR-----
>Sr_rh_Hind_XX_Contig_12080_Len1260_Cov53_OG5_126554
--------------------------KPVFGVGILSTDGKLWKKYRSIGSRIFTVRSLRDFMYEVFDSTSSALVKKSLIQEQFVDLYNMFNRLTLEAFTHIAFGVSMKTIAFDRSQWDFKELKKHAGILNDKIGLLVRQRKEQY--KDLLTLYF-ATDLELRDLIMNFVVAGRDTTAQLCSWFSYEISEHA----HVDARILEEIHTYVGTYQMVKLKYMESCFLETLRLHPSVPHLVRFALVDI-KLP---HVIRKGDGVVVPVYAMGRMPWLW-PKPLVFDPMRFEYTPALFPAFNIPPRLCLGKHLALLEAKVVMVKILRKYR-IVARESIMKDGFYARLQPRAQQQQ
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_20076_Len1179_Cov40_OG5_126554
---------------------------------------------------MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19982_Len1182_Cov79_OG5_126554
---------------------------------------------------MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_20382_Len1167_Cov94_OG5_126554
---------------------------------------------------MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19888_Len1155_Cov80_OG5_126554
-------------------------------------------------------------MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19044_Len1188_Cov38_OG5_126554
-------------------------------------------------------------MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>Sr_rh_Pina_XX_Contig_8772_Len858_Cov33_OG5_126554
PFFG--HNFIFLCDPKLIDLIFDAEKKPMLGHGIFLSDGARWKKQRSIASRMFTVRSLRDYMFEVFVDTSNTFIDKCLIQSEEIDIYDMFNRLTLEAFTEVAFGVSLNIMSFDRGQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>Sr_rh_Slin_XX_Contig_3275_Len1587_Cov14_OG5_126554
PFFG--HNFIFLCDPKLIDFVFDANKKPLLGHGIFVSDGAKWKKHRSIASHMFTVRSLREYMFEVFVDTSNTFLDKCLIQSKEIDIYNMFNRLTLEAFTKVAFGVSLNIISFDRGQTAWRELHIHTAIIEQQISEVIQRNVN----YDLLSLFL-ASENELRDVAMNFIIAGRDTTAQLLSWFSYLLT-NP----KVEQMIVDEINANIGDYEMVKCQYLENAFLETLRLHPSVPHLVRYAKTDI-PLL---NIIRKGDCIIIPTYAMGRMPWLW-NNALTFDPSRFEYSPAQYPAFNIPPRLCLGKHVALLEAKIVIIKLLRKYR-IVAIPSVMKNGFKVRLELR-----
>Sr_rh_FF02_XX_Sr_rh_FF02_Contig_3920_Len636_Cov5_OG5_126554
-------------------------------------------------------------------------------------------------------------------------------------------------------------------ITMNFIIAGKDTTAQLLSWFFYVITHNR--SDEVISNILNEFDAQSNGYEKMKLQYLEYCLLETLRLFPSVPHLIRFAKSDIFRVD---YTIRKGDGIVIPLYAMGRMPWIW-ENPDEFDPLRFQFLPSEYPAFNIPPRLCLGKHVALMEAKIAVIKLLKKYR-FVTQESPMKNGYKVKLIPK-----
>Sr_rh_PspA_XX_Sr_rh_PspA-LKH285_926_Len1191_Cov12_OG5_126554
--------------------------LPILGRGIIASDGKIWKRHRKVASRMFTLSSLRDYMFEVFNSTTDTLMDKMLIHKDHVDLYDMYNRLTLEAFTEVAFGVKLGVISFDRGASKFKELLFHEKTINNMVWDLVHKCKERL--CDLLSLFI-ITDVELRDITINFVIAGRDTTAQLLSWFSYLIT-WP----QVEKKVLKEIKEVFPDYGKIKLEYLENAFLETLRMHPSVPHLVREAKVDI-HLP---HIIRKGDGVIVPTYAMGRLPWLW-EKPEEMNPDRFQFTPSEYPAFNIPPRLCLGKHVSLMEAKIQIVKLLPKYK-FEPLPSAMKNGFKVKLVPRDTQ--
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_3536_Len591_Cov9_OG5_126554
----------------------------------------------------------------------------------------------------------------------------------------------------------------LRDVAMNFIIAGRDTTAQLLSWFMYLFT-NK----EIEKPILNEINSII-NYIDVKLKYLENCFFETLRLRPAVPHLLRFAKTDI-QLK---YVIRKGDGICIPTFAMNRMPWIW-DNPFKFDPNRFDQSPSKYVAFNIPPRLCLGKHVALLEAKLLVLELLTRFK-IEPVLSAMRNGFKVYFHPR-----
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_14775_Len321_Cov15_OG5_126554
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YVIRKGDGICIPTFAMNRMPWIW-DNPFKFDPNRFDQSPSKYVAFNIPPRLCLGKHVALLEAKLLVLELLTRFK-IEPVLSAMRNGFKVYFHPR-----
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_8241_Len441_Cov6_OG5_126554
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IKLNYLENSFLETLRLRPSVPHLVRKAVVDI-KIP---HIIRKDDTILVPTYAMGRMEWIW-KDALKFDPTRFEYSPSKYPAFNIKPRLCLGKHVALLEAKIAIVKLFKKYK-FIPIESLMKNGFRVKLIKRQT---
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_5955_Len525_Cov17_OG5_126554
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NQ----HVEDKIMDEINQHI-NYNTIKLNYLENSFLETLRLRPSVPHLVRKAVVDI-KIP---HIIRKDDTILVPTYAMGRMEWIW-KDALKFDPTRFEYSPSKYPAFNIKPRLCLGKHVALLEAKIAIVKLFKKYK-FIPIESLMKNGFRVKLIKRQTQF-
>Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_6707_Len579_Cov20_OG5_126554
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------RVRAAQLLSWFLYEITENN----EILSNINNEINEYI-NYDNIKLVYLENCFLETLRLRPSVPHLVRQANVDI-NIP---YTIRKDDTIIVPTYAMGRMDYIW-ENPLKFDPNRFKHSPSKYPAFNIKPRLCLGKHVALLEAKIAIAKLFQKYK-FEPIKSVMKNGFKVKVVPNIFK--
>Sr_rh_Tr01_XX_Sr_rh_Tr01_Contig_9807_Len483_Cov16_OG5_126554
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SINAEYGNYDNIKLIYLENCFLETLRLRPSVPHLVRQANVDI-PIP---YTIRKDDTIIVPTYAMGRMDYIW-ENALTFDPNRFKYSPSKYPAFNIKPRLCLGKHVALLEAKIAIAKLFKKYK-FEPIKSVMKNGFKVKVVPIE----
>Sr_rh_Bv04_XX_Sr_rh_Bv04_Contig_12687_Len1599_Cov64_OG5_126554
PFIG--HNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKDYMFEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYGELKKHEEIINKKIQDIISKRKEQ---YDIISIFL-ISDKELRDICANFILAGRDTTGQLLSWFCYEICENK----HIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRVAKTDI-LIP---HVIRKGDTIIVPCYAMGRMPTIW-KEPLKFDPLRFNFPPCKYPAFNIPPRLCLGKHVAIMEAKIAIVKLFRKYE-LIPDTSMMKTGFRVRLKSR-----
>Sr_rh_Bv05_XX_Sr_rh_Bv05_Contig_10933_Len1599_Cov61_OG5_126554
PFIG--HNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKDYMFEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYGELKKHEEIINKKIQDIISKRKEQ---YDIISIFL-ISDKELRDICANFILAGRDTTGQLLSWFCYEICENK----HIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRVAKTDI-LIP---HVIRKGDTIIVPCYAMGRMPTIW-KEPLKFDPLRFNFPPCKYPAFNIPPRLCLGKHVAIMEAKIAIVKLFRKYE-LIPDTSMMKTGFRVRLKSR-----
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_10605_Len690_Cov15_OG5_126554
--------------------------------------------------------------------------------------------------------------------------------------------KQVQ--YDLLSLFL-MSIKELRDISMNFIIAGRDTTAQTLSWFTYELC--P----HVYDQIMKEIDQVIGTYDLIKLKYLENALLETLRLHPAVPHLLRFATRDF-RLP---HIIRKGDGIVCAAYLMGHISHLW-DDPERFDPTRFEYDPSYFPAFNIAPRICLGKHVALLEAKIAAIKLFKKFK-IIPVPAPMKNGFKVTLHNIETD--
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_18259_Len648_Cov21_OG5_126554
--------------------------------------------------------------------------------------------------------------------------------------------------YDLLSLFL-MSIKELRDISMNFIIAGRDTTAQTLSWFIYELS--P----HVQDQIMNEINHVIGDYHLIKLKYLENALLETLRLHPAVPHLLRFATRDF-RIP---HIIRKGDGIVCAAYIMGHVPELW-NNPHQFDPTRFEYDPSYFPAFNIAPRLCLGKHVALLEAKIAAVKLLKKFK-IIPVPAPMKNGFKVTLECRN----
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_13702_Len678_Cov20_OG5_126554
----------------------------------------------------------------------------------------------------------------------------------------------IR--YDLLSLFL-ITEKELRDIAMNFIIAGRDTTAQTLSWFIYELT-SP----DVEENILKEIDS-IGTYENIKFKYLENALLETLRMHPAVPHLVRYATRDI-LLR---NIVRKGDGIVVGAYVMGHIPWLW-PDPERFDPTRFEYDPCYFPVFNVAPRLCLGKHVALLEAKIAAVKLLKKYR-IEAIKAPMRYGFKVKLHPRL----
>Sr_rh_Ssp1_XX_Contig_1307_Len810_Cov61_OG5_126554
PFIGHIKNFIFIVDPKIIDLLFD--KRPMFGDGIFSSDGNIWKKHRALASRMFTLRSLRDYMFKSFCSTTDEFINKLS-----VDIYDMYNRLTLEAFTYVAFGTNLGAIS-------------------------------------------------------------------------------------------------------------------------QAPEELEFTSFDK-ICK------------------------------------RF-FDP---------------------------IKM------------------------------
>Sr_rh_As01_XX_Sr_rh_As01-LKH294_2597_Len693_Cov4_OG5_126554
--------------------------------------------------------------------------------------------------------------------------------------------------YDLLSMFI-ITDQELRDITFSFIIAGKDTTAQMLSWFMYHIHN----LQHIFDGVRKEIKEVFGEYDKVKCSFIECCLKESLRLYPSVPHLVRTAVKDM-KLP---YTLRKGDELFVSTFAMGRMPWIW-KDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAG-------------
>Sr_rh_As03_XX_Sr_rh_As03-LKH313_10378_Len717_Cov12_OG5_126554
--------------------------------------------------------------------------------------------------------------------------------------------------YDLLSMFI-ITDQELRDITFSFIIAGKDTTAQMLSWFMYHIHN----LQHIFDGVRKEIKEVFGEYDKVKCSFIECCLKESLRLYPSVPHLVRTAVKDM-KLP---YTLRKGDELFVSTFAMGRMPWIW-KDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAGFQAHLQK------
>Sr_rh_As05_XX_Sr_rh_As05-LKH295_19507_Len444_Cov9_OG5_126554
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KVKCSFIECCLKESLRLYPSVPHLVRTAVKDM-KLP---YTLRKGDELFVSTFAMGRMPWIW-KDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAGFQAHLQK------
>Sr_rh_As02_XX_Sr_rh_As02-LKH324_14147_Len456_Cov8_OG5_126554
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EYEKVKCRYIECCLKESLRLYPSVPHLVRTAVKDI-KLP---YTVRPGDEVFVSAYAMGRMPWVW-EDPLEFKPERFQPDPSMYPAFNIAPRICLGRHVALLEGKIAIIKLFTKYKSITAVQSPMGAGFQAHLQK------
>Sr_rh_Emar_XX_Contig_8285_Len723_Cov12_OG5_126554
--------------------------------------------------------------------------------------------------------------------------------------------------FDLISMFI-ITDEELRDITFSFIIAGKDTTAQMLSWLMYHLHK----LQQVMDNIRAEIRRVFGDYEKVQCQYIECCLKESLRLYPSVPYLVRTPVKDI-ATH---YVIRKGDEVMVAAYSMARMPWLW-DDPLAFKPERFMYDPSLYPAFNIAPRICLGRHVALMEGKIAVIKLFSKYKNITAVKSPMETGFKAHLNVR-----
>Sr_rh_Hg01_XX_Sr_rh_Hg01-LKH304_7769_Len600_Cov7_OG5_126554
---------------------------------------------------------------------------------------------------------------------------------------------------------------------INFIIAGKDTTAQMLSWFFYHINN----LYDIERKMRDEIEEIFGTYEKVKCDYIECCLNETLRLYPSVPHLVRTAVKDI-RTP---YVIRKGDEIFISAWSMGRAPWIW-DEPLQFKPERFMIDPSRFPAFNVAPRICLGKHVALLEGKLALIKIFKKYKHISAVPGPMKVGFKVRMRKE-----
>Sr_rh_Hind_XX_Contig_2010_Len1647_Cov26_OG5_126554
PFVG--HHRIFITNPKIAKQLFDAIKRELLGDGIFATNGQRWREHRAIASHMFTVRSLRDYMFDVFCYTTDQLLDKLEMTVDDVNIYDMYNRLTFEAFTKIAFGVDVGEIRFDRAELRKKEMRSHIDWIEDYIYKVIANRRAYY--YDLLSMFL-ISDKELRDITVNFIIAGKDTTAQMLSWFTYHLHK----LIEVENKIRAEITKVFGNYKQVQCTYLECCFLESLRLYPSVPHLARAAVVDI-ETY---YTIRAGDEVLICPLSMSRLEWIW-PNAEQFIPERFAFDPWVYPAFNIPPRLCLGKHVALLEGKIALIKLFSRFSSIVRSDAPMPHGYKVHLRKRVEP--
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_6436_Len489_Cov15_OG5_126554
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IKNIFGKYEDVKCNYIEACLYESLRLYPSVPNLVRTAIEDI-KLP---HTIRKGEEIVISTYSMGRSKYIW-EDPMKFNPERFIYEPWVYPAFNLKPRLCLGKHVAILEGKIAIIKLFSQFQSIQAFQSAMKNGLKVVLK-------
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_6395_Len597_Cov13_OG5_126554
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------IAGRDTTSQMLSWFMFHLTKND-GMDLIEKNIRNEIKNIFGKYEDVKCNYIEACLYESLRLYPSVPNLVRTAIEDI-KLP---HTIRKGEEIVISTYSMGRSKYIW-EDPMKFNPERFIYEPWVYPAFNLKPRLCLGKHVAILEGKIAIIKLFSQFQSIQAFQSAMKNGLKVVLK-------
>Sr_rh_Sspa_XX_Contig_5747_Len702_Cov21_OG5_126554
--------------------------------------------------------------------------------------------------------------------------------------------------YDLLSMFI-ISDRQLRDITMNFIIAGRDTTSQMLSWFMYHLTNSD--MKTIESNIRNEIKTIFGTYDDVKCNYIEACLLESLRLYPSVPNLVRTAIEDI-QTP---YTIRKNDEIMISTYSIGRSKYIW-KDPLTFNPERFLYDPSVYPAFNLKPRLCLGKHVALMEGKIAIIKLFNKFKTIKCVPSAMKNGWKVTLE-------
>Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_256_Len708_Cov14_OG5_126554
--------------------------------------------------------------------------------------------------------------------------------------------------YDLLSMFI-ISDDELRDITMNFIIAGRDTTSHMLSWFLFHLTQND-GMSDIEKKIRNEIDNIFGSYEKVKCEYIEACLYETLRLYPSVPHLLRTAVEDI-KTK---YTIRKGDDIVISAYAMGRSKYIW-DKPLKFDANRFIYDASVYPAFNIQPRLCLGKHVAILEGKIALIKLFSRFKTIKCLPSAMKNGWKLDLK-------
>Sr_rh_QjpA_XX_Sr_rh_QjpA-LKH288_9889_Len564_Cov19_OG5_126554
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLSWFYFHLTQND-GMSEIEKNIRNEIDNIFGSYENVKCEYIEACLYETLRLYPSVPHLLRTAVEDI-KTK---YTIRKGDDIVISAYAMGRSKYIW-DDPLKFDANRFIYDASVYPAFNIQPRLCLGKHVAILEGKIALIKLFTKFKNIKCLPSAMKNGWKLDLK-------
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_13181_Len408_Cov3_OG5_126554
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VECKYIECCLKETLRLYPSVPHFSREMVKDF-KVKI--YTFYKGDEIIITTFPLGRLPWLW-ENADKFIPERFMYDNSQYPAFNIAPRTCLGKNVALLEGKIAVVAMFTNFKSFQAVPAAM----------------
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_6167_Len516_Cov7_OG5_126554
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IVENIRKEIIQKFGDYDKVECKYIECCLKETLRLYPSVPHFSREMVKDF-KVKI--YTFYKGDEIIITTFPLGRLPWLW-GNADKFIPERFMYDNSQYPAFNIAPRTCLGKNVALLEGKIAVVAMFTNFKSFQAVPAAMDGGFKIHIH-------
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_190_Len516_Cov4_OG5_126554
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IVENIRKEIIEKFGEYNKVECKYIECCLKETLRLYPSVTHFSREMVKDF-KLKI--YTFYKGDEIVVTTFAMGRLPWLW-KNAEKFVPERFMYDQSKYVAFNISPRTCLGKNVALLEGKIAVIAMFSQFKSFRTVPAAMDGGFNIYVE-------
>Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_6601_Len603_Cov10_OG5_126554
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------IAGRDTTSQMISWFMFHLLNQSNKRNIIIDNIKNEIISVFGEYDKVQCVYLDACLKETLRLYPSVPHFVRQMVTDL-TLNI--YTFEKGDEIVVFTIALGKLPWLW-ENADEFIPERFIYDAEIWPAFNIAPRTCLGKNVALMEGKMALIAMFSNFKNFKTVAAPFRNGFKIFLD-------
>Sr_rh_Tr01_XX_Sr_rh_Tr01_Contig_5346_Len690_Cov14_OG5_126554
--------------------------------------------------------------------------------------------------------------------------------------------------YDLLSIFI-INDKFLRDVTMNFIIAGRDTTSQMLSWFIFHLLNEDEKRNVIINNIKKEIVDVFGEYDKVKCSYIEACLKETLRLYPSVPHFVREMVSDL-TLNI--YTFHKGDEVIVCTIALGKLPWLW-ENANEFIPERFIYDAHIWPAFNIAPRTCLGKNVALLEGKTAIIAMFSNFKKMTTVPAPFRNGFNIYLK-------
>Sr_rh_Tr02_XX_Sr_rh_Tr02_Contig_17503_Len567_Cov70_OG5_126554
------------------------------------------------------------------------------------------------------------------------------------------------------------------DITMNFIIAGRDTTSQMLSWFMFHLYNEDDKRNVIINNIKNEIISIFGEYNKVKCDYIEACLKETLRMYPSVPHFVREMVTDM-KINI--YIFEKGNEIIICTIALGKLPWLW-DNANEFIPERFIYDNHIYPAFNILPRTCLGKNVALLEGKIAIISMFSNFNKFKAVP-------------------
>Sr_rh_FF02_XX_Sr_rh_FF02_Contig_5686_Len600_Cov5_OG5_126554
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLSWFLYLVYENG--KKFIEEKILKEIEEKCPNFSELECEYLESALLETLRLYPSVHHLERTAVEDI-KLSLEQYIIREGDHIMVEAYALGRATWIWGDDALEFNPLRFYYDPSQYLAFNIAPRICLGKHVALLEAKLVVIKLLRHFT-IQPVKSAMKNGYKIILKRR-----
>Sr_rh_Hhir_XX_Contig_20411_Len594_Cov57_OG5_126554
------QNVVFISDPVQTKYIYD--RRPMFGHGIFVSDGHEWRKQRKIASRLFTMRNLKHYMFENFETCSKRLVNKLP-----IDLFDMFNRLTMDGFVASAFGVYSDTIE-------------------------------------------------------------------------------------------------------------------------QAPHDTRFEAFDG-GCD------------------------------------RFIARP--------------------------FLETLKHAKRFCSIRERIESGE------------
>Sr_rh_Pfue_XX_Sr_rh_Pfue_Contig_20190_Len552_Cov3_OG5_126554
-------------------------------------------------------------------------------------------------------------------------------------------ERIES--HDLLSLFM-FTEEELQDLCLNFIIAGRDTTAENISWLMYELSKNP----HVLQLVIDEINTL--TYDNVELTYLESALLETQRLHPSVPTLNRQAKRDI-KLP---FTVKKGDIYMVHNYAMGRAPWIW-EDPLRFDPTRFSYEPQVFPQFNIAPRMCLGKHVAMME--------------------------------------
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_13699_Len690_Cov51_OG5_126554
--------------------------------------------------------------------------------------------------------------------------------------------------YNLLSLFLNYTLDELRDICINFIIAGRDTTAETLTWLCVELSSHP----DIVDQIRNEINQV--TYESLEMKYTESALLETQRLHPSVPSLIRFAFQDI-VLP---YTIRKGDAVNVFNYAMGRSPWIW-ENPLQFHPPRFQFHPSVYPAFNIGQRLCLGRHVALMHAKVVLYHLFKHFN-FKAVPAPLKNGFQVHLQPLHPTQN
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_18519_Len663_Cov18_OG5_126554
---------------------------------------------------------------------------------------------------------------------------------------------------DLLTLYA-ITRSELQDVCVNFIIAGRDTTALNLCWLFILLAQNP----HCLQQLKDEIRSI--SFKTLDMTYTESCILEAQRIYPSVPSLTRVAVTDI-PLP---YVIHKDEIVVISTFAMNRSPKIW-ENPLQFDPSRFEHEPHIYPSFNIGQRLCLGRHVALLVAKVVLYHFFQNFD-FQIDMAPLTNGLPMRIIPLSSSV-

448
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.aln Normal file
View File

@ -0,0 +1,448 @@
>seq0000
------------------------------------------------------------
-------------------------------------------------ISFDASVFKWG
ELAAHMKVVDGFADEMIAKCR-----YDLLSKFI-ISTRELRDILLNFIIAGRDTTAQLL
SWCSYELCRNP----EIQSKIYDELK----TYQTVKMKYLEAVLYESLRLHPSVPNMTRF
ATRDI-QLN---NTIRKGDAVLVSNYVLGRLQKWW-DNPYKFDPMRFYYKAHEYTNFNIP
PRLCLGKHVAMMEAKIGLATILKDYR-MELKPGPMKNGCYINFIDRLSE--
>seq0001
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLLTKFI-ISTRELRDILLNFIIAGRDTTAQLL
SWCSYELCLNP----EIQDKVYEELS----TYQSVKMKYLEAVLYEALRLHPSVPNMSRF
ATRDI-QLS---DVIRKGDCILVSNYVLGRLHQWW-ENALQFDPMRFYYKAHEYTNFNVP
PRLCLGKHVALMEAKIALATVLKDYR-MELKPGPMKNGCFINFIDRSTK--
>seq0002
-----------------IDLLFDADKSPVLGKGIFVADGNIWKKHRAIASRMFTVRSLRD
YMFEVFMDTTDAFIDKCELYTQCVDIYDMYNRLTLEAFTMVAFGVPLGVISFDDGQTRVR
TLKKHEQIINEFANTIIQKKRKHF--YDIMSLFL-VSDAELRDVALNFIVAGRDTTAQLL
SWFSYAMSENK----GVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRY
AKVDI-ELP---DVIRKGDAIIIPTFAMGRMPWIW-KDPLKFNPDRFNFTPSQYPAFNIP
PRLCLGKHVALMEAKIAIIKLFKKYK-LEAVPSVMKYGFKVKLIPR-----
>seq0003
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------------------LL
SWFSYAMSENK----GVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRY
AKVDI-ELP---DVIRKGDAIIIPTFAMGRMPWIW-KDPLKFNPDRFNFTPSQYPAFNIP
PRLCLGKHVALMEAKIAIIKLFKKYK-LEAVPSVMKYGFKVNLIPR-----
>seq0004
------------------------------------------------------------
-------------------------------------------------ISFDDGQTRVR
TLKKHVQIINEFANTIIQKKRKHF--YDIMSLFL-VSDAELRDVALNFIVAGRDTTAQLL
SWFSYAMSENK----GVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRY
AKVDI-ELP---DVIRKGDAIIIPTFAMGRMPWIW-KDPLKFNPDRFNFTPSQYPAFNIP
PRLCLGKHVALMEAKIAIIKLFKKYK-LEAVPSVMKYGFKVKLIPR-----
>seq0005
PYFG--HNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRD
YMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKAR
TLKKHINIINEFANEFIQKKREHL--YDIMWLFL-ISDEELRDIALNFIIAGRDTTAQLL
SWCTYLLSENQ----HVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRY
AKVDI-ALP---DIIRKGDGIVVPTFAMGRMPWIW-KDPLKFNPDRFNYTPSQYPAFNIP
PRLCLGKHVALLEAKIAIIKLFKKYK-LEPVSSVMKNGFKVKLIPRES---
>seq0006
PYFG--HNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRD
YMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKAR
TLKKHINIINEFANEFIQKKREHL--YDIMWLFL-ISDEELRDIALNFIIAGRDTTAQLL
SWCTYLLSENQ----HVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRY
AKVDI-ALP---DIIRKGDGIVVPTFAMGRMPWIW-KDPLKFNPDRFNYTPSQYPAFNIP
PRLCLGKHVALLEAKIAIIKLFKKYK-LEPVSSVMKNGFKVKLIPRES---
>seq0007
PYFG--HNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRD
YMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKAR
TLKKHINIINEFANEFIQKKREHL--YDIMWLFL-ISDEELRDIALNFIIAGRDTTAQLL
SWCTYLLSENQ----HVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRY
AKVDI-ALP---DIIRKGDGIVVPTFAMGRMPWIW-KDPLKFNPDRFNYTPSQYPAFNIP
PRLCLGKHVALLEAKIAIIKLFKKYK-LEPVSSVMKNGFKVKLIPR-----
>seq0008
PYFG--HHFIFVVDPALIDLLFDADKRPILGRGIFTSDGLLWKKHRSIASRMFTVRSLRD
YMFQVFRDTTDTFMSKCEICANHVDIYDMFHRLTLEAFTQVAFGVSLGVIAFDDAQTKAR
TLKAHVKVINEFAERIIRSKRKDY--YDIMSLFL-ISDQELRDMALNFIIAGRDTTAQLL
SWFSYAMTENA----DVESKLLAELRQAVADYDAIDCTYLENALLESLRLRPSVPHLVRY
AKVDI-DLP---ETIRKGNGIVIPTFAMGRMPWIW-KDPLKFDPDRFNYTASQYPAFNIP
PRLCLGKHVALLEAKIAVVKLFTKYK-LVPMPSVMKNGFKVKLIPRE----
>seq0009
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------------------LM
SWFSYAMTENE----EVEKKIVEEIRLYVGDYNTINCQYLENAFLESLRMRPVLPHLVRY
AKVDI-ALP---HVIRKGDGLIVPSFAMGRMPWIW-KDPNTFNPDRFKYTPAQYPAFNIP
PRLCLGKHVALLEAKIMIIKLFKKYK-LEAVPNIMKNGLKVRLIPRGK---
>seq0010
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLMSLFL-ISDDELRDVALNFILAGRDTTAQLM
SWFSYAMTENE----EVEKKIVEEIRLYVGDYNTINCQYLENAFLESLRMRPVLPHLVRY
AKVDI-ALP---HVIRKGDGLIVPSFAMGRMPWIW-KDPNTFNPDRFKYTPAQYPAFNIP
PRLCLGKHVALLEAKIMIIKLFKKYK-LEAVPNIMKNGLKVRLIPRGK---
>seq0011
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLMSLFL-VSDDELRDVALNFIIAGRDTTAQLL
SWFSYAITENE----EVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRY
AKVDI-TLP---DVVRKGDGIIIPTYAMGRMPWIW-KDPLKFDPDRFNYSPSQYPAFNIP
PRLCLGKHVALLEAKIAIIKLFKKYK-LEALPSVMKNGFKVRLVPRCK---
>seq0012
------------------------------------------------------------
-----------------------------------------------------------R
S----------------SSKKQHF--YDLMSLFL-VSDDELRDVALNFIIAGRDTTAQLL
SWFSYAITENE----EVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRY
AKVDI-TLP---DVVRKGDGIIIPTYAMGRMPWIW-KDPLKFDPDRFNYSPSQYPAFNIP
PRLCLGKHVALLEAKIAIIKLFKKYK-LDALPSVMKNGFKVRLVPRCK---
>seq0013
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLMSLFL-VSDDELRDVALNFIIAGRDTTAQLL
SWFSYAITENE----EVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRY
AKVDI-TLP---DVVRKGDGIIIPTYAMGRMPWIW-KDPLKFDPDRFNYSPSQYPAFNIP
PRLCLGKHVALLEAKIAIIKLFKKYK-LEALPSVMKNGFKVRLVPRCK---
>seq0014
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------MNQFIGNYDMLNCQYLESSFYESLRLQPSLPHLVRY
AKVDI-PLP---DVIRKGDGVIVPMYAMGRMPWLW-KNPDKFDPERFNYTPAEYPAFNIP
PRVCLGKHVALMEAKIAVIKLLKKFK-LEALPTVMKNGFKVKLIPRCK---
>seq0015
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLMSLFL-ITDDELRDIALNFIIAGRDTTAQLL
SWFSYCITDNK----QIEENIMNEINQYIGDYNVIQCEYLESSFLETLRLRPSVPHLVRY
AKIDI-KLP---DIIRKGDGIVIPTYAMGRMPWIW-NDPLKFNPDRFNYSPSQYPAFNIP
PRLCLGKHVALLEAKIAIIKLFKKYK-LQPLPSIMRNGFKVKLIPRDSK--
>seq0016
PLIG--HNFIFMVSPKLIDLLFDSNKLPILGHGIFNADGQLWKKHRSIASRMFTVRSLRD
YMFNVFVDTTDKWILKSEILKNFVDIYNMNLRLTMEAFTKVAFGVDLGTIAMDDGITKLK
SLKKHSHILNDFAKKVIDDRKS----YDLLSLFL-VNVSELRDVCINFIVAGRDTTAQLL
SWFMYELS-NP----KIEEKIMEEINEYIGEYKQIECEYLENCLLETLRLRPSVPHLVRY
AKCDI-ELPG--HIIRKGDGIVIPTYAMGRMPWIW-KDPLKFNPDRFKHPPSKYPAFNIP
PRLCLGKHVALLEAKIAIVKLFKKYK-LVKLPSVMKYGYKVKLEPRNQ---
>seq0017
------------------------------------------------------------
-----FNDTTDDFIAKCEICEMSVNIYDMFHRLTLEAFTMVAFGVPLGVISFDEGRTKWR
TLKKHLKIINEFASNIIHKKRQQF--YDLISLFM-ITDEELRDIALNFIIAGRDTTAQLL
SWFSYLVTENE----SVESKIMNEINECVADYNMVKCEYLENAFLETLRLRPSVPHLVRY
AKTDI-KLP---HIIRKGDGIVIPTFAMGRMPWIW-SNPLEFNPDRFKFTPAEYPAFNLP
PRLCLGKHVALLEAKIAIIKLFKKYK-LEAVPSVMKYGFNVKLVPRKQET-
>seq0018
------------------------------------------------------------
---------------------------NMYNRLTLEAFTQVAFGVPLGCISFDRGQSKLR
ELRKHLKVVNEFVSKVIVERK-----FDLLSLFL-TSDKELRDVAMNFIVAGRDTTAQLL
SWFSYLISENQ----ECEAKVTKEIMEHVPTYEMVKCQYLENALLETLRLRPSVPHLVRF
AKVDI-LLP---HVIRKGDGIVVPTYAMGRMPSLW-KDPLKFDPSRFEYTPSEYPAFNIP
PRLCLGKHVALLESKIAIIRLFRKFK-LEPLSSIMKNGFRVKLVPR-----
>seq0019
--------------------------KPVFGVGILSTDGKLWKKYRSIGSRIFTVRSLRD
FMYEVFDSTSSALVKKSLIQEQFVDLYNMFNRLTLEAFTHIAFGVSMKTIAFDRSQWDFK
ELKKHAGILNDKIGLLVRQRKEQY--KDLLTLYF-ATDLELRDLIMNFVVAGRDTTAQLC
SWFSYEISEHA----HVDARILEEIHTYVGTYQMVKLKYMESCFLETLRLHPSVPHLVRF
ALVDI-KLP---HVIRKGDGVVVPVYAMGRMPWLW-PKPLVFDPMRFEYTPALFPAFNIP
PRLCLGKHLALLEAKVVMVKILRKYR-IVARESIMKDGFYARLQPRAQQQQ
>seq0020
---------------------------------------------------MFTVRALRD
YMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWR
ELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLL
SWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRY
AKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLP
PRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>seq0021
---------------------------------------------------MFTVRALRD
YMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWR
ELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLL
SWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRY
AKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLP
PRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>seq0022
---------------------------------------------------MFTVRALRD
YMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWR
ELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLL
SWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRY
AKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLP
PRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>seq0023
------------------------------------------------------------
-MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWR
ELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLL
SWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRY
AKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLP
PRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>seq0024
------------------------------------------------------------
-MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWR
ELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLL
SWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRY
AKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLP
PRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>seq0025
PFFG--HNFIFLCDPKLIDLIFDAEKKPMLGHGIFLSDGARWKKQRSIASRMFTVRSLRD
YMFEVFVDTSNTFIDKCLIQSEEIDIYDMFNRLTLEAFTEVAFGVSLNIMSFDRGQ----
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------
>seq0026
PFFG--HNFIFLCDPKLIDFVFDANKKPLLGHGIFVSDGAKWKKHRSIASHMFTVRSLRE
YMFEVFVDTSNTFLDKCLIQSKEIDIYNMFNRLTLEAFTKVAFGVSLNIISFDRGQTAWR
ELHIHTAIIEQQISEVIQRNVN----YDLLSLFL-ASENELRDVAMNFIIAGRDTTAQLL
SWFSYLLT-NP----KVEQMIVDEINANIGDYEMVKCQYLENAFLETLRLHPSVPHLVRY
AKTDI-PLL---NIIRKGDCIIIPTYAMGRMPWLW-NNALTFDPSRFEYSPAQYPAFNIP
PRLCLGKHVALLEAKIVIIKLLRKYR-IVAIPSVMKNGFKVRLELR-----
>seq0027
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------ITMNFIIAGKDTTAQLL
SWFFYVITHNR--SDEVISNILNEFDAQSNGYEKMKLQYLEYCLLETLRLFPSVPHLIRF
AKSDIFRVD---YTIRKGDGIVIPLYAMGRMPWIW-ENPDEFDPLRFQFLPSEYPAFNIP
PRLCLGKHVALMEAKIAVIKLLKKYR-FVTQESPMKNGYKVKLIPK-----
>seq0028
--------------------------LPILGRGIIASDGKIWKRHRKVASRMFTLSSLRD
YMFEVFNSTTDTLMDKMLIHKDHVDLYDMYNRLTLEAFTEVAFGVKLGVISFDRGASKFK
ELLFHEKTINNMVWDLVHKCKERL--CDLLSLFI-ITDVELRDITINFVIAGRDTTAQLL
SWFSYLIT-WP----QVEKKVLKEIKEVFPDYGKIKLEYLENAFLETLRMHPSVPHLVRE
AKVDI-HLP---HIIRKGDGVIVPTYAMGRLPWLW-EKPEEMNPDRFQFTPSEYPAFNIP
PRLCLGKHVSLMEAKIQIVKLLPKYK-FEPLPSAMKNGFKVKLVPRDTQ--
>seq0029
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------LRDVAMNFIIAGRDTTAQLL
SWFMYLFT-NK----EIEKPILNEINSII-NYIDVKLKYLENCFFETLRLRPAVPHLLRF
AKTDI-QLK---YVIRKGDGICIPTFAMNRMPWIW-DNPFKFDPNRFDQSPSKYVAFNIP
PRLCLGKHVALLEAKLLVLELLTRFK-IEPVLSAMRNGFKVYFHPR-----
>seq0030
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------YVIRKGDGICIPTFAMNRMPWIW-DNPFKFDPNRFDQSPSKYVAFNIP
PRLCLGKHVALLEAKLLVLELLTRFK-IEPVLSAMRNGFKVYFHPR-----
>seq0031
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------IKLNYLENSFLETLRLRPSVPHLVRK
AVVDI-KIP---HIIRKDDTILVPTYAMGRMEWIW-KDALKFDPTRFEYSPSKYPAFNIK
PRLCLGKHVALLEAKIAIVKLFKKYK-FIPIESLMKNGFRVKLIKRQT---
>seq0032
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------NQ----HVEDKIMDEINQHI-NYNTIKLNYLENSFLETLRLRPSVPHLVRK
AVVDI-KIP---HIIRKDDTILVPTYAMGRMEWIW-KDALKFDPTRFEYSPSKYPAFNIK
PRLCLGKHVALLEAKIAIVKLFKKYK-FIPIESLMKNGFRVKLIKRQTQF-
>seq0033
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------------RVRAAQLL
SWFLYEITENN----EILSNINNEINEYI-NYDNIKLVYLENCFLETLRLRPSVPHLVRQ
ANVDI-NIP---YTIRKDDTIIVPTYAMGRMDYIW-ENPLKFDPNRFKHSPSKYPAFNIK
PRLCLGKHVALLEAKIAIAKLFQKYK-FEPIKSVMKNGFKVKVVPNIFK--
>seq0034
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------SINAEYGNYDNIKLIYLENCFLETLRLRPSVPHLVRQ
ANVDI-PIP---YTIRKDDTIIVPTYAMGRMDYIW-ENALTFDPNRFKYSPSKYPAFNIK
PRLCLGKHVALLEAKIAIAKLFKKYK-FEPIKSVMKNGFKVKVVPIE----
>seq0035
PFIG--HNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKD
YMFEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYG
ELKKHEEIINKKIQDIISKRKEQ---YDIISIFL-ISDKELRDICANFILAGRDTTGQLL
SWFCYEICENK----HIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRV
AKTDI-LIP---HVIRKGDTIIVPCYAMGRMPTIW-KEPLKFDPLRFNFPPCKYPAFNIP
PRLCLGKHVAIMEAKIAIVKLFRKYE-LIPDTSMMKTGFRVRLKSR-----
>seq0036
PFIG--HNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKD
YMFEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYG
ELKKHEEIINKKIQDIISKRKEQ---YDIISIFL-ISDKELRDICANFILAGRDTTGQLL
SWFCYEICENK----HIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRV
AKTDI-LIP---HVIRKGDTIIVPCYAMGRMPTIW-KEPLKFDPLRFNFPPCKYPAFNIP
PRLCLGKHVAIMEAKIAIVKLFRKYE-LIPDTSMMKTGFRVRLKSR-----
>seq0037
------------------------------------------------------------
------------------------------------------------------------
--------------------KQVQ--YDLLSLFL-MSIKELRDISMNFIIAGRDTTAQTL
SWFTYELC--P----HVYDQIMKEIDQVIGTYDLIKLKYLENALLETLRLHPAVPHLLRF
ATRDF-RLP---HIIRKGDGIVCAAYLMGHISHLW-DDPERFDPTRFEYDPSYFPAFNIA
PRICLGKHVALLEAKIAAIKLFKKFK-IIPVPAPMKNGFKVTLHNIETD--
>seq0038
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLLSLFL-MSIKELRDISMNFIIAGRDTTAQTL
SWFIYELS--P----HVQDQIMNEINHVIGDYHLIKLKYLENALLETLRLHPAVPHLLRF
ATRDF-RIP---HIIRKGDGIVCAAYIMGHVPELW-NNPHQFDPTRFEYDPSYFPAFNIA
PRLCLGKHVALLEAKIAAVKLLKKFK-IIPVPAPMKNGFKVTLECRN----
>seq0039
------------------------------------------------------------
------------------------------------------------------------
----------------------IR--YDLLSLFL-ITEKELRDIAMNFIIAGRDTTAQTL
SWFIYELT-SP----DVEENILKEIDS-IGTYENIKFKYLENALLETLRMHPAVPHLVRY
ATRDI-LLR---NIVRKGDGIVVGAYVMGHIPWLW-PDPERFDPTRFEYDPCYFPVFNVA
PRLCLGKHVALLEAKIAAVKLLKKYR-IEAIKAPMRYGFKVKLHPRL----
>seq0040
PFIGHIKNFIFIVDPKIIDLLFD--KRPMFGDGIFSSDGNIWKKHRALASRMFTLRSLRD
YMFKSFCSTTDEFINKLS-----VDIYDMYNRLTLEAFTYVAFGTNLGAIS---------
------------------------------------------------------------
----------------------------------------------------QAPEELEF
TSFDK-ICK------------------------------------RF-FDP---------
------------------IKM------------------------------
>seq0041
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLLSMFI-ITDQELRDITFSFIIAGKDTTAQML
SWFMYHIHN----LQHIFDGVRKEIKEVFGEYDKVKCSFIECCLKESLRLYPSVPHLVRT
AVKDM-KLP---YTLRKGDELFVSTFAMGRMPWIW-KDPLEFKPERFAPDPSVYPAFNIA
PRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAG-------------
>seq0042
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLLSMFI-ITDQELRDITFSFIIAGKDTTAQML
SWFMYHIHN----LQHIFDGVRKEIKEVFGEYDKVKCSFIECCLKESLRLYPSVPHLVRT
AVKDM-KLP---YTLRKGDELFVSTFAMGRMPWIW-KDPLEFKPERFAPDPSVYPAFNIA
PRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAGFQAHLQK------
>seq0043
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------KVKCSFIECCLKESLRLYPSVPHLVRT
AVKDM-KLP---YTLRKGDELFVSTFAMGRMPWIW-KDPLEFKPERFAPDPSVYPAFNIA
PRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAGFQAHLQK------
>seq0044
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------EYEKVKCRYIECCLKESLRLYPSVPHLVRT
AVKDI-KLP---YTVRPGDEVFVSAYAMGRMPWVW-EDPLEFKPERFQPDPSMYPAFNIA
PRICLGRHVALLEGKIAIIKLFTKYKSITAVQSPMGAGFQAHLQK------
>seq0045
------------------------------------------------------------
------------------------------------------------------------
--------------------------FDLISMFI-ITDEELRDITFSFIIAGKDTTAQML
SWLMYHLHK----LQQVMDNIRAEIRRVFGDYEKVQCQYIECCLKESLRLYPSVPYLVRT
PVKDI-ATH---YVIRKGDEVMVAAYSMARMPWLW-DDPLAFKPERFMYDPSLYPAFNIA
PRICLGRHVALMEGKIAVIKLFSKYKNITAVKSPMETGFKAHLNVR-----
>seq0046
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------INFIIAGKDTTAQML
SWFFYHINN----LYDIERKMRDEIEEIFGTYEKVKCDYIECCLNETLRLYPSVPHLVRT
AVKDI-RTP---YVIRKGDEIFISAWSMGRAPWIW-DEPLQFKPERFMIDPSRFPAFNVA
PRICLGKHVALLEGKLALIKIFKKYKHISAVPGPMKVGFKVRMRKE-----
>seq0047
PFVG--HHRIFITNPKIAKQLFDAIKRELLGDGIFATNGQRWREHRAIASHMFTVRSLRD
YMFDVFCYTTDQLLDKLEMTVDDVNIYDMYNRLTFEAFTKIAFGVDVGEIRFDRAELRKK
EMRSHIDWIEDYIYKVIANRRAYY--YDLLSMFL-ISDKELRDITVNFIIAGKDTTAQML
SWFTYHLHK----LIEVENKIRAEITKVFGNYKQVQCTYLECCFLESLRLYPSVPHLARA
AVVDI-ETY---YTIRAGDEVLICPLSMSRLEWIW-PNAEQFIPERFAFDPWVYPAFNIP
PRLCLGKHVALLEGKIALIKLFSRFSSIVRSDAPMPHGYKVHLRKRVEP--
>seq0048
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------IKNIFGKYEDVKCNYIEACLYESLRLYPSVPNLVRT
AIEDI-KLP---HTIRKGEEIVISTYSMGRSKYIW-EDPMKFNPERFIYEPWVYPAFNLK
PRLCLGKHVAILEGKIAIIKLFSQFQSIQAFQSAMKNGLKVVLK-------
>seq0049
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------------IAGRDTTSQML
SWFMFHLTKND-GMDLIEKNIRNEIKNIFGKYEDVKCNYIEACLYESLRLYPSVPNLVRT
AIEDI-KLP---HTIRKGEEIVISTYSMGRSKYIW-EDPMKFNPERFIYEPWVYPAFNLK
PRLCLGKHVAILEGKIAIIKLFSQFQSIQAFQSAMKNGLKVVLK-------
>seq0050
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLLSMFI-ISDRQLRDITMNFIIAGRDTTSQML
SWFMYHLTNSD--MKTIESNIRNEIKTIFGTYDDVKCNYIEACLLESLRLYPSVPNLVRT
AIEDI-QTP---YTIRKNDEIMISTYSIGRSKYIW-KDPLTFNPERFLYDPSVYPAFNLK
PRLCLGKHVALMEGKIAIIKLFNKFKTIKCVPSAMKNGWKVTLE-------
>seq0051
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLLSMFI-ISDDELRDITMNFIIAGRDTTSHML
SWFLFHLTQND-GMSDIEKKIRNEIDNIFGSYEKVKCEYIEACLYETLRLYPSVPHLLRT
AVEDI-KTK---YTIRKGDDIVISAYAMGRSKYIW-DKPLKFDANRFIYDASVYPAFNIQ
PRLCLGKHVAILEGKIALIKLFSRFKTIKCLPSAMKNGWKLDLK-------
>seq0052
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------------------ML
SWFYFHLTQND-GMSEIEKNIRNEIDNIFGSYENVKCEYIEACLYETLRLYPSVPHLLRT
AVEDI-KTK---YTIRKGDDIVISAYAMGRSKYIW-DDPLKFDANRFIYDASVYPAFNIQ
PRLCLGKHVAILEGKIALIKLFTKFKNIKCLPSAMKNGWKLDLK-------
>seq0053
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------VECKYIECCLKETLRLYPSVPHFSRE
MVKDF-KVKI--YTFYKGDEIIITTFPLGRLPWLW-ENADKFIPERFMYDNSQYPAFNIA
PRTCLGKNVALLEGKIAVVAMFTNFKSFQAVPAAM----------------
>seq0054
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------IVENIRKEIIQKFGDYDKVECKYIECCLKETLRLYPSVPHFSRE
MVKDF-KVKI--YTFYKGDEIIITTFPLGRLPWLW-GNADKFIPERFMYDNSQYPAFNIA
PRTCLGKNVALLEGKIAVVAMFTNFKSFQAVPAAMDGGFKIHIH-------
>seq0055
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------IVENIRKEIIEKFGEYNKVECKYIECCLKETLRLYPSVTHFSRE
MVKDF-KLKI--YTFYKGDEIVVTTFAMGRLPWLW-KNAEKFVPERFMYDQSKYVAFNIS
PRTCLGKNVALLEGKIAVIAMFSQFKSFRTVPAAMDGGFNIYVE-------
>seq0056
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------------IAGRDTTSQMI
SWFMFHLLNQSNKRNIIIDNIKNEIISVFGEYDKVQCVYLDACLKETLRLYPSVPHFVRQ
MVTDL-TLNI--YTFEKGDEIVVFTIALGKLPWLW-ENADEFIPERFIYDAEIWPAFNIA
PRTCLGKNVALMEGKMALIAMFSNFKNFKTVAAPFRNGFKIFLD-------
>seq0057
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLLSIFI-INDKFLRDVTMNFIIAGRDTTSQML
SWFIFHLLNEDEKRNVIINNIKKEIVDVFGEYDKVKCSYIEACLKETLRLYPSVPHFVRE
MVSDL-TLNI--YTFHKGDEVIVCTIALGKLPWLW-ENANEFIPERFIYDAHIWPAFNIA
PRTCLGKNVALLEGKTAIIAMFSNFKKMTTVPAPFRNGFNIYLK-------
>seq0058
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------DITMNFIIAGRDTTSQML
SWFMFHLYNEDDKRNVIINNIKNEIISIFGEYNKVKCDYIEACLKETLRMYPSVPHFVRE
MVTDM-KINI--YIFEKGNEIIICTIALGKLPWLW-DNANEFIPERFIYDNHIYPAFNIL
PRTCLGKNVALLEGKIAIISMFSNFNKFKAVP-------------------
>seq0059
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------------------LL
SWFLYLVYENG--KKFIEEKILKEIEEKCPNFSELECEYLESALLETLRLYPSVHHLERT
AVEDI-KLSLEQYIIREGDHIMVEAYALGRATWIWGDDALEFNPLRFYYDPSQYLAFNIA
PRICLGKHVALLEAKLVVIKLLRHFT-IQPVKSAMKNGYKIILKRR-----
>seq0060
------QNVVFISDPVQTKYIYD--RRPMFGHGIFVSDGHEWRKQRKIASRLFTMRNLKH
YMFENFETCSKRLVNKLP-----IDLFDMFNRLTMDGFVASAFGVYSDTIE---------
------------------------------------------------------------
----------------------------------------------------QAPHDTRF
EAFDG-GCD------------------------------------RFIARP---------
-----------------FLETLKHAKRFCSIRERIESGE------------
>seq0061
------------------------------------------------------------
------------------------------------------------------------
-------------------ERIES--HDLLSLFM-FTEEELQDLCLNFIIAGRDTTAENI
SWLMYELSKNP----HVLQLVIDEINTL--TYDNVELTYLESALLETQRLHPSVPTLNRQ
AKRDI-KLP---FTVKKGDIYMVHNYAMGRAPWIW-EDPLRFDPTRFSYEPQVFPQFNIA
PRMCLGKHVAMME--------------------------------------
>seq0062
------------------------------------------------------------
------------------------------------------------------------
--------------------------YNLLSLFLNYTLDELRDICINFIIAGRDTTAETL
TWLCVELSSHP----DIVDQIRNEINQV--TYESLEMKYTESALLETQRLHPSVPSLIRF
AFQDI-VLP---YTIRKGDAVNVFNYAMGRSPWIW-ENPLQFHPPRFQFHPSVYPAFNIG
QRLCLGRHVALMHAKVVLYHLFKHFN-FKAVPAPLKNGFQVHLQPLHPTQN
>seq0063
------------------------------------------------------------
------------------------------------------------------------
---------------------------DLLTLYA-ITRSELQDVCVNFIIAGRDTTALNL
CWLFILLAQNP----HCLQQLKDEIRSI--SFKTLDMTYTESCILEAQRIYPSVPSLTRV
AVTDI-PLP---YVIHKDEIVVISTFAMNRSPKIW-ENPLQFDPSRFEHEPHIYPSFNIG
QRLCLGRHVALLVAKVVLYHFFQNFD-FQIDMAPLTNGLPMRIIPLSSSV-

448
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.aln.With_Names Normal file
View File

@ -0,0 +1,448 @@
>Sr_rh_Pfue_XX_Sr_rh_Pfue_Contig_17829_Len879_Cov11_OG5_126554
------------------------------------------------------------
-------------------------------------------------ISFDASVFKWG
ELAAHMKVVDGFADEMIAKCR-----YDLLSKFI-ISTRELRDILLNFIIAGRDTTAQLL
SWCSYELCRNP----EIQSKIYDELK----TYQTVKMKYLEAVLYESLRLHPSVPNMTRF
ATRDI-QLN---NTIRKGDAVLVSNYVLGRLQKWW-DNPYKFDPMRFYYKAHEYTNFNIP
PRLCLGKHVAMMEAKIGLATILKDYR-MELKPGPMKNGCYINFIDRLSE--
>Sr_rh_PspA_XX_Sr_rh_PspA-LKH285_9262_Len672_Cov8_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLLTKFI-ISTRELRDILLNFIIAGRDTTAQLL
SWCSYELCLNP----EIQDKVYEELS----TYQSVKMKYLEAVLYEALRLHPSVPNMSRF
ATRDI-QLS---DVIRKGDCILVSNYVLGRLHQWW-ENALQFDPMRFYYKAHEYTNFNVP
PRLCLGKHVALMEAKIALATVLKDYR-MELKPGPMKNGCFINFIDRSTK--
>Sr_rh_Al01_XX_Sr_rh_Al01-LKH192_6022_Len1275_Cov17_OG5_126554
-----------------IDLLFDADKSPVLGKGIFVADGNIWKKHRAIASRMFTVRSLRD
YMFEVFMDTTDAFIDKCELYTQCVDIYDMYNRLTLEAFTMVAFGVPLGVISFDDGQTRVR
TLKKHEQIINEFANTIIQKKRKHF--YDIMSLFL-VSDAELRDVALNFIVAGRDTTAQLL
SWFSYAMSENK----GVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRY
AKVDI-ELP---DVIRKGDAIIIPTFAMGRMPWIW-KDPLKFNPDRFNFTPSQYPAFNIP
PRLCLGKHVALMEAKIAIIKLFKKYK-LEAVPSVMKYGFKVKLIPR-----
>Sr_rh_Hg01_XX_Sr_rh_Hg01-LKH304_11955_Len555_Cov4_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------------------LL
SWFSYAMSENK----GVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRY
AKVDI-ELP---DVIRKGDAIIIPTFAMGRMPWIW-KDPLKFNPDRFNFTPSQYPAFNIP
PRLCLGKHVALMEAKIAIIKLFKKYK-LEAVPSVMKYGFKVNLIPR-----
>Sr_rh_HgpA_XX_Sr_rh_HgpA-LKH314_3374_Len948_Cov16_OG5_126554
------------------------------------------------------------
-------------------------------------------------ISFDDGQTRVR
TLKKHVQIINEFANTIIQKKRKHF--YDIMSLFL-VSDAELRDVALNFIVAGRDTTAQLL
SWFSYAMSENK----GVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRY
AKVDI-ELP---DVIRKGDAIIIPTFAMGRMPWIW-KDPLKFNPDRFNFTPSQYPAFNIP
PRLCLGKHVALMEAKIAIIKLFKKYK-LEAVPSVMKYGFKVKLIPR-----
>Sr_rh_Nn01_XX_Sr_rh_Nn01_Contig_13892_Len1674_Cov284_OG5_126554
PYFG--HNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRD
YMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKAR
TLKKHINIINEFANEFIQKKREHL--YDIMWLFL-ISDEELRDIALNFIIAGRDTTAQLL
SWCTYLLSENQ----HVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRY
AKVDI-ALP---DIIRKGDGIVVPTFAMGRMPWIW-KDPLKFNPDRFNYTPSQYPAFNIP
PRLCLGKHVALLEAKIAIIKLFKKYK-LEPVSSVMKNGFKVKLIPRES---
>Sr_rh_Nn02_XX_Sr_rh_Nn02_Contig_13025_Len1674_Cov94_OG5_126554
PYFG--HNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRD
YMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKAR
TLKKHINIINEFANEFIQKKREHL--YDIMWLFL-ISDEELRDIALNFIIAGRDTTAQLL
SWCTYLLSENQ----HVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRY
AKVDI-ALP---DIIRKGDGIVVPTFAMGRMPWIW-KDPLKFNPDRFNYTPSQYPAFNIP
PRLCLGKHVALLEAKIAIIKLFKKYK-LEPVSSVMKNGFKVKLIPRES---
>Sr_rh_Nn10_XX_Sr_rh_Nn10_Contig_21569_Len1563_Cov139_OG5_126554
PYFG--HNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRD
YMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKAR
TLKKHINIINEFANEFIQKKREHL--YDIMWLFL-ISDEELRDIALNFIIAGRDTTAQLL
SWCTYLLSENQ----HVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRY
AKVDI-ALP---DIIRKGDGIVVPTFAMGRMPWIW-KDPLKFNPDRFNYTPSQYPAFNIP
PRLCLGKHVALLEAKIAIIKLFKKYK-LEPVSSVMKNGFKVKLIPR-----
>Sr_rh_Emac_XX_Sr_rh_Emac_Contig_11467_Len1551_Cov70_OG5_126554
PYFG--HHFIFVVDPALIDLLFDADKRPILGRGIFTSDGLLWKKHRSIASRMFTVRSLRD
YMFQVFRDTTDTFMSKCEICANHVDIYDMFHRLTLEAFTQVAFGVSLGVIAFDDAQTKAR
TLKAHVKVINEFAERIIRSKRKDY--YDIMSLFL-ISDQELRDMALNFIIAGRDTTAQLL
SWFSYAMTENA----DVESKLLAELRQAVADYDAIDCTYLENALLESLRLRPSVPHLVRY
AKVDI-DLP---ETIRKGNGIVIPTFAMGRMPWIW-KDPLKFDPDRFNYTASQYPAFNIP
PRLCLGKHVALLEAKIAVVKLFTKYK-LVPMPSVMKNGFKVKLIPRE----
>Sr_rh_Al02_XX_Sr_rh_Al02-LKH279_3746_Len555_Cov10_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------------------LM
SWFSYAMTENE----EVEKKIVEEIRLYVGDYNTINCQYLENAFLESLRMRPVLPHLVRY
AKVDI-ALP---HVIRKGDGLIVPSFAMGRMPWIW-KDPNTFNPDRFKYTPAQYPAFNIP
PRLCLGKHVALLEAKIMIIKLFKKYK-LEAVPNIMKNGLKVRLIPRGK---
>Sr_rh_As04_XX_Sr_rh_As04-LKH296_1295_Len732_Cov6_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLMSLFL-ISDDELRDVALNFILAGRDTTAQLM
SWFSYAMTENE----EVEKKIVEEIRLYVGDYNTINCQYLENAFLESLRMRPVLPHLVRY
AKVDI-ALP---HVIRKGDGLIVPSFAMGRMPWIW-KDPNTFNPDRFKYTPAQYPAFNIP
PRLCLGKHVALLEAKIMIIKLFKKYK-LEAVPNIMKNGLKVRLIPRGK---
>Sr_rh_As01_XX_Sr_rh_As01-LKH294_6033_Len771_Cov5_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLMSLFL-VSDDELRDVALNFIIAGRDTTAQLL
SWFSYAITENE----EVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRY
AKVDI-TLP---DVVRKGDGIIIPTYAMGRMPWIW-KDPLKFDPDRFNYSPSQYPAFNIP
PRLCLGKHVALLEAKIAIIKLFKKYK-LEALPSVMKNGFKVRLVPRCK---
>Sr_rh_As05_XX_Sr_rh_As05-LKH295_5839_Len819_Cov11_OG5_126554
------------------------------------------------------------
-----------------------------------------------------------R
S----------------SSKKQHF--YDLMSLFL-VSDDELRDVALNFIIAGRDTTAQLL
SWFSYAITENE----EVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRY
AKVDI-TLP---DVVRKGDGIIIPTYAMGRMPWIW-KDPLKFDPDRFNYSPSQYPAFNIP
PRLCLGKHVALLEAKIAIIKLFKKYK-LDALPSVMKNGFKVRLVPRCK---
>Sr_rh_As03_XX_Sr_rh_As03-LKH313_6888_Len702_Cov8_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLMSLFL-VSDDELRDVALNFIIAGRDTTAQLL
SWFSYAITENE----EVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRY
AKVDI-TLP---DVVRKGDGIIIPTYAMGRMPWIW-KDPLKFDPDRFNYSPSQYPAFNIP
PRLCLGKHVALLEAKIAIIKLFKKYK-LEALPSVMKNGFKVRLVPRCK---
>Sr_rh_As02_XX_Sr_rh_As02-LKH324_15814_Len489_Cov16_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------MNQFIGNYDMLNCQYLESSFYESLRLQPSLPHLVRY
AKVDI-PLP---DVIRKGDGVIVPMYAMGRMPWLW-KNPDKFDPERFNYTPAEYPAFNIP
PRVCLGKHVALMEAKIAVIKLLKKFK-LEALPTVMKNGFKVKLIPRCK---
>Sr_rh_Ts02_XX_Sr_rh_Ts02-LKH320_6145_Len708_Cov5_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLMSLFL-ITDDELRDIALNFIIAGRDTTAQLL
SWFSYCITDNK----QIEENIMNEINQYIGDYNVIQCEYLESSFLETLRLRPSVPHLVRY
AKIDI-KLP---DIIRKGDGIVIPTYAMGRMPWIW-NDPLKFNPDRFNYSPSQYPAFNIP
PRLCLGKHVALLEAKIAIIKLFKKYK-LQPLPSIMRNGFKVKLIPRDSK--
>Sr_rh_Calb_XX_Contig_7745_Len1683_Cov38_OG5_126554
PLIG--HNFIFMVSPKLIDLLFDSNKLPILGHGIFNADGQLWKKHRSIASRMFTVRSLRD
YMFNVFVDTTDKWILKSEILKNFVDIYNMNLRLTMEAFTKVAFGVDLGTIAMDDGITKLK
SLKKHSHILNDFAKKVIDDRKS----YDLLSLFL-VNVSELRDVCINFIVAGRDTTAQLL
SWFMYELS-NP----KIEEKIMEEINEYIGEYKQIECEYLENCLLETLRLRPSVPHLVRY
AKCDI-ELPG--HIIRKGDGIVIPTYAMGRMPWIW-KDPLKFNPDRFKHPPSKYPAFNIP
PRLCLGKHVALLEAKIAIVKLFKKYK-LVKLPSVMKYGYKVKLEPRNQ---
>Sr_rh_RspA_XX_Sr_rh_RspA-LKH290_4671_Len1062_Cov25_OG5_126554
------------------------------------------------------------
-----FNDTTDDFIAKCEICEMSVNIYDMFHRLTLEAFTMVAFGVPLGVISFDEGRTKWR
TLKKHLKIINEFASNIIHKKRQQF--YDLISLFM-ITDEELRDIALNFIIAGRDTTAQLL
SWFSYLVTENE----SVESKIMNEINECVADYNMVKCEYLENAFLETLRLRPSVPHLVRY
AKTDI-KLP---HIIRKGDGIVIPTFAMGRMPWIW-SNPLEFNPDRFKFTPAEYPAFNLP
PRLCLGKHVALLEAKIAIIKLFKKYK-LEAVPSVMKYGFNVKLVPRKQET-
>Sr_rh_FF02_XX_Sr_rh_FF02_Contig_1649_Len957_Cov10_OG5_126554
------------------------------------------------------------
---------------------------NMYNRLTLEAFTQVAFGVPLGCISFDRGQSKLR
ELRKHLKVVNEFVSKVIVERK-----FDLLSLFL-TSDKELRDVAMNFIVAGRDTTAQLL
SWFSYLISENQ----ECEAKVTKEIMEHVPTYEMVKCQYLENALLETLRLRPSVPHLVRF
AKVDI-LLP---HVIRKGDGIVVPTYAMGRMPSLW-KDPLKFDPSRFEYTPSEYPAFNIP
PRLCLGKHVALLESKIAIIRLFRKFK-LEPLSSIMKNGFRVKLVPR-----
>Sr_rh_Hind_XX_Contig_12080_Len1260_Cov53_OG5_126554
--------------------------KPVFGVGILSTDGKLWKKYRSIGSRIFTVRSLRD
FMYEVFDSTSSALVKKSLIQEQFVDLYNMFNRLTLEAFTHIAFGVSMKTIAFDRSQWDFK
ELKKHAGILNDKIGLLVRQRKEQY--KDLLTLYF-ATDLELRDLIMNFVVAGRDTTAQLC
SWFSYEISEHA----HVDARILEEIHTYVGTYQMVKLKYMESCFLETLRLHPSVPHLVRF
ALVDI-KLP---HVIRKGDGVVVPVYAMGRMPWLW-PKPLVFDPMRFEYTPALFPAFNIP
PRLCLGKHLALLEAKVVMVKILRKYR-IVARESIMKDGFYARLQPRAQQQQ
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_20076_Len1179_Cov40_OG5_126554
---------------------------------------------------MFTVRALRD
YMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWR
ELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLL
SWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRY
AKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLP
PRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19982_Len1182_Cov79_OG5_126554
---------------------------------------------------MFTVRALRD
YMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWR
ELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLL
SWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRY
AKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLP
PRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_20382_Len1167_Cov94_OG5_126554
---------------------------------------------------MFTVRALRD
YMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWR
ELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLL
SWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRY
AKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLP
PRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19888_Len1155_Cov80_OG5_126554
------------------------------------------------------------
-MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWR
ELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLL
SWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRY
AKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLP
PRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19044_Len1188_Cov38_OG5_126554
------------------------------------------------------------
-MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWR
ELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFL-ASYKELKDVTMNFIMAGKDTTAQLL
SWFSWSLT-NP----EVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRY
AKVDI-PLP---HVIRKGDGIVVPTYAMGRMAWLW-PNPTKFDPTRFEFTPAVYPAFNLP
PRVCLGKHVALLECKIVMIKLLRRFR-IVACESAMKHGFKVRFEPREESAK
>Sr_rh_Pina_XX_Contig_8772_Len858_Cov33_OG5_126554
PFFG--HNFIFLCDPKLIDLIFDAEKKPMLGHGIFLSDGARWKKQRSIASRMFTVRSLRD
YMFEVFVDTSNTFIDKCLIQSEEIDIYDMFNRLTLEAFTEVAFGVSLNIMSFDRGQ----
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------
>Sr_rh_Slin_XX_Contig_3275_Len1587_Cov14_OG5_126554
PFFG--HNFIFLCDPKLIDFVFDANKKPLLGHGIFVSDGAKWKKHRSIASHMFTVRSLRE
YMFEVFVDTSNTFLDKCLIQSKEIDIYNMFNRLTLEAFTKVAFGVSLNIISFDRGQTAWR
ELHIHTAIIEQQISEVIQRNVN----YDLLSLFL-ASENELRDVAMNFIIAGRDTTAQLL
SWFSYLLT-NP----KVEQMIVDEINANIGDYEMVKCQYLENAFLETLRLHPSVPHLVRY
AKTDI-PLL---NIIRKGDCIIIPTYAMGRMPWLW-NNALTFDPSRFEYSPAQYPAFNIP
PRLCLGKHVALLEAKIVIIKLLRKYR-IVAIPSVMKNGFKVRLELR-----
>Sr_rh_FF02_XX_Sr_rh_FF02_Contig_3920_Len636_Cov5_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------ITMNFIIAGKDTTAQLL
SWFFYVITHNR--SDEVISNILNEFDAQSNGYEKMKLQYLEYCLLETLRLFPSVPHLIRF
AKSDIFRVD---YTIRKGDGIVIPLYAMGRMPWIW-ENPDEFDPLRFQFLPSEYPAFNIP
PRLCLGKHVALMEAKIAVIKLLKKYR-FVTQESPMKNGYKVKLIPK-----
>Sr_rh_PspA_XX_Sr_rh_PspA-LKH285_926_Len1191_Cov12_OG5_126554
--------------------------LPILGRGIIASDGKIWKRHRKVASRMFTLSSLRD
YMFEVFNSTTDTLMDKMLIHKDHVDLYDMYNRLTLEAFTEVAFGVKLGVISFDRGASKFK
ELLFHEKTINNMVWDLVHKCKERL--CDLLSLFI-ITDVELRDITINFVIAGRDTTAQLL
SWFSYLIT-WP----QVEKKVLKEIKEVFPDYGKIKLEYLENAFLETLRMHPSVPHLVRE
AKVDI-HLP---HIIRKGDGVIVPTYAMGRLPWLW-EKPEEMNPDRFQFTPSEYPAFNIP
PRLCLGKHVSLMEAKIQIVKLLPKYK-FEPLPSAMKNGFKVKLVPRDTQ--
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_3536_Len591_Cov9_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------LRDVAMNFIIAGRDTTAQLL
SWFMYLFT-NK----EIEKPILNEINSII-NYIDVKLKYLENCFFETLRLRPAVPHLLRF
AKTDI-QLK---YVIRKGDGICIPTFAMNRMPWIW-DNPFKFDPNRFDQSPSKYVAFNIP
PRLCLGKHVALLEAKLLVLELLTRFK-IEPVLSAMRNGFKVYFHPR-----
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_14775_Len321_Cov15_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------YVIRKGDGICIPTFAMNRMPWIW-DNPFKFDPNRFDQSPSKYVAFNIP
PRLCLGKHVALLEAKLLVLELLTRFK-IEPVLSAMRNGFKVYFHPR-----
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_8241_Len441_Cov6_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------IKLNYLENSFLETLRLRPSVPHLVRK
AVVDI-KIP---HIIRKDDTILVPTYAMGRMEWIW-KDALKFDPTRFEYSPSKYPAFNIK
PRLCLGKHVALLEAKIAIVKLFKKYK-FIPIESLMKNGFRVKLIKRQT---
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_5955_Len525_Cov17_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------NQ----HVEDKIMDEINQHI-NYNTIKLNYLENSFLETLRLRPSVPHLVRK
AVVDI-KIP---HIIRKDDTILVPTYAMGRMEWIW-KDALKFDPTRFEYSPSKYPAFNIK
PRLCLGKHVALLEAKIAIVKLFKKYK-FIPIESLMKNGFRVKLIKRQTQF-
>Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_6707_Len579_Cov20_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------------RVRAAQLL
SWFLYEITENN----EILSNINNEINEYI-NYDNIKLVYLENCFLETLRLRPSVPHLVRQ
ANVDI-NIP---YTIRKDDTIIVPTYAMGRMDYIW-ENPLKFDPNRFKHSPSKYPAFNIK
PRLCLGKHVALLEAKIAIAKLFQKYK-FEPIKSVMKNGFKVKVVPNIFK--
>Sr_rh_Tr01_XX_Sr_rh_Tr01_Contig_9807_Len483_Cov16_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------SINAEYGNYDNIKLIYLENCFLETLRLRPSVPHLVRQ
ANVDI-PIP---YTIRKDDTIIVPTYAMGRMDYIW-ENALTFDPNRFKYSPSKYPAFNIK
PRLCLGKHVALLEAKIAIAKLFKKYK-FEPIKSVMKNGFKVKVVPIE----
>Sr_rh_Bv04_XX_Sr_rh_Bv04_Contig_12687_Len1599_Cov64_OG5_126554
PFIG--HNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKD
YMFEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYG
ELKKHEEIINKKIQDIISKRKEQ---YDIISIFL-ISDKELRDICANFILAGRDTTGQLL
SWFCYEICENK----HIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRV
AKTDI-LIP---HVIRKGDTIIVPCYAMGRMPTIW-KEPLKFDPLRFNFPPCKYPAFNIP
PRLCLGKHVAIMEAKIAIVKLFRKYE-LIPDTSMMKTGFRVRLKSR-----
>Sr_rh_Bv05_XX_Sr_rh_Bv05_Contig_10933_Len1599_Cov61_OG5_126554
PFIG--HNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKD
YMFEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYG
ELKKHEEIINKKIQDIISKRKEQ---YDIISIFL-ISDKELRDICANFILAGRDTTGQLL
SWFCYEICENK----HIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRV
AKTDI-LIP---HVIRKGDTIIVPCYAMGRMPTIW-KEPLKFDPLRFNFPPCKYPAFNIP
PRLCLGKHVAIMEAKIAIVKLFRKYE-LIPDTSMMKTGFRVRLKSR-----
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_10605_Len690_Cov15_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
--------------------KQVQ--YDLLSLFL-MSIKELRDISMNFIIAGRDTTAQTL
SWFTYELC--P----HVYDQIMKEIDQVIGTYDLIKLKYLENALLETLRLHPAVPHLLRF
ATRDF-RLP---HIIRKGDGIVCAAYLMGHISHLW-DDPERFDPTRFEYDPSYFPAFNIA
PRICLGKHVALLEAKIAAIKLFKKFK-IIPVPAPMKNGFKVTLHNIETD--
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_18259_Len648_Cov21_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLLSLFL-MSIKELRDISMNFIIAGRDTTAQTL
SWFIYELS--P----HVQDQIMNEINHVIGDYHLIKLKYLENALLETLRLHPAVPHLLRF
ATRDF-RIP---HIIRKGDGIVCAAYIMGHVPELW-NNPHQFDPTRFEYDPSYFPAFNIA
PRLCLGKHVALLEAKIAAVKLLKKFK-IIPVPAPMKNGFKVTLECRN----
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_13702_Len678_Cov20_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
----------------------IR--YDLLSLFL-ITEKELRDIAMNFIIAGRDTTAQTL
SWFIYELT-SP----DVEENILKEIDS-IGTYENIKFKYLENALLETLRMHPAVPHLVRY
ATRDI-LLR---NIVRKGDGIVVGAYVMGHIPWLW-PDPERFDPTRFEYDPCYFPVFNVA
PRLCLGKHVALLEAKIAAVKLLKKYR-IEAIKAPMRYGFKVKLHPRL----
>Sr_rh_Ssp1_XX_Contig_1307_Len810_Cov61_OG5_126554
PFIGHIKNFIFIVDPKIIDLLFD--KRPMFGDGIFSSDGNIWKKHRALASRMFTLRSLRD
YMFKSFCSTTDEFINKLS-----VDIYDMYNRLTLEAFTYVAFGTNLGAIS---------
------------------------------------------------------------
----------------------------------------------------QAPEELEF
TSFDK-ICK------------------------------------RF-FDP---------
------------------IKM------------------------------
>Sr_rh_As01_XX_Sr_rh_As01-LKH294_2597_Len693_Cov4_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLLSMFI-ITDQELRDITFSFIIAGKDTTAQML
SWFMYHIHN----LQHIFDGVRKEIKEVFGEYDKVKCSFIECCLKESLRLYPSVPHLVRT
AVKDM-KLP---YTLRKGDELFVSTFAMGRMPWIW-KDPLEFKPERFAPDPSVYPAFNIA
PRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAG-------------
>Sr_rh_As03_XX_Sr_rh_As03-LKH313_10378_Len717_Cov12_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLLSMFI-ITDQELRDITFSFIIAGKDTTAQML
SWFMYHIHN----LQHIFDGVRKEIKEVFGEYDKVKCSFIECCLKESLRLYPSVPHLVRT
AVKDM-KLP---YTLRKGDELFVSTFAMGRMPWIW-KDPLEFKPERFAPDPSVYPAFNIA
PRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAGFQAHLQK------
>Sr_rh_As05_XX_Sr_rh_As05-LKH295_19507_Len444_Cov9_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------KVKCSFIECCLKESLRLYPSVPHLVRT
AVKDM-KLP---YTLRKGDELFVSTFAMGRMPWIW-KDPLEFKPERFAPDPSVYPAFNIA
PRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAGFQAHLQK------
>Sr_rh_As02_XX_Sr_rh_As02-LKH324_14147_Len456_Cov8_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------EYEKVKCRYIECCLKESLRLYPSVPHLVRT
AVKDI-KLP---YTVRPGDEVFVSAYAMGRMPWVW-EDPLEFKPERFQPDPSMYPAFNIA
PRICLGRHVALLEGKIAIIKLFTKYKSITAVQSPMGAGFQAHLQK------
>Sr_rh_Emar_XX_Contig_8285_Len723_Cov12_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
--------------------------FDLISMFI-ITDEELRDITFSFIIAGKDTTAQML
SWLMYHLHK----LQQVMDNIRAEIRRVFGDYEKVQCQYIECCLKESLRLYPSVPYLVRT
PVKDI-ATH---YVIRKGDEVMVAAYSMARMPWLW-DDPLAFKPERFMYDPSLYPAFNIA
PRICLGRHVALMEGKIAVIKLFSKYKNITAVKSPMETGFKAHLNVR-----
>Sr_rh_Hg01_XX_Sr_rh_Hg01-LKH304_7769_Len600_Cov7_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------INFIIAGKDTTAQML
SWFFYHINN----LYDIERKMRDEIEEIFGTYEKVKCDYIECCLNETLRLYPSVPHLVRT
AVKDI-RTP---YVIRKGDEIFISAWSMGRAPWIW-DEPLQFKPERFMIDPSRFPAFNVA
PRICLGKHVALLEGKLALIKIFKKYKHISAVPGPMKVGFKVRMRKE-----
>Sr_rh_Hind_XX_Contig_2010_Len1647_Cov26_OG5_126554
PFVG--HHRIFITNPKIAKQLFDAIKRELLGDGIFATNGQRWREHRAIASHMFTVRSLRD
YMFDVFCYTTDQLLDKLEMTVDDVNIYDMYNRLTFEAFTKIAFGVDVGEIRFDRAELRKK
EMRSHIDWIEDYIYKVIANRRAYY--YDLLSMFL-ISDKELRDITVNFIIAGKDTTAQML
SWFTYHLHK----LIEVENKIRAEITKVFGNYKQVQCTYLECCFLESLRLYPSVPHLARA
AVVDI-ETY---YTIRAGDEVLICPLSMSRLEWIW-PNAEQFIPERFAFDPWVYPAFNIP
PRLCLGKHVALLEGKIALIKLFSRFSSIVRSDAPMPHGYKVHLRKRVEP--
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_6436_Len489_Cov15_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------IKNIFGKYEDVKCNYIEACLYESLRLYPSVPNLVRT
AIEDI-KLP---HTIRKGEEIVISTYSMGRSKYIW-EDPMKFNPERFIYEPWVYPAFNLK
PRLCLGKHVAILEGKIAIIKLFSQFQSIQAFQSAMKNGLKVVLK-------
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_6395_Len597_Cov13_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------------IAGRDTTSQML
SWFMFHLTKND-GMDLIEKNIRNEIKNIFGKYEDVKCNYIEACLYESLRLYPSVPNLVRT
AIEDI-KLP---HTIRKGEEIVISTYSMGRSKYIW-EDPMKFNPERFIYEPWVYPAFNLK
PRLCLGKHVAILEGKIAIIKLFSQFQSIQAFQSAMKNGLKVVLK-------
>Sr_rh_Sspa_XX_Contig_5747_Len702_Cov21_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLLSMFI-ISDRQLRDITMNFIIAGRDTTSQML
SWFMYHLTNSD--MKTIESNIRNEIKTIFGTYDDVKCNYIEACLLESLRLYPSVPNLVRT
AIEDI-QTP---YTIRKNDEIMISTYSIGRSKYIW-KDPLTFNPERFLYDPSVYPAFNLK
PRLCLGKHVALMEGKIAIIKLFNKFKTIKCVPSAMKNGWKVTLE-------
>Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_256_Len708_Cov14_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLLSMFI-ISDDELRDITMNFIIAGRDTTSHML
SWFLFHLTQND-GMSDIEKKIRNEIDNIFGSYEKVKCEYIEACLYETLRLYPSVPHLLRT
AVEDI-KTK---YTIRKGDDIVISAYAMGRSKYIW-DKPLKFDANRFIYDASVYPAFNIQ
PRLCLGKHVAILEGKIALIKLFSRFKTIKCLPSAMKNGWKLDLK-------
>Sr_rh_QjpA_XX_Sr_rh_QjpA-LKH288_9889_Len564_Cov19_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------------------ML
SWFYFHLTQND-GMSEIEKNIRNEIDNIFGSYENVKCEYIEACLYETLRLYPSVPHLLRT
AVEDI-KTK---YTIRKGDDIVISAYAMGRSKYIW-DDPLKFDANRFIYDASVYPAFNIQ
PRLCLGKHVAILEGKIALIKLFTKFKNIKCLPSAMKNGWKLDLK-------
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_13181_Len408_Cov3_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------VECKYIECCLKETLRLYPSVPHFSRE
MVKDF-KVKI--YTFYKGDEIIITTFPLGRLPWLW-ENADKFIPERFMYDNSQYPAFNIA
PRTCLGKNVALLEGKIAVVAMFTNFKSFQAVPAAM----------------
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_6167_Len516_Cov7_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------IVENIRKEIIQKFGDYDKVECKYIECCLKETLRLYPSVPHFSRE
MVKDF-KVKI--YTFYKGDEIIITTFPLGRLPWLW-GNADKFIPERFMYDNSQYPAFNIA
PRTCLGKNVALLEGKIAVVAMFTNFKSFQAVPAAMDGGFKIHIH-------
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_190_Len516_Cov4_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------IVENIRKEIIEKFGEYNKVECKYIECCLKETLRLYPSVTHFSRE
MVKDF-KLKI--YTFYKGDEIVVTTFAMGRLPWLW-KNAEKFVPERFMYDQSKYVAFNIS
PRTCLGKNVALLEGKIAVIAMFSQFKSFRTVPAAMDGGFNIYVE-------
>Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_6601_Len603_Cov10_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------------IAGRDTTSQMI
SWFMFHLLNQSNKRNIIIDNIKNEIISVFGEYDKVQCVYLDACLKETLRLYPSVPHFVRQ
MVTDL-TLNI--YTFEKGDEIVVFTIALGKLPWLW-ENADEFIPERFIYDAEIWPAFNIA
PRTCLGKNVALMEGKMALIAMFSNFKNFKTVAAPFRNGFKIFLD-------
>Sr_rh_Tr01_XX_Sr_rh_Tr01_Contig_5346_Len690_Cov14_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
--------------------------YDLLSIFI-INDKFLRDVTMNFIIAGRDTTSQML
SWFIFHLLNEDEKRNVIINNIKKEIVDVFGEYDKVKCSYIEACLKETLRLYPSVPHFVRE
MVSDL-TLNI--YTFHKGDEVIVCTIALGKLPWLW-ENANEFIPERFIYDAHIWPAFNIA
PRTCLGKNVALLEGKTAIIAMFSNFKKMTTVPAPFRNGFNIYLK-------
>Sr_rh_Tr02_XX_Sr_rh_Tr02_Contig_17503_Len567_Cov70_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------DITMNFIIAGRDTTSQML
SWFMFHLYNEDDKRNVIINNIKNEIISIFGEYNKVKCDYIEACLKETLRMYPSVPHFVRE
MVTDM-KINI--YIFEKGNEIIICTIALGKLPWLW-DNANEFIPERFIYDNHIYPAFNIL
PRTCLGKNVALLEGKIAIISMFSNFNKFKAVP-------------------
>Sr_rh_FF02_XX_Sr_rh_FF02_Contig_5686_Len600_Cov5_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------------------LL
SWFLYLVYENG--KKFIEEKILKEIEEKCPNFSELECEYLESALLETLRLYPSVHHLERT
AVEDI-KLSLEQYIIREGDHIMVEAYALGRATWIWGDDALEFNPLRFYYDPSQYLAFNIA
PRICLGKHVALLEAKLVVIKLLRHFT-IQPVKSAMKNGYKIILKRR-----
>Sr_rh_Hhir_XX_Contig_20411_Len594_Cov57_OG5_126554
------QNVVFISDPVQTKYIYD--RRPMFGHGIFVSDGHEWRKQRKIASRLFTMRNLKH
YMFENFETCSKRLVNKLP-----IDLFDMFNRLTMDGFVASAFGVYSDTIE---------
------------------------------------------------------------
----------------------------------------------------QAPHDTRF
EAFDG-GCD------------------------------------RFIARP---------
-----------------FLETLKHAKRFCSIRERIESGE------------
>Sr_rh_Pfue_XX_Sr_rh_Pfue_Contig_20190_Len552_Cov3_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
-------------------ERIES--HDLLSLFM-FTEEELQDLCLNFIIAGRDTTAENI
SWLMYELSKNP----HVLQLVIDEINTL--TYDNVELTYLESALLETQRLHPSVPTLNRQ
AKRDI-KLP---FTVKKGDIYMVHNYAMGRAPWIW-EDPLRFDPTRFSYEPQVFPQFNIA
PRMCLGKHVAMME--------------------------------------
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_13699_Len690_Cov51_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
--------------------------YNLLSLFLNYTLDELRDICINFIIAGRDTTAETL
TWLCVELSSHP----DIVDQIRNEINQV--TYESLEMKYTESALLETQRLHPSVPSLIRF
AFQDI-VLP---YTIRKGDAVNVFNYAMGRSPWIW-ENPLQFHPPRFQFHPSVYPAFNIG
QRLCLGRHVALMHAKVVLYHLFKHFN-FKAVPAPLKNGFQVHLQPLHPTQN
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_18519_Len663_Cov18_OG5_126554
------------------------------------------------------------
------------------------------------------------------------
---------------------------DLLTLYA-ITRSELQDVCVNFIIAGRDTTALNL
CWLFILLAQNP----HCLQQLKDEIRSI--SFKTLDMTYTESCILEAQRIYPSVPSLTRV
AVTDI-PLP---YVIHKDEIVVISTFAMNRSPKIW-ENPLQFDPSRFEHEPHIYPSFNIG
QRLCLGRHVALLVAKVVLYHFFQNFD-FQIDMAPLTNGLPMRIIPLSSSV-

0
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.msa_set_score.std Normal file
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1
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/MSA.MAFFT.semphy.tree Normal file
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@ -0,0 +1 @@
((seq0017:0.159520,((((seq0029:0.000335,seq0030:0.000001):0.298687,((seq0026:0.118374,((seq0022:0.000001,(seq0021:0.000001,(seq0020:0.000001,(seq0023:0.000001,seq0024:0.000001):0.003307):0.001691):0.000865):0.194370,(seq0019:0.213074,(seq0047:0.000001,(seq0040:0.218288,seq0060:0.741067):0.558436):0.264600):0.089062):0.026603):0.078072,(((seq0059:0.416185,(((seq0051:0.002343,seq0052:0.051365):0.156768,(seq0050:0.102723,(seq0048:0.000001,seq0049:0.000606):0.156109):0.026679):0.088477,(seq0046:0.251155,(((seq0055:0.122540,(seq0053:0.000001,seq0054:0.050064):0.060836):0.112993,(seq0058:0.094203,(seq0056:0.146811,seq0057:0.074128):0.032205):0.099845):0.238408,(seq0045:0.176854,(seq0044:0.062128,(seq0041:0.000001,(seq0042:0.014202,seq0043:0.000001):0.007922):0.069848):0.072547):0.053735):0.020337):0.040887):0.078664):0.063075,((seq0039:0.164075,(seq0037:0.088700,seq0038:0.060206):0.105530):0.093641,((seq0000:0.095561,seq0001:0.071802):0.371565,(seq0061:0.262548,(seq0062:0.274390,(seq0025:0.000001,seq0063:0.456008):0.072702):0.040402):0.114369):0.042115):0.053357):0.040190,(seq0027:0.279481,seq0028:0.236863):0.026728):0.009003):0.005029):0.027732,(seq0018:0.176464,((seq0035:0.000001,seq0036:0.000001):0.279842,((seq0033:0.064803,seq0034:0.034665):0.126784,(seq0031:0.000001,seq0032:0.021257):0.110018):0.058727):0.055398):0.008537):0.026864,(seq0015:0.079754,seq0016:0.205938):0.020846):0.015120):0.020439,((seq0009:0.022972,seq0010:0.000001):0.164226,(seq0014:0.189401,(seq0011:0.000001,(seq0012:0.012592,seq0013:0.000001):0.003812):0.062063):0.019146):0.014995,(seq0008:0.161694,((seq0007:0.000001,(seq0005:0.000001,seq0006:0.000001):0.002884):0.117868,(seq0002:0.000001,(seq0003:0.002943,seq0004:0.003582):0.007856):0.097737):0.007560):0.006500);

10
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/SampledOPVals.log Normal file
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@ -0,0 +1,10 @@
2.000817428956
2.58462865668747
1.49936059497511
1.23331485380722
2.15783221114012
2.90590667209469
2.63676633992571
2.80645936921989
1.84405518368005
2.13819830457351

64
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/Seqs.Codes Normal file
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@ -0,0 +1,64 @@
Sr_rh_Pfue_XX_Sr_rh_Pfue_Contig_17829_Len879_Cov11_OG5_126554 seq0000
Sr_rh_PspA_XX_Sr_rh_PspA-LKH285_9262_Len672_Cov8_OG5_126554 seq0001
Sr_rh_Al01_XX_Sr_rh_Al01-LKH192_6022_Len1275_Cov17_OG5_126554 seq0002
Sr_rh_Hg01_XX_Sr_rh_Hg01-LKH304_11955_Len555_Cov4_OG5_126554 seq0003
Sr_rh_HgpA_XX_Sr_rh_HgpA-LKH314_3374_Len948_Cov16_OG5_126554 seq0004
Sr_rh_Nn01_XX_Sr_rh_Nn01_Contig_13892_Len1674_Cov284_OG5_126554 seq0005
Sr_rh_Nn02_XX_Sr_rh_Nn02_Contig_13025_Len1674_Cov94_OG5_126554 seq0006
Sr_rh_Nn10_XX_Sr_rh_Nn10_Contig_21569_Len1563_Cov139_OG5_126554 seq0007
Sr_rh_Emac_XX_Sr_rh_Emac_Contig_11467_Len1551_Cov70_OG5_126554 seq0008
Sr_rh_Al02_XX_Sr_rh_Al02-LKH279_3746_Len555_Cov10_OG5_126554 seq0009
Sr_rh_As04_XX_Sr_rh_As04-LKH296_1295_Len732_Cov6_OG5_126554 seq0010
Sr_rh_As01_XX_Sr_rh_As01-LKH294_6033_Len771_Cov5_OG5_126554 seq0011
Sr_rh_As05_XX_Sr_rh_As05-LKH295_5839_Len819_Cov11_OG5_126554 seq0012
Sr_rh_As03_XX_Sr_rh_As03-LKH313_6888_Len702_Cov8_OG5_126554 seq0013
Sr_rh_As02_XX_Sr_rh_As02-LKH324_15814_Len489_Cov16_OG5_126554 seq0014
Sr_rh_Ts02_XX_Sr_rh_Ts02-LKH320_6145_Len708_Cov5_OG5_126554 seq0015
Sr_rh_Calb_XX_Contig_7745_Len1683_Cov38_OG5_126554 seq0016
Sr_rh_RspA_XX_Sr_rh_RspA-LKH290_4671_Len1062_Cov25_OG5_126554 seq0017
Sr_rh_FF02_XX_Sr_rh_FF02_Contig_1649_Len957_Cov10_OG5_126554 seq0018
Sr_rh_Hind_XX_Contig_12080_Len1260_Cov53_OG5_126554 seq0019
Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_20076_Len1179_Cov40_OG5_126554 seq0020
Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19982_Len1182_Cov79_OG5_126554 seq0021
Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_20382_Len1167_Cov94_OG5_126554 seq0022
Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19888_Len1155_Cov80_OG5_126554 seq0023
Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19044_Len1188_Cov38_OG5_126554 seq0024
Sr_rh_Pina_XX_Contig_8772_Len858_Cov33_OG5_126554 seq0025
Sr_rh_Slin_XX_Contig_3275_Len1587_Cov14_OG5_126554 seq0026
Sr_rh_FF02_XX_Sr_rh_FF02_Contig_3920_Len636_Cov5_OG5_126554 seq0027
Sr_rh_PspA_XX_Sr_rh_PspA-LKH285_926_Len1191_Cov12_OG5_126554 seq0028
Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_3536_Len591_Cov9_OG5_126554 seq0029
Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_14775_Len321_Cov15_OG5_126554 seq0030
Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_8241_Len441_Cov6_OG5_126554 seq0031
Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_5955_Len525_Cov17_OG5_126554 seq0032
Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_6707_Len579_Cov20_OG5_126554 seq0033
Sr_rh_Tr01_XX_Sr_rh_Tr01_Contig_9807_Len483_Cov16_OG5_126554 seq0034
Sr_rh_Bv04_XX_Sr_rh_Bv04_Contig_12687_Len1599_Cov64_OG5_126554 seq0035
Sr_rh_Bv05_XX_Sr_rh_Bv05_Contig_10933_Len1599_Cov61_OG5_126554 seq0036
Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_10605_Len690_Cov15_OG5_126554 seq0037
Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_18259_Len648_Cov21_OG5_126554 seq0038
Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_13702_Len678_Cov20_OG5_126554 seq0039
Sr_rh_Ssp1_XX_Contig_1307_Len810_Cov61_OG5_126554 seq0040
Sr_rh_As01_XX_Sr_rh_As01-LKH294_2597_Len693_Cov4_OG5_126554 seq0041
Sr_rh_As03_XX_Sr_rh_As03-LKH313_10378_Len717_Cov12_OG5_126554 seq0042
Sr_rh_As05_XX_Sr_rh_As05-LKH295_19507_Len444_Cov9_OG5_126554 seq0043
Sr_rh_As02_XX_Sr_rh_As02-LKH324_14147_Len456_Cov8_OG5_126554 seq0044
Sr_rh_Emar_XX_Contig_8285_Len723_Cov12_OG5_126554 seq0045
Sr_rh_Hg01_XX_Sr_rh_Hg01-LKH304_7769_Len600_Cov7_OG5_126554 seq0046
Sr_rh_Hind_XX_Contig_2010_Len1647_Cov26_OG5_126554 seq0047
Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_6436_Len489_Cov15_OG5_126554 seq0048
Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_6395_Len597_Cov13_OG5_126554 seq0049
Sr_rh_Sspa_XX_Contig_5747_Len702_Cov21_OG5_126554 seq0050
Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_256_Len708_Cov14_OG5_126554 seq0051
Sr_rh_QjpA_XX_Sr_rh_QjpA-LKH288_9889_Len564_Cov19_OG5_126554 seq0052
Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_13181_Len408_Cov3_OG5_126554 seq0053
Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_6167_Len516_Cov7_OG5_126554 seq0054
Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_190_Len516_Cov4_OG5_126554 seq0055
Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_6601_Len603_Cov10_OG5_126554 seq0056
Sr_rh_Tr01_XX_Sr_rh_Tr01_Contig_5346_Len690_Cov14_OG5_126554 seq0057
Sr_rh_Tr02_XX_Sr_rh_Tr02_Contig_17503_Len567_Cov70_OG5_126554 seq0058
Sr_rh_FF02_XX_Sr_rh_FF02_Contig_5686_Len600_Cov5_OG5_126554 seq0059
Sr_rh_Hhir_XX_Contig_20411_Len594_Cov57_OG5_126554 seq0060
Sr_rh_Pfue_XX_Sr_rh_Pfue_Contig_20190_Len552_Cov3_OG5_126554 seq0061
Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_13699_Len690_Cov51_OG5_126554 seq0062
Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_18519_Len663_Cov18_OG5_126554 seq0063

192
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@ -0,0 +1,192 @@
>Sr_rh_Pfue_XX_Sr_rh_Pfue_Contig_17829_Len879_Cov11_OG5_126554
ISFDASVFKWGELAAHMKVVDGFADEMIAKCRYDLLSKFIISTRELRDILLNFIIAGRDTTAQLLSWCSYELCRNPEIQSKIYDELKTYQTVKMKYLEAVLYESLRLHPSVPNMTRFATRDIQLNNTIRKGDAVLVSNYVLGRLQKWWDNPYKFDPMRFYYKAHEYTNFNIPPRLCLGKHVAMMEAKIGLATILKDYRMELKPGPMKNGCYINFIDRLSE
>Sr_rh_PspA_XX_Sr_rh_PspA-LKH285_9262_Len672_Cov8_OG5_126554
YDLLTKFIISTRELRDILLNFIIAGRDTTAQLLSWCSYELCLNPEIQDKVYEELSTYQSVKMKYLEAVLYEALRLHPSVPNMSRFATRDIQLSDVIRKGDCILVSNYVLGRLHQWWENALQFDPMRFYYKAHEYTNFNVPPRLCLGKHVALMEAKIALATVLKDYRMELKPGPMKNGCFINFIDRSTK
>Sr_rh_Al01_XX_Sr_rh_Al01-LKH192_6022_Len1275_Cov17_OG5_126554
IDLLFDADKSPVLGKGIFVADGNIWKKHRAIASRMFTVRSLRDYMFEVFMDTTDAFIDKCELYTQCVDIYDMYNRLTLEAFTMVAFGVPLGVISFDDGQTRVRTLKKHEQIINEFANTIIQKKRKHFYDIMSLFLVSDAELRDVALNFIVAGRDTTAQLLSWFSYAMSENKGVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAKVDIELPDVIRKGDAIIIPTFAMGRMPWIWKDPLKFNPDRFNFTPSQYPAFNIPPRLCLGKHVALMEAKIAIIKLFKKYKLEAVPSVMKYGFKVKLIPR
>Sr_rh_Hg01_XX_Sr_rh_Hg01-LKH304_11955_Len555_Cov4_OG5_126554
LLSWFSYAMSENKGVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAKVDIELPDVIRKGDAIIIPTFAMGRMPWIWKDPLKFNPDRFNFTPSQYPAFNIPPRLCLGKHVALMEAKIAIIKLFKKYKLEAVPSVMKYGFKVNLIPR
>Sr_rh_HgpA_XX_Sr_rh_HgpA-LKH314_3374_Len948_Cov16_OG5_126554
ISFDDGQTRVRTLKKHVQIINEFANTIIQKKRKHFYDIMSLFLVSDAELRDVALNFIVAGRDTTAQLLSWFSYAMSENKGVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAKVDIELPDVIRKGDAIIIPTFAMGRMPWIWKDPLKFNPDRFNFTPSQYPAFNIPPRLCLGKHVALMEAKIAIIKLFKKYKLEAVPSVMKYGFKVKLIPR
>Sr_rh_Nn01_XX_Sr_rh_Nn01_Contig_13892_Len1674_Cov284_OG5_126554
PYFGHNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTLKKHINIINEFANEFIQKKREHLYDIMWLFLISDEELRDIALNFIIAGRDTTAQLLSWCTYLLSENQHVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDIALPDIIRKGDGIVVPTFAMGRMPWIWKDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLEPVSSVMKNGFKVKLIPRES
>Sr_rh_Nn02_XX_Sr_rh_Nn02_Contig_13025_Len1674_Cov94_OG5_126554
PYFGHNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTLKKHINIINEFANEFIQKKREHLYDIMWLFLISDEELRDIALNFIIAGRDTTAQLLSWCTYLLSENQHVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDIALPDIIRKGDGIVVPTFAMGRMPWIWKDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLEPVSSVMKNGFKVKLIPRES
>Sr_rh_Nn10_XX_Sr_rh_Nn10_Contig_21569_Len1563_Cov139_OG5_126554
PYFGHNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTLKKHINIINEFANEFIQKKREHLYDIMWLFLISDEELRDIALNFIIAGRDTTAQLLSWCTYLLSENQHVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDIALPDIIRKGDGIVVPTFAMGRMPWIWKDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLEPVSSVMKNGFKVKLIPR
>Sr_rh_Emac_XX_Sr_rh_Emac_Contig_11467_Len1551_Cov70_OG5_126554
PYFGHHFIFVVDPALIDLLFDADKRPILGRGIFTSDGLLWKKHRSIASRMFTVRSLRDYMFQVFRDTTDTFMSKCEICANHVDIYDMFHRLTLEAFTQVAFGVSLGVIAFDDAQTKARTLKAHVKVINEFAERIIRSKRKDYYDIMSLFLISDQELRDMALNFIIAGRDTTAQLLSWFSYAMTENADVESKLLAELRQAVADYDAIDCTYLENALLESLRLRPSVPHLVRYAKVDIDLPETIRKGNGIVIPTFAMGRMPWIWKDPLKFDPDRFNYTASQYPAFNIPPRLCLGKHVALLEAKIAVVKLFTKYKLVPMPSVMKNGFKVKLIPRE
>Sr_rh_Al02_XX_Sr_rh_Al02-LKH279_3746_Len555_Cov10_OG5_126554
LMSWFSYAMTENEEVEKKIVEEIRLYVGDYNTINCQYLENAFLESLRMRPVLPHLVRYAKVDIALPHVIRKGDGLIVPSFAMGRMPWIWKDPNTFNPDRFKYTPAQYPAFNIPPRLCLGKHVALLEAKIMIIKLFKKYKLEAVPNIMKNGLKVRLIPRGK
>Sr_rh_As04_XX_Sr_rh_As04-LKH296_1295_Len732_Cov6_OG5_126554
YDLMSLFLISDDELRDVALNFILAGRDTTAQLMSWFSYAMTENEEVEKKIVEEIRLYVGDYNTINCQYLENAFLESLRMRPVLPHLVRYAKVDIALPHVIRKGDGLIVPSFAMGRMPWIWKDPNTFNPDRFKYTPAQYPAFNIPPRLCLGKHVALLEAKIMIIKLFKKYKLEAVPNIMKNGLKVRLIPRGK
>Sr_rh_As01_XX_Sr_rh_As01-LKH294_6033_Len771_Cov5_OG5_126554
YDLMSLFLVSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENEEVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDITLPDVVRKGDGIIIPTYAMGRMPWIWKDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLEALPSVMKNGFKVRLVPRCK
>Sr_rh_As05_XX_Sr_rh_As05-LKH295_5839_Len819_Cov11_OG5_126554
RSSSKKQHFYDLMSLFLVSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENEEVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDITLPDVVRKGDGIIIPTYAMGRMPWIWKDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLDALPSVMKNGFKVRLVPRCK
>Sr_rh_As03_XX_Sr_rh_As03-LKH313_6888_Len702_Cov8_OG5_126554
YDLMSLFLVSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENEEVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDITLPDVVRKGDGIIIPTYAMGRMPWIWKDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLEALPSVMKNGFKVRLVPRCK
>Sr_rh_As02_XX_Sr_rh_As02-LKH324_15814_Len489_Cov16_OG5_126554
MNQFIGNYDMLNCQYLESSFYESLRLQPSLPHLVRYAKVDIPLPDVIRKGDGVIVPMYAMGRMPWLWKNPDKFDPERFNYTPAEYPAFNIPPRVCLGKHVALMEAKIAVIKLLKKFKLEALPTVMKNGFKVKLIPRCK
>Sr_rh_Ts02_XX_Sr_rh_Ts02-LKH320_6145_Len708_Cov5_OG5_126554
YDLMSLFLITDDELRDIALNFIIAGRDTTAQLLSWFSYCITDNKQIEENIMNEINQYIGDYNVIQCEYLESSFLETLRLRPSVPHLVRYAKIDIKLPDIIRKGDGIVIPTYAMGRMPWIWNDPLKFNPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLQPLPSIMRNGFKVKLIPRDSK
>Sr_rh_Calb_XX_Contig_7745_Len1683_Cov38_OG5_126554
PLIGHNFIFMVSPKLIDLLFDSNKLPILGHGIFNADGQLWKKHRSIASRMFTVRSLRDYMFNVFVDTTDKWILKSEILKNFVDIYNMNLRLTMEAFTKVAFGVDLGTIAMDDGITKLKSLKKHSHILNDFAKKVIDDRKSYDLLSLFLVNVSELRDVCINFIVAGRDTTAQLLSWFMYELSNPKIEEKIMEEINEYIGEYKQIECEYLENCLLETLRLRPSVPHLVRYAKCDIELPGHIIRKGDGIVIPTYAMGRMPWIWKDPLKFNPDRFKHPPSKYPAFNIPPRLCLGKHVALLEAKIAIVKLFKKYKLVKLPSVMKYGYKVKLEPRNQ
>Sr_rh_RspA_XX_Sr_rh_RspA-LKH290_4671_Len1062_Cov25_OG5_126554
FNDTTDDFIAKCEICEMSVNIYDMFHRLTLEAFTMVAFGVPLGVISFDEGRTKWRTLKKHLKIINEFASNIIHKKRQQFYDLISLFMITDEELRDIALNFIIAGRDTTAQLLSWFSYLVTENESVESKIMNEINECVADYNMVKCEYLENAFLETLRLRPSVPHLVRYAKTDIKLPHIIRKGDGIVIPTFAMGRMPWIWSNPLEFNPDRFKFTPAEYPAFNLPPRLCLGKHVALLEAKIAIIKLFKKYKLEAVPSVMKYGFNVKLVPRKQET
>Sr_rh_FF02_XX_Sr_rh_FF02_Contig_1649_Len957_Cov10_OG5_126554
NMYNRLTLEAFTQVAFGVPLGCISFDRGQSKLRELRKHLKVVNEFVSKVIVERKFDLLSLFLTSDKELRDVAMNFIVAGRDTTAQLLSWFSYLISENQECEAKVTKEIMEHVPTYEMVKCQYLENALLETLRLRPSVPHLVRFAKVDILLPHVIRKGDGIVVPTYAMGRMPSLWKDPLKFDPSRFEYTPSEYPAFNIPPRLCLGKHVALLESKIAIIRLFRKFKLEPLSSIMKNGFRVKLVPR
>Sr_rh_Hind_XX_Contig_12080_Len1260_Cov53_OG5_126554
KPVFGVGILSTDGKLWKKYRSIGSRIFTVRSLRDFMYEVFDSTSSALVKKSLIQEQFVDLYNMFNRLTLEAFTHIAFGVSMKTIAFDRSQWDFKELKKHAGILNDKIGLLVRQRKEQYKDLLTLYFATDLELRDLIMNFVVAGRDTTAQLCSWFSYEISEHAHVDARILEEIHTYVGTYQMVKLKYMESCFLETLRLHPSVPHLVRFALVDIKLPHVIRKGDGVVVPVYAMGRMPWLWPKPLVFDPMRFEYTPALFPAFNIPPRLCLGKHLALLEAKVVMVKILRKYRIVARESIMKDGFYARLQPRAQQQQ
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_20076_Len1179_Cov40_OG5_126554
MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19982_Len1182_Cov79_OG5_126554
MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_20382_Len1167_Cov94_OG5_126554
MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19888_Len1155_Cov80_OG5_126554
MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19044_Len1188_Cov38_OG5_126554
MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>Sr_rh_Pina_XX_Contig_8772_Len858_Cov33_OG5_126554
PFFGHNFIFLCDPKLIDLIFDAEKKPMLGHGIFLSDGARWKKQRSIASRMFTVRSLRDYMFEVFVDTSNTFIDKCLIQSEEIDIYDMFNRLTLEAFTEVAFGVSLNIMSFDRGQ
>Sr_rh_Slin_XX_Contig_3275_Len1587_Cov14_OG5_126554
PFFGHNFIFLCDPKLIDFVFDANKKPLLGHGIFVSDGAKWKKHRSIASHMFTVRSLREYMFEVFVDTSNTFLDKCLIQSKEIDIYNMFNRLTLEAFTKVAFGVSLNIISFDRGQTAWRELHIHTAIIEQQISEVIQRNVNYDLLSLFLASENELRDVAMNFIIAGRDTTAQLLSWFSYLLTNPKVEQMIVDEINANIGDYEMVKCQYLENAFLETLRLHPSVPHLVRYAKTDIPLLNIIRKGDCIIIPTYAMGRMPWLWNNALTFDPSRFEYSPAQYPAFNIPPRLCLGKHVALLEAKIVIIKLLRKYRIVAIPSVMKNGFKVRLELR
>Sr_rh_FF02_XX_Sr_rh_FF02_Contig_3920_Len636_Cov5_OG5_126554
ITMNFIIAGKDTTAQLLSWFFYVITHNRSDEVISNILNEFDAQSNGYEKMKLQYLEYCLLETLRLFPSVPHLIRFAKSDIFRVDYTIRKGDGIVIPLYAMGRMPWIWENPDEFDPLRFQFLPSEYPAFNIPPRLCLGKHVALMEAKIAVIKLLKKYRFVTQESPMKNGYKVKLIPK
>Sr_rh_PspA_XX_Sr_rh_PspA-LKH285_926_Len1191_Cov12_OG5_126554
LPILGRGIIASDGKIWKRHRKVASRMFTLSSLRDYMFEVFNSTTDTLMDKMLIHKDHVDLYDMYNRLTLEAFTEVAFGVKLGVISFDRGASKFKELLFHEKTINNMVWDLVHKCKERLCDLLSLFIITDVELRDITINFVIAGRDTTAQLLSWFSYLITWPQVEKKVLKEIKEVFPDYGKIKLEYLENAFLETLRMHPSVPHLVREAKVDIHLPHIIRKGDGVIVPTYAMGRLPWLWEKPEEMNPDRFQFTPSEYPAFNIPPRLCLGKHVSLMEAKIQIVKLLPKYKFEPLPSAMKNGFKVKLVPRDTQ
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_3536_Len591_Cov9_OG5_126554
LRDVAMNFIIAGRDTTAQLLSWFMYLFTNKEIEKPILNEINSIINYIDVKLKYLENCFFETLRLRPAVPHLLRFAKTDIQLKYVIRKGDGICIPTFAMNRMPWIWDNPFKFDPNRFDQSPSKYVAFNIPPRLCLGKHVALLEAKLLVLELLTRFKIEPVLSAMRNGFKVYFHPR
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_14775_Len321_Cov15_OG5_126554
YVIRKGDGICIPTFAMNRMPWIWDNPFKFDPNRFDQSPSKYVAFNIPPRLCLGKHVALLEAKLLVLELLTRFKIEPVLSAMRNGFKVYFHPR
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_8241_Len441_Cov6_OG5_126554
IKLNYLENSFLETLRLRPSVPHLVRKAVVDIKIPHIIRKDDTILVPTYAMGRMEWIWKDALKFDPTRFEYSPSKYPAFNIKPRLCLGKHVALLEAKIAIVKLFKKYKFIPIESLMKNGFRVKLIKRQT
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_5955_Len525_Cov17_OG5_126554
NQHVEDKIMDEINQHINYNTIKLNYLENSFLETLRLRPSVPHLVRKAVVDIKIPHIIRKDDTILVPTYAMGRMEWIWKDALKFDPTRFEYSPSKYPAFNIKPRLCLGKHVALLEAKIAIVKLFKKYKFIPIESLMKNGFRVKLIKRQTQF
>Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_6707_Len579_Cov20_OG5_126554
RVRAAQLLSWFLYEITENNEILSNINNEINEYINYDNIKLVYLENCFLETLRLRPSVPHLVRQANVDINIPYTIRKDDTIIVPTYAMGRMDYIWENPLKFDPNRFKHSPSKYPAFNIKPRLCLGKHVALLEAKIAIAKLFQKYKFEPIKSVMKNGFKVKVVPNIFK
>Sr_rh_Tr01_XX_Sr_rh_Tr01_Contig_9807_Len483_Cov16_OG5_126554
SINAEYGNYDNIKLIYLENCFLETLRLRPSVPHLVRQANVDIPIPYTIRKDDTIIVPTYAMGRMDYIWENALTFDPNRFKYSPSKYPAFNIKPRLCLGKHVALLEAKIAIAKLFKKYKFEPIKSVMKNGFKVKVVPIE
>Sr_rh_Bv04_XX_Sr_rh_Bv04_Contig_12687_Len1599_Cov64_OG5_126554
PFIGHNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKDYMFEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYGELKKHEEIINKKIQDIISKRKEQYDIISIFLISDKELRDICANFILAGRDTTGQLLSWFCYEICENKHIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRVAKTDILIPHVIRKGDTIIVPCYAMGRMPTIWKEPLKFDPLRFNFPPCKYPAFNIPPRLCLGKHVAIMEAKIAIVKLFRKYELIPDTSMMKTGFRVRLKSR
>Sr_rh_Bv05_XX_Sr_rh_Bv05_Contig_10933_Len1599_Cov61_OG5_126554
PFIGHNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKDYMFEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYGELKKHEEIINKKIQDIISKRKEQYDIISIFLISDKELRDICANFILAGRDTTGQLLSWFCYEICENKHIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRVAKTDILIPHVIRKGDTIIVPCYAMGRMPTIWKEPLKFDPLRFNFPPCKYPAFNIPPRLCLGKHVAIMEAKIAIVKLFRKYELIPDTSMMKTGFRVRLKSR
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_10605_Len690_Cov15_OG5_126554
KQVQYDLLSLFLMSIKELRDISMNFIIAGRDTTAQTLSWFTYELCPHVYDQIMKEIDQVIGTYDLIKLKYLENALLETLRLHPAVPHLLRFATRDFRLPHIIRKGDGIVCAAYLMGHISHLWDDPERFDPTRFEYDPSYFPAFNIAPRICLGKHVALLEAKIAAIKLFKKFKIIPVPAPMKNGFKVTLHNIETD
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_18259_Len648_Cov21_OG5_126554
YDLLSLFLMSIKELRDISMNFIIAGRDTTAQTLSWFIYELSPHVQDQIMNEINHVIGDYHLIKLKYLENALLETLRLHPAVPHLLRFATRDFRIPHIIRKGDGIVCAAYIMGHVPELWNNPHQFDPTRFEYDPSYFPAFNIAPRLCLGKHVALLEAKIAAVKLLKKFKIIPVPAPMKNGFKVTLECRN
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_13702_Len678_Cov20_OG5_126554
IRYDLLSLFLITEKELRDIAMNFIIAGRDTTAQTLSWFIYELTSPDVEENILKEIDSIGTYENIKFKYLENALLETLRMHPAVPHLVRYATRDILLRNIVRKGDGIVVGAYVMGHIPWLWPDPERFDPTRFEYDPCYFPVFNVAPRLCLGKHVALLEAKIAAVKLLKKYRIEAIKAPMRYGFKVKLHPRL
>Sr_rh_Ssp1_XX_Contig_1307_Len810_Cov61_OG5_126554
PFIGHIKNFIFIVDPKIIDLLFDKRPMFGDGIFSSDGNIWKKHRALASRMFTLRSLRDYMFKSFCSTTDEFINKLSVDIYDMYNRLTLEAFTYVAFGTNLGAISQAPEELEFTSFDKICKRFFDPIKM
>Sr_rh_As01_XX_Sr_rh_As01-LKH294_2597_Len693_Cov4_OG5_126554
YDLLSMFIITDQELRDITFSFIIAGKDTTAQMLSWFMYHIHNLQHIFDGVRKEIKEVFGEYDKVKCSFIECCLKESLRLYPSVPHLVRTAVKDMKLPYTLRKGDELFVSTFAMGRMPWIWKDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAG
>Sr_rh_As03_XX_Sr_rh_As03-LKH313_10378_Len717_Cov12_OG5_126554
YDLLSMFIITDQELRDITFSFIIAGKDTTAQMLSWFMYHIHNLQHIFDGVRKEIKEVFGEYDKVKCSFIECCLKESLRLYPSVPHLVRTAVKDMKLPYTLRKGDELFVSTFAMGRMPWIWKDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAGFQAHLQK
>Sr_rh_As05_XX_Sr_rh_As05-LKH295_19507_Len444_Cov9_OG5_126554
KVKCSFIECCLKESLRLYPSVPHLVRTAVKDMKLPYTLRKGDELFVSTFAMGRMPWIWKDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAGFQAHLQK
>Sr_rh_As02_XX_Sr_rh_As02-LKH324_14147_Len456_Cov8_OG5_126554
EYEKVKCRYIECCLKESLRLYPSVPHLVRTAVKDIKLPYTVRPGDEVFVSAYAMGRMPWVWEDPLEFKPERFQPDPSMYPAFNIAPRICLGRHVALLEGKIAIIKLFTKYKSITAVQSPMGAGFQAHLQK
>Sr_rh_Emar_XX_Contig_8285_Len723_Cov12_OG5_126554
FDLISMFIITDEELRDITFSFIIAGKDTTAQMLSWLMYHLHKLQQVMDNIRAEIRRVFGDYEKVQCQYIECCLKESLRLYPSVPYLVRTPVKDIATHYVIRKGDEVMVAAYSMARMPWLWDDPLAFKPERFMYDPSLYPAFNIAPRICLGRHVALMEGKIAVIKLFSKYKNITAVKSPMETGFKAHLNVR
>Sr_rh_Hg01_XX_Sr_rh_Hg01-LKH304_7769_Len600_Cov7_OG5_126554
INFIIAGKDTTAQMLSWFFYHINNLYDIERKMRDEIEEIFGTYEKVKCDYIECCLNETLRLYPSVPHLVRTAVKDIRTPYVIRKGDEIFISAWSMGRAPWIWDEPLQFKPERFMIDPSRFPAFNVAPRICLGKHVALLEGKLALIKIFKKYKHISAVPGPMKVGFKVRMRKE
>Sr_rh_Hind_XX_Contig_2010_Len1647_Cov26_OG5_126554
PFVGHHRIFITNPKIAKQLFDAIKRELLGDGIFATNGQRWREHRAIASHMFTVRSLRDYMFDVFCYTTDQLLDKLEMTVDDVNIYDMYNRLTFEAFTKIAFGVDVGEIRFDRAELRKKEMRSHIDWIEDYIYKVIANRRAYYYDLLSMFLISDKELRDITVNFIIAGKDTTAQMLSWFTYHLHKLIEVENKIRAEITKVFGNYKQVQCTYLECCFLESLRLYPSVPHLARAAVVDIETYYTIRAGDEVLICPLSMSRLEWIWPNAEQFIPERFAFDPWVYPAFNIPPRLCLGKHVALLEGKIALIKLFSRFSSIVRSDAPMPHGYKVHLRKRVEP
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_6436_Len489_Cov15_OG5_126554
IKNIFGKYEDVKCNYIEACLYESLRLYPSVPNLVRTAIEDIKLPHTIRKGEEIVISTYSMGRSKYIWEDPMKFNPERFIYEPWVYPAFNLKPRLCLGKHVAILEGKIAIIKLFSQFQSIQAFQSAMKNGLKVVLK
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_6395_Len597_Cov13_OG5_126554
IAGRDTTSQMLSWFMFHLTKNDGMDLIEKNIRNEIKNIFGKYEDVKCNYIEACLYESLRLYPSVPNLVRTAIEDIKLPHTIRKGEEIVISTYSMGRSKYIWEDPMKFNPERFIYEPWVYPAFNLKPRLCLGKHVAILEGKIAIIKLFSQFQSIQAFQSAMKNGLKVVLK
>Sr_rh_Sspa_XX_Contig_5747_Len702_Cov21_OG5_126554
YDLLSMFIISDRQLRDITMNFIIAGRDTTSQMLSWFMYHLTNSDMKTIESNIRNEIKTIFGTYDDVKCNYIEACLLESLRLYPSVPNLVRTAIEDIQTPYTIRKNDEIMISTYSIGRSKYIWKDPLTFNPERFLYDPSVYPAFNLKPRLCLGKHVALMEGKIAIIKLFNKFKTIKCVPSAMKNGWKVTLE
>Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_256_Len708_Cov14_OG5_126554
YDLLSMFIISDDELRDITMNFIIAGRDTTSHMLSWFLFHLTQNDGMSDIEKKIRNEIDNIFGSYEKVKCEYIEACLYETLRLYPSVPHLLRTAVEDIKTKYTIRKGDDIVISAYAMGRSKYIWDKPLKFDANRFIYDASVYPAFNIQPRLCLGKHVAILEGKIALIKLFSRFKTIKCLPSAMKNGWKLDLK
>Sr_rh_QjpA_XX_Sr_rh_QjpA-LKH288_9889_Len564_Cov19_OG5_126554
MLSWFYFHLTQNDGMSEIEKNIRNEIDNIFGSYENVKCEYIEACLYETLRLYPSVPHLLRTAVEDIKTKYTIRKGDDIVISAYAMGRSKYIWDDPLKFDANRFIYDASVYPAFNIQPRLCLGKHVAILEGKIALIKLFTKFKNIKCLPSAMKNGWKLDLK
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_13181_Len408_Cov3_OG5_126554
VECKYIECCLKETLRLYPSVPHFSREMVKDFKVKIYTFYKGDEIIITTFPLGRLPWLWENADKFIPERFMYDNSQYPAFNIAPRTCLGKNVALLEGKIAVVAMFTNFKSFQAVPAAM
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_6167_Len516_Cov7_OG5_126554
IVENIRKEIIQKFGDYDKVECKYIECCLKETLRLYPSVPHFSREMVKDFKVKIYTFYKGDEIIITTFPLGRLPWLWGNADKFIPERFMYDNSQYPAFNIAPRTCLGKNVALLEGKIAVVAMFTNFKSFQAVPAAMDGGFKIHIH
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_190_Len516_Cov4_OG5_126554
IVENIRKEIIEKFGEYNKVECKYIECCLKETLRLYPSVTHFSREMVKDFKLKIYTFYKGDEIVVTTFAMGRLPWLWKNAEKFVPERFMYDQSKYVAFNISPRTCLGKNVALLEGKIAVIAMFSQFKSFRTVPAAMDGGFNIYVE
>Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_6601_Len603_Cov10_OG5_126554
IAGRDTTSQMISWFMFHLLNQSNKRNIIIDNIKNEIISVFGEYDKVQCVYLDACLKETLRLYPSVPHFVRQMVTDLTLNIYTFEKGDEIVVFTIALGKLPWLWENADEFIPERFIYDAEIWPAFNIAPRTCLGKNVALMEGKMALIAMFSNFKNFKTVAAPFRNGFKIFLD
>Sr_rh_Tr01_XX_Sr_rh_Tr01_Contig_5346_Len690_Cov14_OG5_126554
YDLLSIFIINDKFLRDVTMNFIIAGRDTTSQMLSWFIFHLLNEDEKRNVIINNIKKEIVDVFGEYDKVKCSYIEACLKETLRLYPSVPHFVREMVSDLTLNIYTFHKGDEVIVCTIALGKLPWLWENANEFIPERFIYDAHIWPAFNIAPRTCLGKNVALLEGKTAIIAMFSNFKKMTTVPAPFRNGFNIYLK
>Sr_rh_Tr02_XX_Sr_rh_Tr02_Contig_17503_Len567_Cov70_OG5_126554
DITMNFIIAGRDTTSQMLSWFMFHLYNEDDKRNVIINNIKNEIISIFGEYNKVKCDYIEACLKETLRMYPSVPHFVREMVTDMKINIYIFEKGNEIIICTIALGKLPWLWDNANEFIPERFIYDNHIYPAFNILPRTCLGKNVALLEGKIAIISMFSNFNKFKAVP
>Sr_rh_FF02_XX_Sr_rh_FF02_Contig_5686_Len600_Cov5_OG5_126554
LLSWFLYLVYENGKKFIEEKILKEIEEKCPNFSELECEYLESALLETLRLYPSVHHLERTAVEDIKLSLEQYIIREGDHIMVEAYALGRATWIWGDDALEFNPLRFYYDPSQYLAFNIAPRICLGKHVALLEAKLVVIKLLRHFTIQPVKSAMKNGYKIILKRR
>Sr_rh_Hhir_XX_Contig_20411_Len594_Cov57_OG5_126554
QNVVFISDPVQTKYIYDRRPMFGHGIFVSDGHEWRKQRKIASRLFTMRNLKHYMFENFETCSKRLVNKLPIDLFDMFNRLTMDGFVASAFGVYSDTIEQAPHDTRFEAFDGGCDRFIARPFLETLKHAKRFCSIRERIESGE
>Sr_rh_Pfue_XX_Sr_rh_Pfue_Contig_20190_Len552_Cov3_OG5_126554
ERIESHDLLSLFMFTEEELQDLCLNFIIAGRDTTAENISWLMYELSKNPHVLQLVIDEINTLTYDNVELTYLESALLETQRLHPSVPTLNRQAKRDIKLPFTVKKGDIYMVHNYAMGRAPWIWEDPLRFDPTRFSYEPQVFPQFNIAPRMCLGKHVAMME
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_13699_Len690_Cov51_OG5_126554
YNLLSLFLNYTLDELRDICINFIIAGRDTTAETLTWLCVELSSHPDIVDQIRNEINQVTYESLEMKYTESALLETQRLHPSVPSLIRFAFQDIVLPYTIRKGDAVNVFNYAMGRSPWIWENPLQFHPPRFQFHPSVYPAFNIGQRLCLGRHVALMHAKVVLYHLFKHFNFKAVPAPLKNGFQVHLQPLHPTQN
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_18519_Len663_Cov18_OG5_126554
DLLTLYAITRSELQDVCVNFIIAGRDTTALNLCWLFILLAQNPHCLQQLKDEIRSISFKTLDMTYTESCILEAQRIYPSVPSLTRVAVTDIPLPYVIHKDEIVVISTFAMNRSPKIWENPLQFDPSRFEHEPHIYPSFNIGQRLCLGRHVALLVAKVVLYHFFQNFDFQIDMAPLTNGLPMRIIPLSSSV

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PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/Seqs.Orig.fas.FIXED Normal file
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>Sr_rh_Pfue_XX_Sr_rh_Pfue_Contig_17829_Len879_Cov11_OG5_126554
ISFDASVFKWGELAAHMKVVDGFADEMIAKCRYDLLSKFIISTRELRDILLNFIIAGRDTTAQLLSWCSYELCRNPEIQSKIYDELKTYQTVKMKYLEAVLYESLRLHPSVPNMTRFATRDIQLNNTIRKGDAVLVSNYVLGRLQKWWDNPYKFDPMRFYYKAHEYTNFNIPPRLCLGKHVAMMEAKIGLATILKDYRMELKPGPMKNGCYINFIDRLSE
>Sr_rh_PspA_XX_Sr_rh_PspA-LKH285_9262_Len672_Cov8_OG5_126554
YDLLTKFIISTRELRDILLNFIIAGRDTTAQLLSWCSYELCLNPEIQDKVYEELSTYQSVKMKYLEAVLYEALRLHPSVPNMSRFATRDIQLSDVIRKGDCILVSNYVLGRLHQWWENALQFDPMRFYYKAHEYTNFNVPPRLCLGKHVALMEAKIALATVLKDYRMELKPGPMKNGCFINFIDRSTK
>Sr_rh_Al01_XX_Sr_rh_Al01-LKH192_6022_Len1275_Cov17_OG5_126554
IDLLFDADKSPVLGKGIFVADGNIWKKHRAIASRMFTVRSLRDYMFEVFMDTTDAFIDKCELYTQCVDIYDMYNRLTLEAFTMVAFGVPLGVISFDDGQTRVRTLKKHEQIINEFANTIIQKKRKHFYDIMSLFLVSDAELRDVALNFIVAGRDTTAQLLSWFSYAMSENKGVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAKVDIELPDVIRKGDAIIIPTFAMGRMPWIWKDPLKFNPDRFNFTPSQYPAFNIPPRLCLGKHVALMEAKIAIIKLFKKYKLEAVPSVMKYGFKVKLIPR
>Sr_rh_Hg01_XX_Sr_rh_Hg01-LKH304_11955_Len555_Cov4_OG5_126554
LLSWFSYAMSENKGVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAKVDIELPDVIRKGDAIIIPTFAMGRMPWIWKDPLKFNPDRFNFTPSQYPAFNIPPRLCLGKHVALMEAKIAIIKLFKKYKLEAVPSVMKYGFKVNLIPR
>Sr_rh_HgpA_XX_Sr_rh_HgpA-LKH314_3374_Len948_Cov16_OG5_126554
ISFDDGQTRVRTLKKHVQIINEFANTIIQKKRKHFYDIMSLFLVSDAELRDVALNFIVAGRDTTAQLLSWFSYAMSENKGVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAKVDIELPDVIRKGDAIIIPTFAMGRMPWIWKDPLKFNPDRFNFTPSQYPAFNIPPRLCLGKHVALMEAKIAIIKLFKKYKLEAVPSVMKYGFKVKLIPR
>Sr_rh_Nn01_XX_Sr_rh_Nn01_Contig_13892_Len1674_Cov284_OG5_126554
PYFGHNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTLKKHINIINEFANEFIQKKREHLYDIMWLFLISDEELRDIALNFIIAGRDTTAQLLSWCTYLLSENQHVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDIALPDIIRKGDGIVVPTFAMGRMPWIWKDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLEPVSSVMKNGFKVKLIPRES
>Sr_rh_Nn02_XX_Sr_rh_Nn02_Contig_13025_Len1674_Cov94_OG5_126554
PYFGHNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTLKKHINIINEFANEFIQKKREHLYDIMWLFLISDEELRDIALNFIIAGRDTTAQLLSWCTYLLSENQHVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDIALPDIIRKGDGIVVPTFAMGRMPWIWKDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLEPVSSVMKNGFKVKLIPRES
>Sr_rh_Nn10_XX_Sr_rh_Nn10_Contig_21569_Len1563_Cov139_OG5_126554
PYFGHNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYMFEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTLKKHINIINEFANEFIQKKREHLYDIMWLFLISDEELRDIALNFIIAGRDTTAQLLSWCTYLLSENQHVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDIALPDIIRKGDGIVVPTFAMGRMPWIWKDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLEPVSSVMKNGFKVKLIPR
>Sr_rh_Emac_XX_Sr_rh_Emac_Contig_11467_Len1551_Cov70_OG5_126554
PYFGHHFIFVVDPALIDLLFDADKRPILGRGIFTSDGLLWKKHRSIASRMFTVRSLRDYMFQVFRDTTDTFMSKCEICANHVDIYDMFHRLTLEAFTQVAFGVSLGVIAFDDAQTKARTLKAHVKVINEFAERIIRSKRKDYYDIMSLFLISDQELRDMALNFIIAGRDTTAQLLSWFSYAMTENADVESKLLAELRQAVADYDAIDCTYLENALLESLRLRPSVPHLVRYAKVDIDLPETIRKGNGIVIPTFAMGRMPWIWKDPLKFDPDRFNYTASQYPAFNIPPRLCLGKHVALLEAKIAVVKLFTKYKLVPMPSVMKNGFKVKLIPRE
>Sr_rh_Al02_XX_Sr_rh_Al02-LKH279_3746_Len555_Cov10_OG5_126554
LMSWFSYAMTENEEVEKKIVEEIRLYVGDYNTINCQYLENAFLESLRMRPVLPHLVRYAKVDIALPHVIRKGDGLIVPSFAMGRMPWIWKDPNTFNPDRFKYTPAQYPAFNIPPRLCLGKHVALLEAKIMIIKLFKKYKLEAVPNIMKNGLKVRLIPRGK
>Sr_rh_As04_XX_Sr_rh_As04-LKH296_1295_Len732_Cov6_OG5_126554
YDLMSLFLISDDELRDVALNFILAGRDTTAQLMSWFSYAMTENEEVEKKIVEEIRLYVGDYNTINCQYLENAFLESLRMRPVLPHLVRYAKVDIALPHVIRKGDGLIVPSFAMGRMPWIWKDPNTFNPDRFKYTPAQYPAFNIPPRLCLGKHVALLEAKIMIIKLFKKYKLEAVPNIMKNGLKVRLIPRGK
>Sr_rh_As01_XX_Sr_rh_As01-LKH294_6033_Len771_Cov5_OG5_126554
YDLMSLFLVSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENEEVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDITLPDVVRKGDGIIIPTYAMGRMPWIWKDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLEALPSVMKNGFKVRLVPRCK
>Sr_rh_As05_XX_Sr_rh_As05-LKH295_5839_Len819_Cov11_OG5_126554
RSSSKKQHFYDLMSLFLVSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENEEVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDITLPDVVRKGDGIIIPTYAMGRMPWIWKDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLDALPSVMKNGFKVRLVPRCK
>Sr_rh_As03_XX_Sr_rh_As03-LKH313_6888_Len702_Cov8_OG5_126554
YDLMSLFLVSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENEEVEGKIMQEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDITLPDVVRKGDGIIIPTYAMGRMPWIWKDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLEALPSVMKNGFKVRLVPRCK
>Sr_rh_As02_XX_Sr_rh_As02-LKH324_15814_Len489_Cov16_OG5_126554
MNQFIGNYDMLNCQYLESSFYESLRLQPSLPHLVRYAKVDIPLPDVIRKGDGVIVPMYAMGRMPWLWKNPDKFDPERFNYTPAEYPAFNIPPRVCLGKHVALMEAKIAVIKLLKKFKLEALPTVMKNGFKVKLIPRCK
>Sr_rh_Ts02_XX_Sr_rh_Ts02-LKH320_6145_Len708_Cov5_OG5_126554
YDLMSLFLITDDELRDIALNFIIAGRDTTAQLLSWFSYCITDNKQIEENIMNEINQYIGDYNVIQCEYLESSFLETLRLRPSVPHLVRYAKIDIKLPDIIRKGDGIVIPTYAMGRMPWIWNDPLKFNPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLQPLPSIMRNGFKVKLIPRDSK
>Sr_rh_Calb_XX_Contig_7745_Len1683_Cov38_OG5_126554
PLIGHNFIFMVSPKLIDLLFDSNKLPILGHGIFNADGQLWKKHRSIASRMFTVRSLRDYMFNVFVDTTDKWILKSEILKNFVDIYNMNLRLTMEAFTKVAFGVDLGTIAMDDGITKLKSLKKHSHILNDFAKKVIDDRKSYDLLSLFLVNVSELRDVCINFIVAGRDTTAQLLSWFMYELSNPKIEEKIMEEINEYIGEYKQIECEYLENCLLETLRLRPSVPHLVRYAKCDIELPGHIIRKGDGIVIPTYAMGRMPWIWKDPLKFNPDRFKHPPSKYPAFNIPPRLCLGKHVALLEAKIAIVKLFKKYKLVKLPSVMKYGYKVKLEPRNQ
>Sr_rh_RspA_XX_Sr_rh_RspA-LKH290_4671_Len1062_Cov25_OG5_126554
FNDTTDDFIAKCEICEMSVNIYDMFHRLTLEAFTMVAFGVPLGVISFDEGRTKWRTLKKHLKIINEFASNIIHKKRQQFYDLISLFMITDEELRDIALNFIIAGRDTTAQLLSWFSYLVTENESVESKIMNEINECVADYNMVKCEYLENAFLETLRLRPSVPHLVRYAKTDIKLPHIIRKGDGIVIPTFAMGRMPWIWSNPLEFNPDRFKFTPAEYPAFNLPPRLCLGKHVALLEAKIAIIKLFKKYKLEAVPSVMKYGFNVKLVPRKQET
>Sr_rh_FF02_XX_Sr_rh_FF02_Contig_1649_Len957_Cov10_OG5_126554
NMYNRLTLEAFTQVAFGVPLGCISFDRGQSKLRELRKHLKVVNEFVSKVIVERKFDLLSLFLTSDKELRDVAMNFIVAGRDTTAQLLSWFSYLISENQECEAKVTKEIMEHVPTYEMVKCQYLENALLETLRLRPSVPHLVRFAKVDILLPHVIRKGDGIVVPTYAMGRMPSLWKDPLKFDPSRFEYTPSEYPAFNIPPRLCLGKHVALLESKIAIIRLFRKFKLEPLSSIMKNGFRVKLVPR
>Sr_rh_Hind_XX_Contig_12080_Len1260_Cov53_OG5_126554
KPVFGVGILSTDGKLWKKYRSIGSRIFTVRSLRDFMYEVFDSTSSALVKKSLIQEQFVDLYNMFNRLTLEAFTHIAFGVSMKTIAFDRSQWDFKELKKHAGILNDKIGLLVRQRKEQYKDLLTLYFATDLELRDLIMNFVVAGRDTTAQLCSWFSYEISEHAHVDARILEEIHTYVGTYQMVKLKYMESCFLETLRLHPSVPHLVRFALVDIKLPHVIRKGDGVVVPVYAMGRMPWLWPKPLVFDPMRFEYTPALFPAFNIPPRLCLGKHLALLEAKVVMVKILRKYRIVARESIMKDGFYARLQPRAQQQQ
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_20076_Len1179_Cov40_OG5_126554
MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19982_Len1182_Cov79_OG5_126554
MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_20382_Len1167_Cov94_OG5_126554
MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19888_Len1155_Cov80_OG5_126554
MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19044_Len1188_Cov38_OG5_126554
MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAGKDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>Sr_rh_Pina_XX_Contig_8772_Len858_Cov33_OG5_126554
PFFGHNFIFLCDPKLIDLIFDAEKKPMLGHGIFLSDGARWKKQRSIASRMFTVRSLRDYMFEVFVDTSNTFIDKCLIQSEEIDIYDMFNRLTLEAFTEVAFGVSLNIMSFDRGQ
>Sr_rh_Slin_XX_Contig_3275_Len1587_Cov14_OG5_126554
PFFGHNFIFLCDPKLIDFVFDANKKPLLGHGIFVSDGAKWKKHRSIASHMFTVRSLREYMFEVFVDTSNTFLDKCLIQSKEIDIYNMFNRLTLEAFTKVAFGVSLNIISFDRGQTAWRELHIHTAIIEQQISEVIQRNVNYDLLSLFLASENELRDVAMNFIIAGRDTTAQLLSWFSYLLTNPKVEQMIVDEINANIGDYEMVKCQYLENAFLETLRLHPSVPHLVRYAKTDIPLLNIIRKGDCIIIPTYAMGRMPWLWNNALTFDPSRFEYSPAQYPAFNIPPRLCLGKHVALLEAKIVIIKLLRKYRIVAIPSVMKNGFKVRLELR
>Sr_rh_FF02_XX_Sr_rh_FF02_Contig_3920_Len636_Cov5_OG5_126554
ITMNFIIAGKDTTAQLLSWFFYVITHNRSDEVISNILNEFDAQSNGYEKMKLQYLEYCLLETLRLFPSVPHLIRFAKSDIFRVDYTIRKGDGIVIPLYAMGRMPWIWENPDEFDPLRFQFLPSEYPAFNIPPRLCLGKHVALMEAKIAVIKLLKKYRFVTQESPMKNGYKVKLIPK
>Sr_rh_PspA_XX_Sr_rh_PspA-LKH285_926_Len1191_Cov12_OG5_126554
LPILGRGIIASDGKIWKRHRKVASRMFTLSSLRDYMFEVFNSTTDTLMDKMLIHKDHVDLYDMYNRLTLEAFTEVAFGVKLGVISFDRGASKFKELLFHEKTINNMVWDLVHKCKERLCDLLSLFIITDVELRDITINFVIAGRDTTAQLLSWFSYLITWPQVEKKVLKEIKEVFPDYGKIKLEYLENAFLETLRMHPSVPHLVREAKVDIHLPHIIRKGDGVIVPTYAMGRLPWLWEKPEEMNPDRFQFTPSEYPAFNIPPRLCLGKHVSLMEAKIQIVKLLPKYKFEPLPSAMKNGFKVKLVPRDTQ
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_3536_Len591_Cov9_OG5_126554
LRDVAMNFIIAGRDTTAQLLSWFMYLFTNKEIEKPILNEINSIINYIDVKLKYLENCFFETLRLRPAVPHLLRFAKTDIQLKYVIRKGDGICIPTFAMNRMPWIWDNPFKFDPNRFDQSPSKYVAFNIPPRLCLGKHVALLEAKLLVLELLTRFKIEPVLSAMRNGFKVYFHPR
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_14775_Len321_Cov15_OG5_126554
YVIRKGDGICIPTFAMNRMPWIWDNPFKFDPNRFDQSPSKYVAFNIPPRLCLGKHVALLEAKLLVLELLTRFKIEPVLSAMRNGFKVYFHPR
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_8241_Len441_Cov6_OG5_126554
IKLNYLENSFLETLRLRPSVPHLVRKAVVDIKIPHIIRKDDTILVPTYAMGRMEWIWKDALKFDPTRFEYSPSKYPAFNIKPRLCLGKHVALLEAKIAIVKLFKKYKFIPIESLMKNGFRVKLIKRQT
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_5955_Len525_Cov17_OG5_126554
NQHVEDKIMDEINQHINYNTIKLNYLENSFLETLRLRPSVPHLVRKAVVDIKIPHIIRKDDTILVPTYAMGRMEWIWKDALKFDPTRFEYSPSKYPAFNIKPRLCLGKHVALLEAKIAIVKLFKKYKFIPIESLMKNGFRVKLIKRQTQF
>Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_6707_Len579_Cov20_OG5_126554
RVRAAQLLSWFLYEITENNEILSNINNEINEYINYDNIKLVYLENCFLETLRLRPSVPHLVRQANVDINIPYTIRKDDTIIVPTYAMGRMDYIWENPLKFDPNRFKHSPSKYPAFNIKPRLCLGKHVALLEAKIAIAKLFQKYKFEPIKSVMKNGFKVKVVPNIFK
>Sr_rh_Tr01_XX_Sr_rh_Tr01_Contig_9807_Len483_Cov16_OG5_126554
SINAEYGNYDNIKLIYLENCFLETLRLRPSVPHLVRQANVDIPIPYTIRKDDTIIVPTYAMGRMDYIWENALTFDPNRFKYSPSKYPAFNIKPRLCLGKHVALLEAKIAIAKLFKKYKFEPIKSVMKNGFKVKVVPIE
>Sr_rh_Bv04_XX_Sr_rh_Bv04_Contig_12687_Len1599_Cov64_OG5_126554
PFIGHNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKDYMFEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYGELKKHEEIINKKIQDIISKRKEQYDIISIFLISDKELRDICANFILAGRDTTGQLLSWFCYEICENKHIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRVAKTDILIPHVIRKGDTIIVPCYAMGRMPTIWKEPLKFDPLRFNFPPCKYPAFNIPPRLCLGKHVAIMEAKIAIVKLFRKYELIPDTSMMKTGFRVRLKSR
>Sr_rh_Bv05_XX_Sr_rh_Bv05_Contig_10933_Len1599_Cov61_OG5_126554
PFIGHNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKDYMFEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYGELKKHEEIINKKIQDIISKRKEQYDIISIFLISDKELRDICANFILAGRDTTGQLLSWFCYEICENKHIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRVAKTDILIPHVIRKGDTIIVPCYAMGRMPTIWKEPLKFDPLRFNFPPCKYPAFNIPPRLCLGKHVAIMEAKIAIVKLFRKYELIPDTSMMKTGFRVRLKSR
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_10605_Len690_Cov15_OG5_126554
KQVQYDLLSLFLMSIKELRDISMNFIIAGRDTTAQTLSWFTYELCPHVYDQIMKEIDQVIGTYDLIKLKYLENALLETLRLHPAVPHLLRFATRDFRLPHIIRKGDGIVCAAYLMGHISHLWDDPERFDPTRFEYDPSYFPAFNIAPRICLGKHVALLEAKIAAIKLFKKFKIIPVPAPMKNGFKVTLHNIETD
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_18259_Len648_Cov21_OG5_126554
YDLLSLFLMSIKELRDISMNFIIAGRDTTAQTLSWFIYELSPHVQDQIMNEINHVIGDYHLIKLKYLENALLETLRLHPAVPHLLRFATRDFRIPHIIRKGDGIVCAAYIMGHVPELWNNPHQFDPTRFEYDPSYFPAFNIAPRLCLGKHVALLEAKIAAVKLLKKFKIIPVPAPMKNGFKVTLECRN
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_13702_Len678_Cov20_OG5_126554
IRYDLLSLFLITEKELRDIAMNFIIAGRDTTAQTLSWFIYELTSPDVEENILKEIDSIGTYENIKFKYLENALLETLRMHPAVPHLVRYATRDILLRNIVRKGDGIVVGAYVMGHIPWLWPDPERFDPTRFEYDPCYFPVFNVAPRLCLGKHVALLEAKIAAVKLLKKYRIEAIKAPMRYGFKVKLHPRL
>Sr_rh_Ssp1_XX_Contig_1307_Len810_Cov61_OG5_126554
PFIGHIKNFIFIVDPKIIDLLFDKRPMFGDGIFSSDGNIWKKHRALASRMFTLRSLRDYMFKSFCSTTDEFINKLSVDIYDMYNRLTLEAFTYVAFGTNLGAISQAPEELEFTSFDKICKRFFDPIKM
>Sr_rh_As01_XX_Sr_rh_As01-LKH294_2597_Len693_Cov4_OG5_126554
YDLLSMFIITDQELRDITFSFIIAGKDTTAQMLSWFMYHIHNLQHIFDGVRKEIKEVFGEYDKVKCSFIECCLKESLRLYPSVPHLVRTAVKDMKLPYTLRKGDELFVSTFAMGRMPWIWKDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAG
>Sr_rh_As03_XX_Sr_rh_As03-LKH313_10378_Len717_Cov12_OG5_126554
YDLLSMFIITDQELRDITFSFIIAGKDTTAQMLSWFMYHIHNLQHIFDGVRKEIKEVFGEYDKVKCSFIECCLKESLRLYPSVPHLVRTAVKDMKLPYTLRKGDELFVSTFAMGRMPWIWKDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAGFQAHLQK
>Sr_rh_As05_XX_Sr_rh_As05-LKH295_19507_Len444_Cov9_OG5_126554
KVKCSFIECCLKESLRLYPSVPHLVRTAVKDMKLPYTLRKGDELFVSTFAMGRMPWIWKDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAGFQAHLQK
>Sr_rh_As02_XX_Sr_rh_As02-LKH324_14147_Len456_Cov8_OG5_126554
EYEKVKCRYIECCLKESLRLYPSVPHLVRTAVKDIKLPYTVRPGDEVFVSAYAMGRMPWVWEDPLEFKPERFQPDPSMYPAFNIAPRICLGRHVALLEGKIAIIKLFTKYKSITAVQSPMGAGFQAHLQK
>Sr_rh_Emar_XX_Contig_8285_Len723_Cov12_OG5_126554
FDLISMFIITDEELRDITFSFIIAGKDTTAQMLSWLMYHLHKLQQVMDNIRAEIRRVFGDYEKVQCQYIECCLKESLRLYPSVPYLVRTPVKDIATHYVIRKGDEVMVAAYSMARMPWLWDDPLAFKPERFMYDPSLYPAFNIAPRICLGRHVALMEGKIAVIKLFSKYKNITAVKSPMETGFKAHLNVR
>Sr_rh_Hg01_XX_Sr_rh_Hg01-LKH304_7769_Len600_Cov7_OG5_126554
INFIIAGKDTTAQMLSWFFYHINNLYDIERKMRDEIEEIFGTYEKVKCDYIECCLNETLRLYPSVPHLVRTAVKDIRTPYVIRKGDEIFISAWSMGRAPWIWDEPLQFKPERFMIDPSRFPAFNVAPRICLGKHVALLEGKLALIKIFKKYKHISAVPGPMKVGFKVRMRKE
>Sr_rh_Hind_XX_Contig_2010_Len1647_Cov26_OG5_126554
PFVGHHRIFITNPKIAKQLFDAIKRELLGDGIFATNGQRWREHRAIASHMFTVRSLRDYMFDVFCYTTDQLLDKLEMTVDDVNIYDMYNRLTFEAFTKIAFGVDVGEIRFDRAELRKKEMRSHIDWIEDYIYKVIANRRAYYYDLLSMFLISDKELRDITVNFIIAGKDTTAQMLSWFTYHLHKLIEVENKIRAEITKVFGNYKQVQCTYLECCFLESLRLYPSVPHLARAAVVDIETYYTIRAGDEVLICPLSMSRLEWIWPNAEQFIPERFAFDPWVYPAFNIPPRLCLGKHVALLEGKIALIKLFSRFSSIVRSDAPMPHGYKVHLRKRVEP
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_6436_Len489_Cov15_OG5_126554
IKNIFGKYEDVKCNYIEACLYESLRLYPSVPNLVRTAIEDIKLPHTIRKGEEIVISTYSMGRSKYIWEDPMKFNPERFIYEPWVYPAFNLKPRLCLGKHVAILEGKIAIIKLFSQFQSIQAFQSAMKNGLKVVLK
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_6395_Len597_Cov13_OG5_126554
IAGRDTTSQMLSWFMFHLTKNDGMDLIEKNIRNEIKNIFGKYEDVKCNYIEACLYESLRLYPSVPNLVRTAIEDIKLPHTIRKGEEIVISTYSMGRSKYIWEDPMKFNPERFIYEPWVYPAFNLKPRLCLGKHVAILEGKIAIIKLFSQFQSIQAFQSAMKNGLKVVLK
>Sr_rh_Sspa_XX_Contig_5747_Len702_Cov21_OG5_126554
YDLLSMFIISDRQLRDITMNFIIAGRDTTSQMLSWFMYHLTNSDMKTIESNIRNEIKTIFGTYDDVKCNYIEACLLESLRLYPSVPNLVRTAIEDIQTPYTIRKNDEIMISTYSIGRSKYIWKDPLTFNPERFLYDPSVYPAFNLKPRLCLGKHVALMEGKIAIIKLFNKFKTIKCVPSAMKNGWKVTLE
>Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_256_Len708_Cov14_OG5_126554
YDLLSMFIISDDELRDITMNFIIAGRDTTSHMLSWFLFHLTQNDGMSDIEKKIRNEIDNIFGSYEKVKCEYIEACLYETLRLYPSVPHLLRTAVEDIKTKYTIRKGDDIVISAYAMGRSKYIWDKPLKFDANRFIYDASVYPAFNIQPRLCLGKHVAILEGKIALIKLFSRFKTIKCLPSAMKNGWKLDLK
>Sr_rh_QjpA_XX_Sr_rh_QjpA-LKH288_9889_Len564_Cov19_OG5_126554
MLSWFYFHLTQNDGMSEIEKNIRNEIDNIFGSYENVKCEYIEACLYETLRLYPSVPHLLRTAVEDIKTKYTIRKGDDIVISAYAMGRSKYIWDDPLKFDANRFIYDASVYPAFNIQPRLCLGKHVAILEGKIALIKLFTKFKNIKCLPSAMKNGWKLDLK
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_13181_Len408_Cov3_OG5_126554
VECKYIECCLKETLRLYPSVPHFSREMVKDFKVKIYTFYKGDEIIITTFPLGRLPWLWENADKFIPERFMYDNSQYPAFNIAPRTCLGKNVALLEGKIAVVAMFTNFKSFQAVPAAM
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_6167_Len516_Cov7_OG5_126554
IVENIRKEIIQKFGDYDKVECKYIECCLKETLRLYPSVPHFSREMVKDFKVKIYTFYKGDEIIITTFPLGRLPWLWGNADKFIPERFMYDNSQYPAFNIAPRTCLGKNVALLEGKIAVVAMFTNFKSFQAVPAAMDGGFKIHIH
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_190_Len516_Cov4_OG5_126554
IVENIRKEIIEKFGEYNKVECKYIECCLKETLRLYPSVTHFSREMVKDFKLKIYTFYKGDEIVVTTFAMGRLPWLWKNAEKFVPERFMYDQSKYVAFNISPRTCLGKNVALLEGKIAVIAMFSQFKSFRTVPAAMDGGFNIYVE
>Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_6601_Len603_Cov10_OG5_126554
IAGRDTTSQMISWFMFHLLNQSNKRNIIIDNIKNEIISVFGEYDKVQCVYLDACLKETLRLYPSVPHFVRQMVTDLTLNIYTFEKGDEIVVFTIALGKLPWLWENADEFIPERFIYDAEIWPAFNIAPRTCLGKNVALMEGKMALIAMFSNFKNFKTVAAPFRNGFKIFLD
>Sr_rh_Tr01_XX_Sr_rh_Tr01_Contig_5346_Len690_Cov14_OG5_126554
YDLLSIFIINDKFLRDVTMNFIIAGRDTTSQMLSWFIFHLLNEDEKRNVIINNIKKEIVDVFGEYDKVKCSYIEACLKETLRLYPSVPHFVREMVSDLTLNIYTFHKGDEVIVCTIALGKLPWLWENANEFIPERFIYDAHIWPAFNIAPRTCLGKNVALLEGKTAIIAMFSNFKKMTTVPAPFRNGFNIYLK
>Sr_rh_Tr02_XX_Sr_rh_Tr02_Contig_17503_Len567_Cov70_OG5_126554
DITMNFIIAGRDTTSQMLSWFMFHLYNEDDKRNVIINNIKNEIISIFGEYNKVKCDYIEACLKETLRMYPSVPHFVREMVTDMKINIYIFEKGNEIIICTIALGKLPWLWDNANEFIPERFIYDNHIYPAFNILPRTCLGKNVALLEGKIAIISMFSNFNKFKAVP
>Sr_rh_FF02_XX_Sr_rh_FF02_Contig_5686_Len600_Cov5_OG5_126554
LLSWFLYLVYENGKKFIEEKILKEIEEKCPNFSELECEYLESALLETLRLYPSVHHLERTAVEDIKLSLEQYIIREGDHIMVEAYALGRATWIWGDDALEFNPLRFYYDPSQYLAFNIAPRICLGKHVALLEAKLVVIKLLRHFTIQPVKSAMKNGYKIILKRR
>Sr_rh_Hhir_XX_Contig_20411_Len594_Cov57_OG5_126554
QNVVFISDPVQTKYIYDRRPMFGHGIFVSDGHEWRKQRKIASRLFTMRNLKHYMFENFETCSKRLVNKLPIDLFDMFNRLTMDGFVASAFGVYSDTIEQAPHDTRFEAFDGGCDRFIARPFLETLKHAKRFCSIRERIESGE
>Sr_rh_Pfue_XX_Sr_rh_Pfue_Contig_20190_Len552_Cov3_OG5_126554
ERIESHDLLSLFMFTEEELQDLCLNFIIAGRDTTAENISWLMYELSKNPHVLQLVIDEINTLTYDNVELTYLESALLETQRLHPSVPTLNRQAKRDIKLPFTVKKGDIYMVHNYAMGRAPWIWEDPLRFDPTRFSYEPQVFPQFNIAPRMCLGKHVAMME
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_13699_Len690_Cov51_OG5_126554
YNLLSLFLNYTLDELRDICINFIIAGRDTTAETLTWLCVELSSHPDIVDQIRNEINQVTYESLEMKYTESALLETQRLHPSVPSLIRFAFQDIVLPYTIRKGDAVNVFNYAMGRSPWIWENPLQFHPPRFQFHPSVYPAFNIGQRLCLGRHVALMHAKVVLYHLFKHFNFKAVPAPLKNGFQVHLQPLHPTQN
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_18519_Len663_Cov18_OG5_126554
DLLTLYAITRSELQDVCVNFIIAGRDTTALNLCWLFILLAQNPHCLQQLKDEIRSISFKTLDMTYTESCILEAQRIYPSVPSLTRVAVTDIPLPYVIHKDEIVVISTFAMNRSPKIWENPLQFDPSRFEHEPHIYPSFNIGQRLCLGRHVALLVAKVVLYHFFQNFDFQIDMAPLTNGLPMRIIPLSSSV

0
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/Seqs.Orig.fas.FIXED.MSA.MAFFT.Removed_Col Normal file
View File

20
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/Seqs.Orig.fas.FIXED.Removed_Seq Normal file
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@ -0,0 +1,20 @@
>seq0025
PFFGHNFIFLCDPKLIDLIFDAEKKPMLGHGIFLSDGARWKKQRSIASRMFTVRSLRDYM
FEVFVDTSNTFIDKCLIQSEEIDIYDMFNRLTLEAFTEVAFGVSLNIMSFDRGQ
>seq0040
PFIGHIKNFIFIVDPKIIDLLFDKRPMFGDGIFSSDGNIWKKHRALASRMFTLRSLRDYM
FKSFCSTTDEFINKLSVDIYDMYNRLTLEAFTYVAFGTNLGAISQAPEELEFTSFDKICK
RFFDPIKM
>seq0060
QNVVFISDPVQTKYIYDRRPMFGHGIFVSDGHEWRKQRKIASRLFTMRNLKHYMFENFET
CSKRLVNKLPIDLFDMFNRLTMDGFVASAFGVYSDTIEQAPHDTRFEAFDGGCDRFIARP
FLETLKHAKRFCSIRERIESGE
>seq0063
DLLTLYAITRSELQDVCVNFIIAGRDTTALNLCWLFILLAQNPHCLQQLKDEIRSISFKT
LDMTYTESCILEAQRIYPSVPSLTRVAVTDIPLPYVIHKDEIVVISTFAMNRSPKIWENP
LQFDPSRFEHEPHIYPSFNIGQRLCLGRHVALLVAKVVLYHFFQNFDFQIDMAPLTNGLP
MRIIPLSSSV

20
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/Seqs.Orig.fas.FIXED.Removed_Seq.With_Names Normal file
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@ -0,0 +1,20 @@
>Sr_rh_Pina_XX_Contig_8772_Len858_Cov33_OG5_126554
PFFGHNFIFLCDPKLIDLIFDAEKKPMLGHGIFLSDGARWKKQRSIASRMFTVRSLRDYM
FEVFVDTSNTFIDKCLIQSEEIDIYDMFNRLTLEAFTEVAFGVSLNIMSFDRGQ
>Sr_rh_Ssp1_XX_Contig_1307_Len810_Cov61_OG5_126554
PFIGHIKNFIFIVDPKIIDLLFDKRPMFGDGIFSSDGNIWKKHRALASRMFTLRSLRDYM
FKSFCSTTDEFINKLSVDIYDMYNRLTLEAFTYVAFGTNLGAISQAPEELEFTSFDKICK
RFFDPIKM
>Sr_rh_Hhir_XX_Contig_20411_Len594_Cov57_OG5_126554
QNVVFISDPVQTKYIYDRRPMFGHGIFVSDGHEWRKQRKIASRLFTMRNLKHYMFENFET
CSKRLVNKLPIDLFDMFNRLTMDGFVASAFGVYSDTIEQAPHDTRFEAFDGGCDRFIARP
FLETLKHAKRFCSIRERIESGE
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_18519_Len663_Cov18_OG5_126554
DLLTLYAITRSELQDVCVNFIIAGRDTTALNLCWLFILLAQNPHCLQQLKDEIRSISFKT
LDMTYTESCILEAQRIYPSVPSLTRVAVTDIPLPYVIHKDEIVVISTFAMNRSPKIWENP
LQFDPSRFEHEPHIYPSFNIGQRLCLGRHVALLVAKVVLYHFFQNFDFQIDMAPLTNGLP
MRIIPLSSSV

366
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/Seqs.Orig.fas.FIXED.Without_low_SP_Seq Normal file
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@ -0,0 +1,366 @@
>seq0000
ISFDASVFKWGELAAHMKVVDGFADEMIAKCRYDLLSKFIISTRELRDILLNFIIAGRDT
TAQLLSWCSYELCRNPEIQSKIYDELKTYQTVKMKYLEAVLYESLRLHPSVPNMTRFATR
DIQLNNTIRKGDAVLVSNYVLGRLQKWWDNPYKFDPMRFYYKAHEYTNFNIPPRLCLGKH
VAMMEAKIGLATILKDYRMELKPGPMKNGCYINFIDRLSE
>seq0001
YDLLTKFIISTRELRDILLNFIIAGRDTTAQLLSWCSYELCLNPEIQDKVYEELSTYQSV
KMKYLEAVLYEALRLHPSVPNMSRFATRDIQLSDVIRKGDCILVSNYVLGRLHQWWENAL
QFDPMRFYYKAHEYTNFNVPPRLCLGKHVALMEAKIALATVLKDYRMELKPGPMKNGCFI
NFIDRSTK
>seq0002
IDLLFDADKSPVLGKGIFVADGNIWKKHRAIASRMFTVRSLRDYMFEVFMDTTDAFIDKC
ELYTQCVDIYDMYNRLTLEAFTMVAFGVPLGVISFDDGQTRVRTLKKHEQIINEFANTII
QKKRKHFYDIMSLFLVSDAELRDVALNFIVAGRDTTAQLLSWFSYAMSENKGVEEKIMRE
IEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAKVDIELPDVIRKGDAIIIPTFAM
GRMPWIWKDPLKFNPDRFNFTPSQYPAFNIPPRLCLGKHVALMEAKIAIIKLFKKYKLEA
VPSVMKYGFKVKLIPR
>seq0003
LLSWFSYAMSENKGVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAK
VDIELPDVIRKGDAIIIPTFAMGRMPWIWKDPLKFNPDRFNFTPSQYPAFNIPPRLCLGK
HVALMEAKIAIIKLFKKYKLEAVPSVMKYGFKVNLIPR
>seq0004
ISFDDGQTRVRTLKKHVQIINEFANTIIQKKRKHFYDIMSLFLVSDAELRDVALNFIVAG
RDTTAQLLSWFSYAMSENKGVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPH
LIRYAKVDIELPDVIRKGDAIIIPTFAMGRMPWIWKDPLKFNPDRFNFTPSQYPAFNIPP
RLCLGKHVALMEAKIAIIKLFKKYKLEAVPSVMKYGFKVKLIPR
>seq0005
PYFGHNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYM
FEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTL
KKHINIINEFANEFIQKKREHLYDIMWLFLISDEELRDIALNFIIAGRDTTAQLLSWCTY
LLSENQHVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDIALPD
IIRKGDGIVVPTFAMGRMPWIWKDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEA
KIAIIKLFKKYKLEPVSSVMKNGFKVKLIPRES
>seq0006
PYFGHNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYM
FEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTL
KKHINIINEFANEFIQKKREHLYDIMWLFLISDEELRDIALNFIIAGRDTTAQLLSWCTY
LLSENQHVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDIALPD
IIRKGDGIVVPTFAMGRMPWIWKDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEA
KIAIIKLFKKYKLEPVSSVMKNGFKVKLIPRES
>seq0007
PYFGHNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYM
FEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTL
KKHINIINEFANEFIQKKREHLYDIMWLFLISDEELRDIALNFIIAGRDTTAQLLSWCTY
LLSENQHVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDIALPD
IIRKGDGIVVPTFAMGRMPWIWKDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEA
KIAIIKLFKKYKLEPVSSVMKNGFKVKLIPR
>seq0008
PYFGHHFIFVVDPALIDLLFDADKRPILGRGIFTSDGLLWKKHRSIASRMFTVRSLRDYM
FQVFRDTTDTFMSKCEICANHVDIYDMFHRLTLEAFTQVAFGVSLGVIAFDDAQTKARTL
KAHVKVINEFAERIIRSKRKDYYDIMSLFLISDQELRDMALNFIIAGRDTTAQLLSWFSY
AMTENADVESKLLAELRQAVADYDAIDCTYLENALLESLRLRPSVPHLVRYAKVDIDLPE
TIRKGNGIVIPTFAMGRMPWIWKDPLKFDPDRFNYTASQYPAFNIPPRLCLGKHVALLEA
KIAVVKLFTKYKLVPMPSVMKNGFKVKLIPRE
>seq0009
LMSWFSYAMTENEEVEKKIVEEIRLYVGDYNTINCQYLENAFLESLRMRPVLPHLVRYAK
VDIALPHVIRKGDGLIVPSFAMGRMPWIWKDPNTFNPDRFKYTPAQYPAFNIPPRLCLGK
HVALLEAKIMIIKLFKKYKLEAVPNIMKNGLKVRLIPRGK
>seq0010
YDLMSLFLISDDELRDVALNFILAGRDTTAQLMSWFSYAMTENEEVEKKIVEEIRLYVGD
YNTINCQYLENAFLESLRMRPVLPHLVRYAKVDIALPHVIRKGDGLIVPSFAMGRMPWIW
KDPNTFNPDRFKYTPAQYPAFNIPPRLCLGKHVALLEAKIMIIKLFKKYKLEAVPNIMKN
GLKVRLIPRGK
>seq0011
YDLMSLFLVSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENEEVEGKIMQEMQQFIGD
YNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDITLPDVVRKGDGIIIPTYAMGRMPWIW
KDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLEALPSVMKN
GFKVRLVPRCK
>seq0012
RSSSKKQHFYDLMSLFLVSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENEEVEGKIM
QEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDITLPDVVRKGDGIIIPTY
AMGRMPWIWKDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKL
DALPSVMKNGFKVRLVPRCK
>seq0013
YDLMSLFLVSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENEEVEGKIMQEMQQFIGD
YNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDITLPDVVRKGDGIIIPTYAMGRMPWIW
KDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLEALPSVMKN
GFKVRLVPRCK
>seq0014
MNQFIGNYDMLNCQYLESSFYESLRLQPSLPHLVRYAKVDIPLPDVIRKGDGVIVPMYAM
GRMPWLWKNPDKFDPERFNYTPAEYPAFNIPPRVCLGKHVALMEAKIAVIKLLKKFKLEA
LPTVMKNGFKVKLIPRCK
>seq0015
YDLMSLFLITDDELRDIALNFIIAGRDTTAQLLSWFSYCITDNKQIEENIMNEINQYIGD
YNVIQCEYLESSFLETLRLRPSVPHLVRYAKIDIKLPDIIRKGDGIVIPTYAMGRMPWIW
NDPLKFNPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLQPLPSIMRN
GFKVKLIPRDSK
>seq0016
PLIGHNFIFMVSPKLIDLLFDSNKLPILGHGIFNADGQLWKKHRSIASRMFTVRSLRDYM
FNVFVDTTDKWILKSEILKNFVDIYNMNLRLTMEAFTKVAFGVDLGTIAMDDGITKLKSL
KKHSHILNDFAKKVIDDRKSYDLLSLFLVNVSELRDVCINFIVAGRDTTAQLLSWFMYEL
SNPKIEEKIMEEINEYIGEYKQIECEYLENCLLETLRLRPSVPHLVRYAKCDIELPGHII
RKGDGIVIPTYAMGRMPWIWKDPLKFNPDRFKHPPSKYPAFNIPPRLCLGKHVALLEAKI
AIVKLFKKYKLVKLPSVMKYGYKVKLEPRNQ
>seq0017
FNDTTDDFIAKCEICEMSVNIYDMFHRLTLEAFTMVAFGVPLGVISFDEGRTKWRTLKKH
LKIINEFASNIIHKKRQQFYDLISLFMITDEELRDIALNFIIAGRDTTAQLLSWFSYLVT
ENESVESKIMNEINECVADYNMVKCEYLENAFLETLRLRPSVPHLVRYAKTDIKLPHIIR
KGDGIVIPTFAMGRMPWIWSNPLEFNPDRFKFTPAEYPAFNLPPRLCLGKHVALLEAKIA
IIKLFKKYKLEAVPSVMKYGFNVKLVPRKQET
>seq0018
NMYNRLTLEAFTQVAFGVPLGCISFDRGQSKLRELRKHLKVVNEFVSKVIVERKFDLLSL
FLTSDKELRDVAMNFIVAGRDTTAQLLSWFSYLISENQECEAKVTKEIMEHVPTYEMVKC
QYLENALLETLRLRPSVPHLVRFAKVDILLPHVIRKGDGIVVPTYAMGRMPSLWKDPLKF
DPSRFEYTPSEYPAFNIPPRLCLGKHVALLESKIAIIRLFRKFKLEPLSSIMKNGFRVKL
VPR
>seq0019
KPVFGVGILSTDGKLWKKYRSIGSRIFTVRSLRDFMYEVFDSTSSALVKKSLIQEQFVDL
YNMFNRLTLEAFTHIAFGVSMKTIAFDRSQWDFKELKKHAGILNDKIGLLVRQRKEQYKD
LLTLYFATDLELRDLIMNFVVAGRDTTAQLCSWFSYEISEHAHVDARILEEIHTYVGTYQ
MVKLKYMESCFLETLRLHPSVPHLVRFALVDIKLPHVIRKGDGVVVPVYAMGRMPWLWPK
PLVFDPMRFEYTPALFPAFNIPPRLCLGKHLALLEAKVVMVKILRKYRIVARESIMKDGF
YARLQPRAQQQQ
>seq0020
MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIIS
FDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAG
KDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHL
VRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPR
VCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>seq0021
MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIIS
FDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAG
KDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHL
VRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPR
VCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>seq0022
MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIIS
FDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAG
KDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHL
VRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPR
VCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>seq0023
MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRE
LKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAGKDTTAQLLSW
FSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDIPL
PHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALL
ECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>seq0024
MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRE
LKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAGKDTTAQLLSW
FSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDIPL
PHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALL
ECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>seq0026
PFFGHNFIFLCDPKLIDFVFDANKKPLLGHGIFVSDGAKWKKHRSIASHMFTVRSLREYM
FEVFVDTSNTFLDKCLIQSKEIDIYNMFNRLTLEAFTKVAFGVSLNIISFDRGQTAWREL
HIHTAIIEQQISEVIQRNVNYDLLSLFLASENELRDVAMNFIIAGRDTTAQLLSWFSYLL
TNPKVEQMIVDEINANIGDYEMVKCQYLENAFLETLRLHPSVPHLVRYAKTDIPLLNIIR
KGDCIIIPTYAMGRMPWLWNNALTFDPSRFEYSPAQYPAFNIPPRLCLGKHVALLEAKIV
IIKLLRKYRIVAIPSVMKNGFKVRLELR
>seq0027
ITMNFIIAGKDTTAQLLSWFFYVITHNRSDEVISNILNEFDAQSNGYEKMKLQYLEYCLL
ETLRLFPSVPHLIRFAKSDIFRVDYTIRKGDGIVIPLYAMGRMPWIWENPDEFDPLRFQF
LPSEYPAFNIPPRLCLGKHVALMEAKIAVIKLLKKYRFVTQESPMKNGYKVKLIPK
>seq0028
LPILGRGIIASDGKIWKRHRKVASRMFTLSSLRDYMFEVFNSTTDTLMDKMLIHKDHVDL
YDMYNRLTLEAFTEVAFGVKLGVISFDRGASKFKELLFHEKTINNMVWDLVHKCKERLCD
LLSLFIITDVELRDITINFVIAGRDTTAQLLSWFSYLITWPQVEKKVLKEIKEVFPDYGK
IKLEYLENAFLETLRMHPSVPHLVREAKVDIHLPHIIRKGDGVIVPTYAMGRLPWLWEKP
EEMNPDRFQFTPSEYPAFNIPPRLCLGKHVSLMEAKIQIVKLLPKYKFEPLPSAMKNGFK
VKLVPRDTQ
>seq0029
LRDVAMNFIIAGRDTTAQLLSWFMYLFTNKEIEKPILNEINSIINYIDVKLKYLENCFFE
TLRLRPAVPHLLRFAKTDIQLKYVIRKGDGICIPTFAMNRMPWIWDNPFKFDPNRFDQSP
SKYVAFNIPPRLCLGKHVALLEAKLLVLELLTRFKIEPVLSAMRNGFKVYFHPR
>seq0030
YVIRKGDGICIPTFAMNRMPWIWDNPFKFDPNRFDQSPSKYVAFNIPPRLCLGKHVALLE
AKLLVLELLTRFKIEPVLSAMRNGFKVYFHPR
>seq0031
IKLNYLENSFLETLRLRPSVPHLVRKAVVDIKIPHIIRKDDTILVPTYAMGRMEWIWKDA
LKFDPTRFEYSPSKYPAFNIKPRLCLGKHVALLEAKIAIVKLFKKYKFIPIESLMKNGFR
VKLIKRQT
>seq0032
NQHVEDKIMDEINQHINYNTIKLNYLENSFLETLRLRPSVPHLVRKAVVDIKIPHIIRKD
DTILVPTYAMGRMEWIWKDALKFDPTRFEYSPSKYPAFNIKPRLCLGKHVALLEAKIAIV
KLFKKYKFIPIESLMKNGFRVKLIKRQTQF
>seq0033
RVRAAQLLSWFLYEITENNEILSNINNEINEYINYDNIKLVYLENCFLETLRLRPSVPHL
VRQANVDINIPYTIRKDDTIIVPTYAMGRMDYIWENPLKFDPNRFKHSPSKYPAFNIKPR
LCLGKHVALLEAKIAIAKLFQKYKFEPIKSVMKNGFKVKVVPNIFK
>seq0034
SINAEYGNYDNIKLIYLENCFLETLRLRPSVPHLVRQANVDIPIPYTIRKDDTIIVPTYA
MGRMDYIWENALTFDPNRFKYSPSKYPAFNIKPRLCLGKHVALLEAKIAIAKLFKKYKFE
PIKSVMKNGFKVKVVPIE
>seq0035
PFIGHNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKDYM
FEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYGEL
KKHEEIINKKIQDIISKRKEQYDIISIFLISDKELRDICANFILAGRDTTGQLLSWFCYE
ICENKHIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRVAKTDILIPHV
IRKGDTIIVPCYAMGRMPTIWKEPLKFDPLRFNFPPCKYPAFNIPPRLCLGKHVAIMEAK
IAIVKLFRKYELIPDTSMMKTGFRVRLKSR
>seq0036
PFIGHNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKDYM
FEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYGEL
KKHEEIINKKIQDIISKRKEQYDIISIFLISDKELRDICANFILAGRDTTGQLLSWFCYE
ICENKHIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRVAKTDILIPHV
IRKGDTIIVPCYAMGRMPTIWKEPLKFDPLRFNFPPCKYPAFNIPPRLCLGKHVAIMEAK
IAIVKLFRKYELIPDTSMMKTGFRVRLKSR
>seq0037
KQVQYDLLSLFLMSIKELRDISMNFIIAGRDTTAQTLSWFTYELCPHVYDQIMKEIDQVI
GTYDLIKLKYLENALLETLRLHPAVPHLLRFATRDFRLPHIIRKGDGIVCAAYLMGHISH
LWDDPERFDPTRFEYDPSYFPAFNIAPRICLGKHVALLEAKIAAIKLFKKFKIIPVPAPM
KNGFKVTLHNIETD
>seq0038
YDLLSLFLMSIKELRDISMNFIIAGRDTTAQTLSWFIYELSPHVQDQIMNEINHVIGDYH
LIKLKYLENALLETLRLHPAVPHLLRFATRDFRIPHIIRKGDGIVCAAYIMGHVPELWNN
PHQFDPTRFEYDPSYFPAFNIAPRLCLGKHVALLEAKIAAVKLLKKFKIIPVPAPMKNGF
KVTLECRN
>seq0039
IRYDLLSLFLITEKELRDIAMNFIIAGRDTTAQTLSWFIYELTSPDVEENILKEIDSIGT
YENIKFKYLENALLETLRMHPAVPHLVRYATRDILLRNIVRKGDGIVVGAYVMGHIPWLW
PDPERFDPTRFEYDPCYFPVFNVAPRLCLGKHVALLEAKIAAVKLLKKYRIEAIKAPMRY
GFKVKLHPRL
>seq0041
YDLLSMFIITDQELRDITFSFIIAGKDTTAQMLSWFMYHIHNLQHIFDGVRKEIKEVFGE
YDKVKCSFIECCLKESLRLYPSVPHLVRTAVKDMKLPYTLRKGDELFVSTFAMGRMPWIW
KDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMG
AG
>seq0042
YDLLSMFIITDQELRDITFSFIIAGKDTTAQMLSWFMYHIHNLQHIFDGVRKEIKEVFGE
YDKVKCSFIECCLKESLRLYPSVPHLVRTAVKDMKLPYTLRKGDELFVSTFAMGRMPWIW
KDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMG
AGFQAHLQK
>seq0043
KVKCSFIECCLKESLRLYPSVPHLVRTAVKDMKLPYTLRKGDELFVSTFAMGRMPWIWKD
PLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAG
FQAHLQK
>seq0044
EYEKVKCRYIECCLKESLRLYPSVPHLVRTAVKDIKLPYTVRPGDEVFVSAYAMGRMPWV
WEDPLEFKPERFQPDPSMYPAFNIAPRICLGRHVALLEGKIAIIKLFTKYKSITAVQSPM
GAGFQAHLQK
>seq0045
FDLISMFIITDEELRDITFSFIIAGKDTTAQMLSWLMYHLHKLQQVMDNIRAEIRRVFGD
YEKVQCQYIECCLKESLRLYPSVPYLVRTPVKDIATHYVIRKGDEVMVAAYSMARMPWLW
DDPLAFKPERFMYDPSLYPAFNIAPRICLGRHVALMEGKIAVIKLFSKYKNITAVKSPME
TGFKAHLNVR
>seq0046
INFIIAGKDTTAQMLSWFFYHINNLYDIERKMRDEIEEIFGTYEKVKCDYIECCLNETLR
LYPSVPHLVRTAVKDIRTPYVIRKGDEIFISAWSMGRAPWIWDEPLQFKPERFMIDPSRF
PAFNVAPRICLGKHVALLEGKLALIKIFKKYKHISAVPGPMKVGFKVRMRKE
>seq0047
PFVGHHRIFITNPKIAKQLFDAIKRELLGDGIFATNGQRWREHRAIASHMFTVRSLRDYM
FDVFCYTTDQLLDKLEMTVDDVNIYDMYNRLTFEAFTKIAFGVDVGEIRFDRAELRKKEM
RSHIDWIEDYIYKVIANRRAYYYDLLSMFLISDKELRDITVNFIIAGKDTTAQMLSWFTY
HLHKLIEVENKIRAEITKVFGNYKQVQCTYLECCFLESLRLYPSVPHLARAAVVDIETYY
TIRAGDEVLICPLSMSRLEWIWPNAEQFIPERFAFDPWVYPAFNIPPRLCLGKHVALLEG
KIALIKLFSRFSSIVRSDAPMPHGYKVHLRKRVEP
>seq0048
IKNIFGKYEDVKCNYIEACLYESLRLYPSVPNLVRTAIEDIKLPHTIRKGEEIVISTYSM
GRSKYIWEDPMKFNPERFIYEPWVYPAFNLKPRLCLGKHVAILEGKIAIIKLFSQFQSIQ
AFQSAMKNGLKVVLK
>seq0049
IAGRDTTSQMLSWFMFHLTKNDGMDLIEKNIRNEIKNIFGKYEDVKCNYIEACLYESLRL
YPSVPNLVRTAIEDIKLPHTIRKGEEIVISTYSMGRSKYIWEDPMKFNPERFIYEPWVYP
AFNLKPRLCLGKHVAILEGKIAIIKLFSQFQSIQAFQSAMKNGLKVVLK
>seq0050
YDLLSMFIISDRQLRDITMNFIIAGRDTTSQMLSWFMYHLTNSDMKTIESNIRNEIKTIF
GTYDDVKCNYIEACLLESLRLYPSVPNLVRTAIEDIQTPYTIRKNDEIMISTYSIGRSKY
IWKDPLTFNPERFLYDPSVYPAFNLKPRLCLGKHVALMEGKIAIIKLFNKFKTIKCVPSA
MKNGWKVTLE
>seq0051
YDLLSMFIISDDELRDITMNFIIAGRDTTSHMLSWFLFHLTQNDGMSDIEKKIRNEIDNI
FGSYEKVKCEYIEACLYETLRLYPSVPHLLRTAVEDIKTKYTIRKGDDIVISAYAMGRSK
YIWDKPLKFDANRFIYDASVYPAFNIQPRLCLGKHVAILEGKIALIKLFSRFKTIKCLPS
AMKNGWKLDLK
>seq0052
MLSWFYFHLTQNDGMSEIEKNIRNEIDNIFGSYENVKCEYIEACLYETLRLYPSVPHLLR
TAVEDIKTKYTIRKGDDIVISAYAMGRSKYIWDDPLKFDANRFIYDASVYPAFNIQPRLC
LGKHVAILEGKIALIKLFTKFKNIKCLPSAMKNGWKLDLK
>seq0053
VECKYIECCLKETLRLYPSVPHFSREMVKDFKVKIYTFYKGDEIIITTFPLGRLPWLWEN
ADKFIPERFMYDNSQYPAFNIAPRTCLGKNVALLEGKIAVVAMFTNFKSFQAVPAAM
>seq0054
IVENIRKEIIQKFGDYDKVECKYIECCLKETLRLYPSVPHFSREMVKDFKVKIYTFYKGD
EIIITTFPLGRLPWLWGNADKFIPERFMYDNSQYPAFNIAPRTCLGKNVALLEGKIAVVA
MFTNFKSFQAVPAAMDGGFKIHIH
>seq0055
IVENIRKEIIEKFGEYNKVECKYIECCLKETLRLYPSVTHFSREMVKDFKLKIYTFYKGD
EIVVTTFAMGRLPWLWKNAEKFVPERFMYDQSKYVAFNISPRTCLGKNVALLEGKIAVIA
MFSQFKSFRTVPAAMDGGFNIYVE
>seq0056
IAGRDTTSQMISWFMFHLLNQSNKRNIIIDNIKNEIISVFGEYDKVQCVYLDACLKETLR
LYPSVPHFVRQMVTDLTLNIYTFEKGDEIVVFTIALGKLPWLWENADEFIPERFIYDAEI
WPAFNIAPRTCLGKNVALMEGKMALIAMFSNFKNFKTVAAPFRNGFKIFLD
>seq0057
YDLLSIFIINDKFLRDVTMNFIIAGRDTTSQMLSWFIFHLLNEDEKRNVIINNIKKEIVD
VFGEYDKVKCSYIEACLKETLRLYPSVPHFVREMVSDLTLNIYTFHKGDEVIVCTIALGK
LPWLWENANEFIPERFIYDAHIWPAFNIAPRTCLGKNVALLEGKTAIIAMFSNFKKMTTV
PAPFRNGFNIYLK
>seq0058
DITMNFIIAGRDTTSQMLSWFMFHLYNEDDKRNVIINNIKNEIISIFGEYNKVKCDYIEA
CLKETLRMYPSVPHFVREMVTDMKINIYIFEKGNEIIICTIALGKLPWLWDNANEFIPER
FIYDNHIYPAFNILPRTCLGKNVALLEGKIAIISMFSNFNKFKAVP
>seq0059
LLSWFLYLVYENGKKFIEEKILKEIEEKCPNFSELECEYLESALLETLRLYPSVHHLERT
AVEDIKLSLEQYIIREGDHIMVEAYALGRATWIWGDDALEFNPLRFYYDPSQYLAFNIAP
RICLGKHVALLEAKLVVIKLLRHFTIQPVKSAMKNGYKIILKRR
>seq0061
ERIESHDLLSLFMFTEEELQDLCLNFIIAGRDTTAENISWLMYELSKNPHVLQLVIDEIN
TLTYDNVELTYLESALLETQRLHPSVPTLNRQAKRDIKLPFTVKKGDIYMVHNYAMGRAP
WIWEDPLRFDPTRFSYEPQVFPQFNIAPRMCLGKHVAMME
>seq0062
YNLLSLFLNYTLDELRDICINFIIAGRDTTAETLTWLCVELSSHPDIVDQIRNEINQVTY
ESLEMKYTESALLETQRLHPSVPSLIRFAFQDIVLPYTIRKGDAVNVFNYAMGRSPWIWE
NPLQFHPPRFQFHPSVYPAFNIGQRLCLGRHVALMHAKVVLYHLFKHFNFKAVPAPLKNG
FQVHLQPLHPTQN

366
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/Seqs.Orig.fas.FIXED.Without_low_SP_Seq.With_Names Normal file
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>Sr_rh_Pfue_XX_Sr_rh_Pfue_Contig_17829_Len879_Cov11_OG5_126554
ISFDASVFKWGELAAHMKVVDGFADEMIAKCRYDLLSKFIISTRELRDILLNFIIAGRDT
TAQLLSWCSYELCRNPEIQSKIYDELKTYQTVKMKYLEAVLYESLRLHPSVPNMTRFATR
DIQLNNTIRKGDAVLVSNYVLGRLQKWWDNPYKFDPMRFYYKAHEYTNFNIPPRLCLGKH
VAMMEAKIGLATILKDYRMELKPGPMKNGCYINFIDRLSE
>Sr_rh_PspA_XX_Sr_rh_PspA-LKH285_9262_Len672_Cov8_OG5_126554
YDLLTKFIISTRELRDILLNFIIAGRDTTAQLLSWCSYELCLNPEIQDKVYEELSTYQSV
KMKYLEAVLYEALRLHPSVPNMSRFATRDIQLSDVIRKGDCILVSNYVLGRLHQWWENAL
QFDPMRFYYKAHEYTNFNVPPRLCLGKHVALMEAKIALATVLKDYRMELKPGPMKNGCFI
NFIDRSTK
>Sr_rh_Al01_XX_Sr_rh_Al01-LKH192_6022_Len1275_Cov17_OG5_126554
IDLLFDADKSPVLGKGIFVADGNIWKKHRAIASRMFTVRSLRDYMFEVFMDTTDAFIDKC
ELYTQCVDIYDMYNRLTLEAFTMVAFGVPLGVISFDDGQTRVRTLKKHEQIINEFANTII
QKKRKHFYDIMSLFLVSDAELRDVALNFIVAGRDTTAQLLSWFSYAMSENKGVEEKIMRE
IEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAKVDIELPDVIRKGDAIIIPTFAM
GRMPWIWKDPLKFNPDRFNFTPSQYPAFNIPPRLCLGKHVALMEAKIAIIKLFKKYKLEA
VPSVMKYGFKVKLIPR
>Sr_rh_Hg01_XX_Sr_rh_Hg01-LKH304_11955_Len555_Cov4_OG5_126554
LLSWFSYAMSENKGVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAK
VDIELPDVIRKGDAIIIPTFAMGRMPWIWKDPLKFNPDRFNFTPSQYPAFNIPPRLCLGK
HVALMEAKIAIIKLFKKYKLEAVPSVMKYGFKVNLIPR
>Sr_rh_HgpA_XX_Sr_rh_HgpA-LKH314_3374_Len948_Cov16_OG5_126554
ISFDDGQTRVRTLKKHVQIINEFANTIIQKKRKHFYDIMSLFLVSDAELRDVALNFIVAG
RDTTAQLLSWFSYAMSENKGVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPH
LIRYAKVDIELPDVIRKGDAIIIPTFAMGRMPWIWKDPLKFNPDRFNFTPSQYPAFNIPP
RLCLGKHVALMEAKIAIIKLFKKYKLEAVPSVMKYGFKVKLIPR
>Sr_rh_Nn01_XX_Sr_rh_Nn01_Contig_13892_Len1674_Cov284_OG5_126554
PYFGHNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYM
FEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTL
KKHINIINEFANEFIQKKREHLYDIMWLFLISDEELRDIALNFIIAGRDTTAQLLSWCTY
LLSENQHVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDIALPD
IIRKGDGIVVPTFAMGRMPWIWKDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEA
KIAIIKLFKKYKLEPVSSVMKNGFKVKLIPRES
>Sr_rh_Nn02_XX_Sr_rh_Nn02_Contig_13025_Len1674_Cov94_OG5_126554
PYFGHNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYM
FEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTL
KKHINIINEFANEFIQKKREHLYDIMWLFLISDEELRDIALNFIIAGRDTTAQLLSWCTY
LLSENQHVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDIALPD
IIRKGDGIVVPTFAMGRMPWIWKDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEA
KIAIIKLFKKYKLEPVSSVMKNGFKVKLIPRES
>Sr_rh_Nn10_XX_Sr_rh_Nn10_Contig_21569_Len1563_Cov139_OG5_126554
PYFGHNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYM
FEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTL
KKHINIINEFANEFIQKKREHLYDIMWLFLISDEELRDIALNFIIAGRDTTAQLLSWCTY
LLSENQHVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDIALPD
IIRKGDGIVVPTFAMGRMPWIWKDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEA
KIAIIKLFKKYKLEPVSSVMKNGFKVKLIPR
>Sr_rh_Emac_XX_Sr_rh_Emac_Contig_11467_Len1551_Cov70_OG5_126554
PYFGHHFIFVVDPALIDLLFDADKRPILGRGIFTSDGLLWKKHRSIASRMFTVRSLRDYM
FQVFRDTTDTFMSKCEICANHVDIYDMFHRLTLEAFTQVAFGVSLGVIAFDDAQTKARTL
KAHVKVINEFAERIIRSKRKDYYDIMSLFLISDQELRDMALNFIIAGRDTTAQLLSWFSY
AMTENADVESKLLAELRQAVADYDAIDCTYLENALLESLRLRPSVPHLVRYAKVDIDLPE
TIRKGNGIVIPTFAMGRMPWIWKDPLKFDPDRFNYTASQYPAFNIPPRLCLGKHVALLEA
KIAVVKLFTKYKLVPMPSVMKNGFKVKLIPRE
>Sr_rh_Al02_XX_Sr_rh_Al02-LKH279_3746_Len555_Cov10_OG5_126554
LMSWFSYAMTENEEVEKKIVEEIRLYVGDYNTINCQYLENAFLESLRMRPVLPHLVRYAK
VDIALPHVIRKGDGLIVPSFAMGRMPWIWKDPNTFNPDRFKYTPAQYPAFNIPPRLCLGK
HVALLEAKIMIIKLFKKYKLEAVPNIMKNGLKVRLIPRGK
>Sr_rh_As04_XX_Sr_rh_As04-LKH296_1295_Len732_Cov6_OG5_126554
YDLMSLFLISDDELRDVALNFILAGRDTTAQLMSWFSYAMTENEEVEKKIVEEIRLYVGD
YNTINCQYLENAFLESLRMRPVLPHLVRYAKVDIALPHVIRKGDGLIVPSFAMGRMPWIW
KDPNTFNPDRFKYTPAQYPAFNIPPRLCLGKHVALLEAKIMIIKLFKKYKLEAVPNIMKN
GLKVRLIPRGK
>Sr_rh_As01_XX_Sr_rh_As01-LKH294_6033_Len771_Cov5_OG5_126554
YDLMSLFLVSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENEEVEGKIMQEMQQFIGD
YNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDITLPDVVRKGDGIIIPTYAMGRMPWIW
KDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLEALPSVMKN
GFKVRLVPRCK
>Sr_rh_As05_XX_Sr_rh_As05-LKH295_5839_Len819_Cov11_OG5_126554
RSSSKKQHFYDLMSLFLVSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENEEVEGKIM
QEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDITLPDVVRKGDGIIIPTY
AMGRMPWIWKDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKL
DALPSVMKNGFKVRLVPRCK
>Sr_rh_As03_XX_Sr_rh_As03-LKH313_6888_Len702_Cov8_OG5_126554
YDLMSLFLVSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENEEVEGKIMQEMQQFIGD
YNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDITLPDVVRKGDGIIIPTYAMGRMPWIW
KDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLEALPSVMKN
GFKVRLVPRCK
>Sr_rh_As02_XX_Sr_rh_As02-LKH324_15814_Len489_Cov16_OG5_126554
MNQFIGNYDMLNCQYLESSFYESLRLQPSLPHLVRYAKVDIPLPDVIRKGDGVIVPMYAM
GRMPWLWKNPDKFDPERFNYTPAEYPAFNIPPRVCLGKHVALMEAKIAVIKLLKKFKLEA
LPTVMKNGFKVKLIPRCK
>Sr_rh_Ts02_XX_Sr_rh_Ts02-LKH320_6145_Len708_Cov5_OG5_126554
YDLMSLFLITDDELRDIALNFIIAGRDTTAQLLSWFSYCITDNKQIEENIMNEINQYIGD
YNVIQCEYLESSFLETLRLRPSVPHLVRYAKIDIKLPDIIRKGDGIVIPTYAMGRMPWIW
NDPLKFNPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLQPLPSIMRN
GFKVKLIPRDSK
>Sr_rh_Calb_XX_Contig_7745_Len1683_Cov38_OG5_126554
PLIGHNFIFMVSPKLIDLLFDSNKLPILGHGIFNADGQLWKKHRSIASRMFTVRSLRDYM
FNVFVDTTDKWILKSEILKNFVDIYNMNLRLTMEAFTKVAFGVDLGTIAMDDGITKLKSL
KKHSHILNDFAKKVIDDRKSYDLLSLFLVNVSELRDVCINFIVAGRDTTAQLLSWFMYEL
SNPKIEEKIMEEINEYIGEYKQIECEYLENCLLETLRLRPSVPHLVRYAKCDIELPGHII
RKGDGIVIPTYAMGRMPWIWKDPLKFNPDRFKHPPSKYPAFNIPPRLCLGKHVALLEAKI
AIVKLFKKYKLVKLPSVMKYGYKVKLEPRNQ
>Sr_rh_RspA_XX_Sr_rh_RspA-LKH290_4671_Len1062_Cov25_OG5_126554
FNDTTDDFIAKCEICEMSVNIYDMFHRLTLEAFTMVAFGVPLGVISFDEGRTKWRTLKKH
LKIINEFASNIIHKKRQQFYDLISLFMITDEELRDIALNFIIAGRDTTAQLLSWFSYLVT
ENESVESKIMNEINECVADYNMVKCEYLENAFLETLRLRPSVPHLVRYAKTDIKLPHIIR
KGDGIVIPTFAMGRMPWIWSNPLEFNPDRFKFTPAEYPAFNLPPRLCLGKHVALLEAKIA
IIKLFKKYKLEAVPSVMKYGFNVKLVPRKQET
>Sr_rh_FF02_XX_Sr_rh_FF02_Contig_1649_Len957_Cov10_OG5_126554
NMYNRLTLEAFTQVAFGVPLGCISFDRGQSKLRELRKHLKVVNEFVSKVIVERKFDLLSL
FLTSDKELRDVAMNFIVAGRDTTAQLLSWFSYLISENQECEAKVTKEIMEHVPTYEMVKC
QYLENALLETLRLRPSVPHLVRFAKVDILLPHVIRKGDGIVVPTYAMGRMPSLWKDPLKF
DPSRFEYTPSEYPAFNIPPRLCLGKHVALLESKIAIIRLFRKFKLEPLSSIMKNGFRVKL
VPR
>Sr_rh_Hind_XX_Contig_12080_Len1260_Cov53_OG5_126554
KPVFGVGILSTDGKLWKKYRSIGSRIFTVRSLRDFMYEVFDSTSSALVKKSLIQEQFVDL
YNMFNRLTLEAFTHIAFGVSMKTIAFDRSQWDFKELKKHAGILNDKIGLLVRQRKEQYKD
LLTLYFATDLELRDLIMNFVVAGRDTTAQLCSWFSYEISEHAHVDARILEEIHTYVGTYQ
MVKLKYMESCFLETLRLHPSVPHLVRFALVDIKLPHVIRKGDGVVVPVYAMGRMPWLWPK
PLVFDPMRFEYTPALFPAFNIPPRLCLGKHLALLEAKVVMVKILRKYRIVARESIMKDGF
YARLQPRAQQQQ
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_20076_Len1179_Cov40_OG5_126554
MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIIS
FDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAG
KDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHL
VRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPR
VCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19982_Len1182_Cov79_OG5_126554
MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIIS
FDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAG
KDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHL
VRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPR
VCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_20382_Len1167_Cov94_OG5_126554
MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIIS
FDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAG
KDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHL
VRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPR
VCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19888_Len1155_Cov80_OG5_126554
MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRE
LKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAGKDTTAQLLSW
FSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDIPL
PHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALL
ECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>Sr_rh_Tx01_XX_Sr_rh_Tx01_Contig_19044_Len1188_Cov38_OG5_126554
MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRE
LKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAGKDTTAQLLSW
FSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDIPL
PHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALL
ECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>Sr_rh_Slin_XX_Contig_3275_Len1587_Cov14_OG5_126554
PFFGHNFIFLCDPKLIDFVFDANKKPLLGHGIFVSDGAKWKKHRSIASHMFTVRSLREYM
FEVFVDTSNTFLDKCLIQSKEIDIYNMFNRLTLEAFTKVAFGVSLNIISFDRGQTAWREL
HIHTAIIEQQISEVIQRNVNYDLLSLFLASENELRDVAMNFIIAGRDTTAQLLSWFSYLL
TNPKVEQMIVDEINANIGDYEMVKCQYLENAFLETLRLHPSVPHLVRYAKTDIPLLNIIR
KGDCIIIPTYAMGRMPWLWNNALTFDPSRFEYSPAQYPAFNIPPRLCLGKHVALLEAKIV
IIKLLRKYRIVAIPSVMKNGFKVRLELR
>Sr_rh_FF02_XX_Sr_rh_FF02_Contig_3920_Len636_Cov5_OG5_126554
ITMNFIIAGKDTTAQLLSWFFYVITHNRSDEVISNILNEFDAQSNGYEKMKLQYLEYCLL
ETLRLFPSVPHLIRFAKSDIFRVDYTIRKGDGIVIPLYAMGRMPWIWENPDEFDPLRFQF
LPSEYPAFNIPPRLCLGKHVALMEAKIAVIKLLKKYRFVTQESPMKNGYKVKLIPK
>Sr_rh_PspA_XX_Sr_rh_PspA-LKH285_926_Len1191_Cov12_OG5_126554
LPILGRGIIASDGKIWKRHRKVASRMFTLSSLRDYMFEVFNSTTDTLMDKMLIHKDHVDL
YDMYNRLTLEAFTEVAFGVKLGVISFDRGASKFKELLFHEKTINNMVWDLVHKCKERLCD
LLSLFIITDVELRDITINFVIAGRDTTAQLLSWFSYLITWPQVEKKVLKEIKEVFPDYGK
IKLEYLENAFLETLRMHPSVPHLVREAKVDIHLPHIIRKGDGVIVPTYAMGRLPWLWEKP
EEMNPDRFQFTPSEYPAFNIPPRLCLGKHVSLMEAKIQIVKLLPKYKFEPLPSAMKNGFK
VKLVPRDTQ
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_3536_Len591_Cov9_OG5_126554
LRDVAMNFIIAGRDTTAQLLSWFMYLFTNKEIEKPILNEINSIINYIDVKLKYLENCFFE
TLRLRPAVPHLLRFAKTDIQLKYVIRKGDGICIPTFAMNRMPWIWDNPFKFDPNRFDQSP
SKYVAFNIPPRLCLGKHVALLEAKLLVLELLTRFKIEPVLSAMRNGFKVYFHPR
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_14775_Len321_Cov15_OG5_126554
YVIRKGDGICIPTFAMNRMPWIWDNPFKFDPNRFDQSPSKYVAFNIPPRLCLGKHVALLE
AKLLVLELLTRFKIEPVLSAMRNGFKVYFHPR
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_8241_Len441_Cov6_OG5_126554
IKLNYLENSFLETLRLRPSVPHLVRKAVVDIKIPHIIRKDDTILVPTYAMGRMEWIWKDA
LKFDPTRFEYSPSKYPAFNIKPRLCLGKHVALLEAKIAIVKLFKKYKFIPIESLMKNGFR
VKLIKRQT
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_5955_Len525_Cov17_OG5_126554
NQHVEDKIMDEINQHINYNTIKLNYLENSFLETLRLRPSVPHLVRKAVVDIKIPHIIRKD
DTILVPTYAMGRMEWIWKDALKFDPTRFEYSPSKYPAFNIKPRLCLGKHVALLEAKIAIV
KLFKKYKFIPIESLMKNGFRVKLIKRQTQF
>Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_6707_Len579_Cov20_OG5_126554
RVRAAQLLSWFLYEITENNEILSNINNEINEYINYDNIKLVYLENCFLETLRLRPSVPHL
VRQANVDINIPYTIRKDDTIIVPTYAMGRMDYIWENPLKFDPNRFKHSPSKYPAFNIKPR
LCLGKHVALLEAKIAIAKLFQKYKFEPIKSVMKNGFKVKVVPNIFK
>Sr_rh_Tr01_XX_Sr_rh_Tr01_Contig_9807_Len483_Cov16_OG5_126554
SINAEYGNYDNIKLIYLENCFLETLRLRPSVPHLVRQANVDIPIPYTIRKDDTIIVPTYA
MGRMDYIWENALTFDPNRFKYSPSKYPAFNIKPRLCLGKHVALLEAKIAIAKLFKKYKFE
PIKSVMKNGFKVKVVPIE
>Sr_rh_Bv04_XX_Sr_rh_Bv04_Contig_12687_Len1599_Cov64_OG5_126554
PFIGHNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKDYM
FEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYGEL
KKHEEIINKKIQDIISKRKEQYDIISIFLISDKELRDICANFILAGRDTTGQLLSWFCYE
ICENKHIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRVAKTDILIPHV
IRKGDTIIVPCYAMGRMPTIWKEPLKFDPLRFNFPPCKYPAFNIPPRLCLGKHVAIMEAK
IAIVKLFRKYELIPDTSMMKTGFRVRLKSR
>Sr_rh_Bv05_XX_Sr_rh_Bv05_Contig_10933_Len1599_Cov61_OG5_126554
PFIGHNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKDYM
FEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYGEL
KKHEEIINKKIQDIISKRKEQYDIISIFLISDKELRDICANFILAGRDTTGQLLSWFCYE
ICENKHIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRVAKTDILIPHV
IRKGDTIIVPCYAMGRMPTIWKEPLKFDPLRFNFPPCKYPAFNIPPRLCLGKHVAIMEAK
IAIVKLFRKYELIPDTSMMKTGFRVRLKSR
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_10605_Len690_Cov15_OG5_126554
KQVQYDLLSLFLMSIKELRDISMNFIIAGRDTTAQTLSWFTYELCPHVYDQIMKEIDQVI
GTYDLIKLKYLENALLETLRLHPAVPHLLRFATRDFRLPHIIRKGDGIVCAAYLMGHISH
LWDDPERFDPTRFEYDPSYFPAFNIAPRICLGKHVALLEAKIAAIKLFKKFKIIPVPAPM
KNGFKVTLHNIETD
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_18259_Len648_Cov21_OG5_126554
YDLLSLFLMSIKELRDISMNFIIAGRDTTAQTLSWFIYELSPHVQDQIMNEINHVIGDYH
LIKLKYLENALLETLRLHPAVPHLLRFATRDFRIPHIIRKGDGIVCAAYIMGHVPELWNN
PHQFDPTRFEYDPSYFPAFNIAPRLCLGKHVALLEAKIAAVKLLKKFKIIPVPAPMKNGF
KVTLECRN
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_13702_Len678_Cov20_OG5_126554
IRYDLLSLFLITEKELRDIAMNFIIAGRDTTAQTLSWFIYELTSPDVEENILKEIDSIGT
YENIKFKYLENALLETLRMHPAVPHLVRYATRDILLRNIVRKGDGIVVGAYVMGHIPWLW
PDPERFDPTRFEYDPCYFPVFNVAPRLCLGKHVALLEAKIAAVKLLKKYRIEAIKAPMRY
GFKVKLHPRL
>Sr_rh_As01_XX_Sr_rh_As01-LKH294_2597_Len693_Cov4_OG5_126554
YDLLSMFIITDQELRDITFSFIIAGKDTTAQMLSWFMYHIHNLQHIFDGVRKEIKEVFGE
YDKVKCSFIECCLKESLRLYPSVPHLVRTAVKDMKLPYTLRKGDELFVSTFAMGRMPWIW
KDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMG
AG
>Sr_rh_As03_XX_Sr_rh_As03-LKH313_10378_Len717_Cov12_OG5_126554
YDLLSMFIITDQELRDITFSFIIAGKDTTAQMLSWFMYHIHNLQHIFDGVRKEIKEVFGE
YDKVKCSFIECCLKESLRLYPSVPHLVRTAVKDMKLPYTLRKGDELFVSTFAMGRMPWIW
KDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMG
AGFQAHLQK
>Sr_rh_As05_XX_Sr_rh_As05-LKH295_19507_Len444_Cov9_OG5_126554
KVKCSFIECCLKESLRLYPSVPHLVRTAVKDMKLPYTLRKGDELFVSTFAMGRMPWIWKD
PLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAG
FQAHLQK
>Sr_rh_As02_XX_Sr_rh_As02-LKH324_14147_Len456_Cov8_OG5_126554
EYEKVKCRYIECCLKESLRLYPSVPHLVRTAVKDIKLPYTVRPGDEVFVSAYAMGRMPWV
WEDPLEFKPERFQPDPSMYPAFNIAPRICLGRHVALLEGKIAIIKLFTKYKSITAVQSPM
GAGFQAHLQK
>Sr_rh_Emar_XX_Contig_8285_Len723_Cov12_OG5_126554
FDLISMFIITDEELRDITFSFIIAGKDTTAQMLSWLMYHLHKLQQVMDNIRAEIRRVFGD
YEKVQCQYIECCLKESLRLYPSVPYLVRTPVKDIATHYVIRKGDEVMVAAYSMARMPWLW
DDPLAFKPERFMYDPSLYPAFNIAPRICLGRHVALMEGKIAVIKLFSKYKNITAVKSPME
TGFKAHLNVR
>Sr_rh_Hg01_XX_Sr_rh_Hg01-LKH304_7769_Len600_Cov7_OG5_126554
INFIIAGKDTTAQMLSWFFYHINNLYDIERKMRDEIEEIFGTYEKVKCDYIECCLNETLR
LYPSVPHLVRTAVKDIRTPYVIRKGDEIFISAWSMGRAPWIWDEPLQFKPERFMIDPSRF
PAFNVAPRICLGKHVALLEGKLALIKIFKKYKHISAVPGPMKVGFKVRMRKE
>Sr_rh_Hind_XX_Contig_2010_Len1647_Cov26_OG5_126554
PFVGHHRIFITNPKIAKQLFDAIKRELLGDGIFATNGQRWREHRAIASHMFTVRSLRDYM
FDVFCYTTDQLLDKLEMTVDDVNIYDMYNRLTFEAFTKIAFGVDVGEIRFDRAELRKKEM
RSHIDWIEDYIYKVIANRRAYYYDLLSMFLISDKELRDITVNFIIAGKDTTAQMLSWFTY
HLHKLIEVENKIRAEITKVFGNYKQVQCTYLECCFLESLRLYPSVPHLARAAVVDIETYY
TIRAGDEVLICPLSMSRLEWIWPNAEQFIPERFAFDPWVYPAFNIPPRLCLGKHVALLEG
KIALIKLFSRFSSIVRSDAPMPHGYKVHLRKRVEP
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_6436_Len489_Cov15_OG5_126554
IKNIFGKYEDVKCNYIEACLYESLRLYPSVPNLVRTAIEDIKLPHTIRKGEEIVISTYSM
GRSKYIWEDPMKFNPERFIYEPWVYPAFNLKPRLCLGKHVAILEGKIAIIKLFSQFQSIQ
AFQSAMKNGLKVVLK
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_6395_Len597_Cov13_OG5_126554
IAGRDTTSQMLSWFMFHLTKNDGMDLIEKNIRNEIKNIFGKYEDVKCNYIEACLYESLRL
YPSVPNLVRTAIEDIKLPHTIRKGEEIVISTYSMGRSKYIWEDPMKFNPERFIYEPWVYP
AFNLKPRLCLGKHVAILEGKIAIIKLFSQFQSIQAFQSAMKNGLKVVLK
>Sr_rh_Sspa_XX_Contig_5747_Len702_Cov21_OG5_126554
YDLLSMFIISDRQLRDITMNFIIAGRDTTSQMLSWFMYHLTNSDMKTIESNIRNEIKTIF
GTYDDVKCNYIEACLLESLRLYPSVPNLVRTAIEDIQTPYTIRKNDEIMISTYSIGRSKY
IWKDPLTFNPERFLYDPSVYPAFNLKPRLCLGKHVALMEGKIAIIKLFNKFKTIKCVPSA
MKNGWKVTLE
>Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_256_Len708_Cov14_OG5_126554
YDLLSMFIISDDELRDITMNFIIAGRDTTSHMLSWFLFHLTQNDGMSDIEKKIRNEIDNI
FGSYEKVKCEYIEACLYETLRLYPSVPHLLRTAVEDIKTKYTIRKGDDIVISAYAMGRSK
YIWDKPLKFDANRFIYDASVYPAFNIQPRLCLGKHVAILEGKIALIKLFSRFKTIKCLPS
AMKNGWKLDLK
>Sr_rh_QjpA_XX_Sr_rh_QjpA-LKH288_9889_Len564_Cov19_OG5_126554
MLSWFYFHLTQNDGMSEIEKNIRNEIDNIFGSYENVKCEYIEACLYETLRLYPSVPHLLR
TAVEDIKTKYTIRKGDDIVISAYAMGRSKYIWDDPLKFDANRFIYDASVYPAFNIQPRLC
LGKHVAILEGKIALIKLFTKFKNIKCLPSAMKNGWKLDLK
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_13181_Len408_Cov3_OG5_126554
VECKYIECCLKETLRLYPSVPHFSREMVKDFKVKIYTFYKGDEIIITTFPLGRLPWLWEN
ADKFIPERFMYDNSQYPAFNIAPRTCLGKNVALLEGKIAVVAMFTNFKSFQAVPAAM
>Sr_rh_Mf03_XX_Sr_rh_Mf03-LKH281_6167_Len516_Cov7_OG5_126554
IVENIRKEIIQKFGDYDKVECKYIECCLKETLRLYPSVPHFSREMVKDFKVKIYTFYKGD
EIIITTFPLGRLPWLWGNADKFIPERFMYDNSQYPAFNIAPRTCLGKNVALLEGKIAVVA
MFTNFKSFQAVPAAMDGGFKIHIH
>Sr_rh_Mf02_XX_Sr_rh_Mf02-LKH282_190_Len516_Cov4_OG5_126554
IVENIRKEIIEKFGEYNKVECKYIECCLKETLRLYPSVTHFSREMVKDFKLKIYTFYKGD
EIVVTTFAMGRLPWLWKNAEKFVPERFMYDQSKYVAFNISPRTCLGKNVALLEGKIAVIA
MFSQFKSFRTVPAAMDGGFNIYVE
>Sr_rh_Qj01_XX_Sr_rh_Qj01-LKH287_6601_Len603_Cov10_OG5_126554
IAGRDTTSQMISWFMFHLLNQSNKRNIIIDNIKNEIISVFGEYDKVQCVYLDACLKETLR
LYPSVPHFVRQMVTDLTLNIYTFEKGDEIVVFTIALGKLPWLWENADEFIPERFIYDAEI
WPAFNIAPRTCLGKNVALMEGKMALIAMFSNFKNFKTVAAPFRNGFKIFLD
>Sr_rh_Tr01_XX_Sr_rh_Tr01_Contig_5346_Len690_Cov14_OG5_126554
YDLLSIFIINDKFLRDVTMNFIIAGRDTTSQMLSWFIFHLLNEDEKRNVIINNIKKEIVD
VFGEYDKVKCSYIEACLKETLRLYPSVPHFVREMVSDLTLNIYTFHKGDEVIVCTIALGK
LPWLWENANEFIPERFIYDAHIWPAFNIAPRTCLGKNVALLEGKTAIIAMFSNFKKMTTV
PAPFRNGFNIYLK
>Sr_rh_Tr02_XX_Sr_rh_Tr02_Contig_17503_Len567_Cov70_OG5_126554
DITMNFIIAGRDTTSQMLSWFMFHLYNEDDKRNVIINNIKNEIISIFGEYNKVKCDYIEA
CLKETLRMYPSVPHFVREMVTDMKINIYIFEKGNEIIICTIALGKLPWLWDNANEFIPER
FIYDNHIYPAFNILPRTCLGKNVALLEGKIAIISMFSNFNKFKAVP
>Sr_rh_FF02_XX_Sr_rh_FF02_Contig_5686_Len600_Cov5_OG5_126554
LLSWFLYLVYENGKKFIEEKILKEIEEKCPNFSELECEYLESALLETLRLYPSVHHLERT
AVEDIKLSLEQYIIREGDHIMVEAYALGRATWIWGDDALEFNPLRFYYDPSQYLAFNIAP
RICLGKHVALLEAKLVVIKLLRHFTIQPVKSAMKNGYKIILKRR
>Sr_rh_Pfue_XX_Sr_rh_Pfue_Contig_20190_Len552_Cov3_OG5_126554
ERIESHDLLSLFMFTEEELQDLCLNFIIAGRDTTAENISWLMYELSKNPHVLQLVIDEIN
TLTYDNVELTYLESALLETQRLHPSVPTLNRQAKRDIKLPFTVKKGDIYMVHNYAMGRAP
WIWEDPLRFDPTRFSYEPQVFPQFNIAPRMCLGKHVAMME
>Sr_rh_Ti04_XX_Sr_rh_Ti04-LKH210_13699_Len690_Cov51_OG5_126554
YNLLSLFLNYTLDELRDICINFIIAGRDTTAETLTWLCVELSSHPDIVDQIRNEINQVTY
ESLEMKYTESALLETQRLHPSVPSLIRFAFQDIVLPYTIRKGDAVNVFNYAMGRSPWIWE
NPLQFHPPRFQFHPSVYPAFNIGQRLCLGRHVALMHAKVVLYHLFKHFNFKAVPAPLKNG
FQVHLQPLHPTQN

386
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/Seqs.numberd.fas Normal file
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@ -0,0 +1,386 @@
>seq0000
ISFDASVFKWGELAAHMKVVDGFADEMIAKCRYDLLSKFIISTRELRDILLNFIIAGRDT
TAQLLSWCSYELCRNPEIQSKIYDELKTYQTVKMKYLEAVLYESLRLHPSVPNMTRFATR
DIQLNNTIRKGDAVLVSNYVLGRLQKWWDNPYKFDPMRFYYKAHEYTNFNIPPRLCLGKH
VAMMEAKIGLATILKDYRMELKPGPMKNGCYINFIDRLSE
>seq0001
YDLLTKFIISTRELRDILLNFIIAGRDTTAQLLSWCSYELCLNPEIQDKVYEELSTYQSV
KMKYLEAVLYEALRLHPSVPNMSRFATRDIQLSDVIRKGDCILVSNYVLGRLHQWWENAL
QFDPMRFYYKAHEYTNFNVPPRLCLGKHVALMEAKIALATVLKDYRMELKPGPMKNGCFI
NFIDRSTK
>seq0002
IDLLFDADKSPVLGKGIFVADGNIWKKHRAIASRMFTVRSLRDYMFEVFMDTTDAFIDKC
ELYTQCVDIYDMYNRLTLEAFTMVAFGVPLGVISFDDGQTRVRTLKKHEQIINEFANTII
QKKRKHFYDIMSLFLVSDAELRDVALNFIVAGRDTTAQLLSWFSYAMSENKGVEEKIMRE
IEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAKVDIELPDVIRKGDAIIIPTFAM
GRMPWIWKDPLKFNPDRFNFTPSQYPAFNIPPRLCLGKHVALMEAKIAIIKLFKKYKLEA
VPSVMKYGFKVKLIPR
>seq0003
LLSWFSYAMSENKGVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPHLIRYAK
VDIELPDVIRKGDAIIIPTFAMGRMPWIWKDPLKFNPDRFNFTPSQYPAFNIPPRLCLGK
HVALMEAKIAIIKLFKKYKLEAVPSVMKYGFKVNLIPR
>seq0004
ISFDDGQTRVRTLKKHVQIINEFANTIIQKKRKHFYDIMSLFLVSDAELRDVALNFIVAG
RDTTAQLLSWFSYAMSENKGVEEKIMREIEQHIGNYNSIQCKYLENALLESLRLRPSVPH
LIRYAKVDIELPDVIRKGDAIIIPTFAMGRMPWIWKDPLKFNPDRFNFTPSQYPAFNIPP
RLCLGKHVALMEAKIAIIKLFKKYKLEAVPSVMKYGFKVKLIPR
>seq0005
PYFGHNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYM
FEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTL
KKHINIINEFANEFIQKKREHLYDIMWLFLISDEELRDIALNFIIAGRDTTAQLLSWCTY
LLSENQHVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDIALPD
IIRKGDGIVVPTFAMGRMPWIWKDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEA
KIAIIKLFKKYKLEPVSSVMKNGFKVKLIPRES
>seq0006
PYFGHNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYM
FEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTL
KKHINIINEFANEFIQKKREHLYDIMWLFLISDEELRDIALNFIIAGRDTTAQLLSWCTY
LLSENQHVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDIALPD
IIRKGDGIVVPTFAMGRMPWIWKDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEA
KIAIIKLFKKYKLEPVSSVMKNGFKVKLIPRES
>seq0007
PYFGHNFIFVVDPKIVDLLFNADKRPILGKGIFISDGNIWKKHRAIASRMFTVRSLRDYM
FEVFNDTTDTFVAKCEICTTCVDMYDMYNRLTLEAFTMVAFGVQLGVISFDAAQTKARTL
KKHINIINEFANEFIQKKREHLYDIMWLFLISDEELRDIALNFIIAGRDTTAQLLSWCTY
LLSENQHVYRKIMQEMDQHIGDFNAIHCKYLEKCFLESLRLRPSVPHLVRYAKVDIALPD
IIRKGDGIVVPTFAMGRMPWIWKDPLKFNPDRFNYTPSQYPAFNIPPRLCLGKHVALLEA
KIAIIKLFKKYKLEPVSSVMKNGFKVKLIPR
>seq0008
PYFGHHFIFVVDPALIDLLFDADKRPILGRGIFTSDGLLWKKHRSIASRMFTVRSLRDYM
FQVFRDTTDTFMSKCEICANHVDIYDMFHRLTLEAFTQVAFGVSLGVIAFDDAQTKARTL
KAHVKVINEFAERIIRSKRKDYYDIMSLFLISDQELRDMALNFIIAGRDTTAQLLSWFSY
AMTENADVESKLLAELRQAVADYDAIDCTYLENALLESLRLRPSVPHLVRYAKVDIDLPE
TIRKGNGIVIPTFAMGRMPWIWKDPLKFDPDRFNYTASQYPAFNIPPRLCLGKHVALLEA
KIAVVKLFTKYKLVPMPSVMKNGFKVKLIPRE
>seq0009
LMSWFSYAMTENEEVEKKIVEEIRLYVGDYNTINCQYLENAFLESLRMRPVLPHLVRYAK
VDIALPHVIRKGDGLIVPSFAMGRMPWIWKDPNTFNPDRFKYTPAQYPAFNIPPRLCLGK
HVALLEAKIMIIKLFKKYKLEAVPNIMKNGLKVRLIPRGK
>seq0010
YDLMSLFLISDDELRDVALNFILAGRDTTAQLMSWFSYAMTENEEVEKKIVEEIRLYVGD
YNTINCQYLENAFLESLRMRPVLPHLVRYAKVDIALPHVIRKGDGLIVPSFAMGRMPWIW
KDPNTFNPDRFKYTPAQYPAFNIPPRLCLGKHVALLEAKIMIIKLFKKYKLEAVPNIMKN
GLKVRLIPRGK
>seq0011
YDLMSLFLVSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENEEVEGKIMQEMQQFIGD
YNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDITLPDVVRKGDGIIIPTYAMGRMPWIW
KDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLEALPSVMKN
GFKVRLVPRCK
>seq0012
RSSSKKQHFYDLMSLFLVSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENEEVEGKIM
QEMQQFIGDYNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDITLPDVVRKGDGIIIPTY
AMGRMPWIWKDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKL
DALPSVMKNGFKVRLVPRCK
>seq0013
YDLMSLFLVSDDELRDVALNFIIAGRDTTAQLLSWFSYAITENEEVEGKIMQEMQQFIGD
YNNVNCQYLESAFLESLRLRPSVPHLVRYAKVDITLPDVVRKGDGIIIPTYAMGRMPWIW
KDPLKFDPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLEALPSVMKN
GFKVRLVPRCK
>seq0014
MNQFIGNYDMLNCQYLESSFYESLRLQPSLPHLVRYAKVDIPLPDVIRKGDGVIVPMYAM
GRMPWLWKNPDKFDPERFNYTPAEYPAFNIPPRVCLGKHVALMEAKIAVIKLLKKFKLEA
LPTVMKNGFKVKLIPRCK
>seq0015
YDLMSLFLITDDELRDIALNFIIAGRDTTAQLLSWFSYCITDNKQIEENIMNEINQYIGD
YNVIQCEYLESSFLETLRLRPSVPHLVRYAKIDIKLPDIIRKGDGIVIPTYAMGRMPWIW
NDPLKFNPDRFNYSPSQYPAFNIPPRLCLGKHVALLEAKIAIIKLFKKYKLQPLPSIMRN
GFKVKLIPRDSK
>seq0016
PLIGHNFIFMVSPKLIDLLFDSNKLPILGHGIFNADGQLWKKHRSIASRMFTVRSLRDYM
FNVFVDTTDKWILKSEILKNFVDIYNMNLRLTMEAFTKVAFGVDLGTIAMDDGITKLKSL
KKHSHILNDFAKKVIDDRKSYDLLSLFLVNVSELRDVCINFIVAGRDTTAQLLSWFMYEL
SNPKIEEKIMEEINEYIGEYKQIECEYLENCLLETLRLRPSVPHLVRYAKCDIELPGHII
RKGDGIVIPTYAMGRMPWIWKDPLKFNPDRFKHPPSKYPAFNIPPRLCLGKHVALLEAKI
AIVKLFKKYKLVKLPSVMKYGYKVKLEPRNQ
>seq0017
FNDTTDDFIAKCEICEMSVNIYDMFHRLTLEAFTMVAFGVPLGVISFDEGRTKWRTLKKH
LKIINEFASNIIHKKRQQFYDLISLFMITDEELRDIALNFIIAGRDTTAQLLSWFSYLVT
ENESVESKIMNEINECVADYNMVKCEYLENAFLETLRLRPSVPHLVRYAKTDIKLPHIIR
KGDGIVIPTFAMGRMPWIWSNPLEFNPDRFKFTPAEYPAFNLPPRLCLGKHVALLEAKIA
IIKLFKKYKLEAVPSVMKYGFNVKLVPRKQET
>seq0018
NMYNRLTLEAFTQVAFGVPLGCISFDRGQSKLRELRKHLKVVNEFVSKVIVERKFDLLSL
FLTSDKELRDVAMNFIVAGRDTTAQLLSWFSYLISENQECEAKVTKEIMEHVPTYEMVKC
QYLENALLETLRLRPSVPHLVRFAKVDILLPHVIRKGDGIVVPTYAMGRMPSLWKDPLKF
DPSRFEYTPSEYPAFNIPPRLCLGKHVALLESKIAIIRLFRKFKLEPLSSIMKNGFRVKL
VPR
>seq0019
KPVFGVGILSTDGKLWKKYRSIGSRIFTVRSLRDFMYEVFDSTSSALVKKSLIQEQFVDL
YNMFNRLTLEAFTHIAFGVSMKTIAFDRSQWDFKELKKHAGILNDKIGLLVRQRKEQYKD
LLTLYFATDLELRDLIMNFVVAGRDTTAQLCSWFSYEISEHAHVDARILEEIHTYVGTYQ
MVKLKYMESCFLETLRLHPSVPHLVRFALVDIKLPHVIRKGDGVVVPVYAMGRMPWLWPK
PLVFDPMRFEYTPALFPAFNIPPRLCLGKHLALLEAKVVMVKILRKYRIVARESIMKDGF
YARLQPRAQQQQ
>seq0020
MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIIS
FDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAG
KDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHL
VRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPR
VCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>seq0021
MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIIS
FDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAG
KDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHL
VRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPR
VCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>seq0022
MFTVRALRDYMFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIIS
FDRGQTRWRELKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAG
KDTTAQLLSWFSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHL
VRYAKVDIPLPHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPR
VCLGKHVALLECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>seq0023
MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRE
LKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAGKDTTAQLLSW
FSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDIPL
PHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALL
ECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>seq0024
MFEVFVNTSNIFLDKCCLQTQYFDIYNMYNRLTLEAFAQVAFGMPLDIISFDRGQTRWRE
LKTHEKIMDELVKKVVKRCKTYYGNYDLLSLFLASYKELKDVTMNFIMAGKDTTAQLLSW
FSWSLTNPEVEQRIVDEIHTYVGDYQIVKCQYLENALLESLRLNPSVPHLVRYAKVDIPL
PHVIRKGDGIVVPTYAMGRMAWLWPNPTKFDPTRFEFTPAVYPAFNLPPRVCLGKHVALL
ECKIVMIKLLRRFRIVACESAMKHGFKVRFEPREESAK
>seq0025
PFFGHNFIFLCDPKLIDLIFDAEKKPMLGHGIFLSDGARWKKQRSIASRMFTVRSLRDYM
FEVFVDTSNTFIDKCLIQSEEIDIYDMFNRLTLEAFTEVAFGVSLNIMSFDRGQ
>seq0026
PFFGHNFIFLCDPKLIDFVFDANKKPLLGHGIFVSDGAKWKKHRSIASHMFTVRSLREYM
FEVFVDTSNTFLDKCLIQSKEIDIYNMFNRLTLEAFTKVAFGVSLNIISFDRGQTAWREL
HIHTAIIEQQISEVIQRNVNYDLLSLFLASENELRDVAMNFIIAGRDTTAQLLSWFSYLL
TNPKVEQMIVDEINANIGDYEMVKCQYLENAFLETLRLHPSVPHLVRYAKTDIPLLNIIR
KGDCIIIPTYAMGRMPWLWNNALTFDPSRFEYSPAQYPAFNIPPRLCLGKHVALLEAKIV
IIKLLRKYRIVAIPSVMKNGFKVRLELR
>seq0027
ITMNFIIAGKDTTAQLLSWFFYVITHNRSDEVISNILNEFDAQSNGYEKMKLQYLEYCLL
ETLRLFPSVPHLIRFAKSDIFRVDYTIRKGDGIVIPLYAMGRMPWIWENPDEFDPLRFQF
LPSEYPAFNIPPRLCLGKHVALMEAKIAVIKLLKKYRFVTQESPMKNGYKVKLIPK
>seq0028
LPILGRGIIASDGKIWKRHRKVASRMFTLSSLRDYMFEVFNSTTDTLMDKMLIHKDHVDL
YDMYNRLTLEAFTEVAFGVKLGVISFDRGASKFKELLFHEKTINNMVWDLVHKCKERLCD
LLSLFIITDVELRDITINFVIAGRDTTAQLLSWFSYLITWPQVEKKVLKEIKEVFPDYGK
IKLEYLENAFLETLRMHPSVPHLVREAKVDIHLPHIIRKGDGVIVPTYAMGRLPWLWEKP
EEMNPDRFQFTPSEYPAFNIPPRLCLGKHVSLMEAKIQIVKLLPKYKFEPLPSAMKNGFK
VKLVPRDTQ
>seq0029
LRDVAMNFIIAGRDTTAQLLSWFMYLFTNKEIEKPILNEINSIINYIDVKLKYLENCFFE
TLRLRPAVPHLLRFAKTDIQLKYVIRKGDGICIPTFAMNRMPWIWDNPFKFDPNRFDQSP
SKYVAFNIPPRLCLGKHVALLEAKLLVLELLTRFKIEPVLSAMRNGFKVYFHPR
>seq0030
YVIRKGDGICIPTFAMNRMPWIWDNPFKFDPNRFDQSPSKYVAFNIPPRLCLGKHVALLE
AKLLVLELLTRFKIEPVLSAMRNGFKVYFHPR
>seq0031
IKLNYLENSFLETLRLRPSVPHLVRKAVVDIKIPHIIRKDDTILVPTYAMGRMEWIWKDA
LKFDPTRFEYSPSKYPAFNIKPRLCLGKHVALLEAKIAIVKLFKKYKFIPIESLMKNGFR
VKLIKRQT
>seq0032
NQHVEDKIMDEINQHINYNTIKLNYLENSFLETLRLRPSVPHLVRKAVVDIKIPHIIRKD
DTILVPTYAMGRMEWIWKDALKFDPTRFEYSPSKYPAFNIKPRLCLGKHVALLEAKIAIV
KLFKKYKFIPIESLMKNGFRVKLIKRQTQF
>seq0033
RVRAAQLLSWFLYEITENNEILSNINNEINEYINYDNIKLVYLENCFLETLRLRPSVPHL
VRQANVDINIPYTIRKDDTIIVPTYAMGRMDYIWENPLKFDPNRFKHSPSKYPAFNIKPR
LCLGKHVALLEAKIAIAKLFQKYKFEPIKSVMKNGFKVKVVPNIFK
>seq0034
SINAEYGNYDNIKLIYLENCFLETLRLRPSVPHLVRQANVDIPIPYTIRKDDTIIVPTYA
MGRMDYIWENALTFDPNRFKYSPSKYPAFNIKPRLCLGKHVALLEAKIAIAKLFKKYKFE
PIKSVMKNGFKVKVVPIE
>seq0035
PFIGHNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKDYM
FEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYGEL
KKHEEIINKKIQDIISKRKEQYDIISIFLISDKELRDICANFILAGRDTTGQLLSWFCYE
ICENKHIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRVAKTDILIPHV
IRKGDTIIVPCYAMGRMPTIWKEPLKFDPLRFNFPPCKYPAFNIPPRLCLGKHVAIMEAK
IAIVKLFRKYELIPDTSMMKTGFRVRLKSR
>seq0036
PFIGHNYLFISDVKLIDYIFDAEKEPLTGDGIFASDGKLWKHHRSTASKMFTLRSLKDYM
FEIFNDSTDAFLDKITLNDRYINIYDMFHRLTLEAFTQAALGINLGVISFDFVHINYGEL
KKHEEIINKKIQDIISKRKEQYDIISIFLISDKELRDICANFILAGRDTTGQLLSWFCYE
ICENKHIVNKIIEEIDEHIGSYQQVKMEYLENALLECLRLRPSVPHLVRVAKTDILIPHV
IRKGDTIIVPCYAMGRMPTIWKEPLKFDPLRFNFPPCKYPAFNIPPRLCLGKHVAIMEAK
IAIVKLFRKYELIPDTSMMKTGFRVRLKSR
>seq0037
KQVQYDLLSLFLMSIKELRDISMNFIIAGRDTTAQTLSWFTYELCPHVYDQIMKEIDQVI
GTYDLIKLKYLENALLETLRLHPAVPHLLRFATRDFRLPHIIRKGDGIVCAAYLMGHISH
LWDDPERFDPTRFEYDPSYFPAFNIAPRICLGKHVALLEAKIAAIKLFKKFKIIPVPAPM
KNGFKVTLHNIETD
>seq0038
YDLLSLFLMSIKELRDISMNFIIAGRDTTAQTLSWFIYELSPHVQDQIMNEINHVIGDYH
LIKLKYLENALLETLRLHPAVPHLLRFATRDFRIPHIIRKGDGIVCAAYIMGHVPELWNN
PHQFDPTRFEYDPSYFPAFNIAPRLCLGKHVALLEAKIAAVKLLKKFKIIPVPAPMKNGF
KVTLECRN
>seq0039
IRYDLLSLFLITEKELRDIAMNFIIAGRDTTAQTLSWFIYELTSPDVEENILKEIDSIGT
YENIKFKYLENALLETLRMHPAVPHLVRYATRDILLRNIVRKGDGIVVGAYVMGHIPWLW
PDPERFDPTRFEYDPCYFPVFNVAPRLCLGKHVALLEAKIAAVKLLKKYRIEAIKAPMRY
GFKVKLHPRL
>seq0040
PFIGHIKNFIFIVDPKIIDLLFDKRPMFGDGIFSSDGNIWKKHRALASRMFTLRSLRDYM
FKSFCSTTDEFINKLSVDIYDMYNRLTLEAFTYVAFGTNLGAISQAPEELEFTSFDKICK
RFFDPIKM
>seq0041
YDLLSMFIITDQELRDITFSFIIAGKDTTAQMLSWFMYHIHNLQHIFDGVRKEIKEVFGE
YDKVKCSFIECCLKESLRLYPSVPHLVRTAVKDMKLPYTLRKGDELFVSTFAMGRMPWIW
KDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMG
AG
>seq0042
YDLLSMFIITDQELRDITFSFIIAGKDTTAQMLSWFMYHIHNLQHIFDGVRKEIKEVFGE
YDKVKCSFIECCLKESLRLYPSVPHLVRTAVKDMKLPYTLRKGDELFVSTFAMGRMPWIW
KDPLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMG
AGFQAHLQK
>seq0043
KVKCSFIECCLKESLRLYPSVPHLVRTAVKDMKLPYTLRKGDELFVSTFAMGRMPWIWKD
PLEFKPERFAPDPSVYPAFNIAPRICLGRHVALLEGKIAIIKLFTKFKSITAVKSPMGAG
FQAHLQK
>seq0044
EYEKVKCRYIECCLKESLRLYPSVPHLVRTAVKDIKLPYTVRPGDEVFVSAYAMGRMPWV
WEDPLEFKPERFQPDPSMYPAFNIAPRICLGRHVALLEGKIAIIKLFTKYKSITAVQSPM
GAGFQAHLQK
>seq0045
FDLISMFIITDEELRDITFSFIIAGKDTTAQMLSWLMYHLHKLQQVMDNIRAEIRRVFGD
YEKVQCQYIECCLKESLRLYPSVPYLVRTPVKDIATHYVIRKGDEVMVAAYSMARMPWLW
DDPLAFKPERFMYDPSLYPAFNIAPRICLGRHVALMEGKIAVIKLFSKYKNITAVKSPME
TGFKAHLNVR
>seq0046
INFIIAGKDTTAQMLSWFFYHINNLYDIERKMRDEIEEIFGTYEKVKCDYIECCLNETLR
LYPSVPHLVRTAVKDIRTPYVIRKGDEIFISAWSMGRAPWIWDEPLQFKPERFMIDPSRF
PAFNVAPRICLGKHVALLEGKLALIKIFKKYKHISAVPGPMKVGFKVRMRKE
>seq0047
PFVGHHRIFITNPKIAKQLFDAIKRELLGDGIFATNGQRWREHRAIASHMFTVRSLRDYM
FDVFCYTTDQLLDKLEMTVDDVNIYDMYNRLTFEAFTKIAFGVDVGEIRFDRAELRKKEM
RSHIDWIEDYIYKVIANRRAYYYDLLSMFLISDKELRDITVNFIIAGKDTTAQMLSWFTY
HLHKLIEVENKIRAEITKVFGNYKQVQCTYLECCFLESLRLYPSVPHLARAAVVDIETYY
TIRAGDEVLICPLSMSRLEWIWPNAEQFIPERFAFDPWVYPAFNIPPRLCLGKHVALLEG
KIALIKLFSRFSSIVRSDAPMPHGYKVHLRKRVEP
>seq0048
IKNIFGKYEDVKCNYIEACLYESLRLYPSVPNLVRTAIEDIKLPHTIRKGEEIVISTYSM
GRSKYIWEDPMKFNPERFIYEPWVYPAFNLKPRLCLGKHVAILEGKIAIIKLFSQFQSIQ
AFQSAMKNGLKVVLK
>seq0049
IAGRDTTSQMLSWFMFHLTKNDGMDLIEKNIRNEIKNIFGKYEDVKCNYIEACLYESLRL
YPSVPNLVRTAIEDIKLPHTIRKGEEIVISTYSMGRSKYIWEDPMKFNPERFIYEPWVYP
AFNLKPRLCLGKHVAILEGKIAIIKLFSQFQSIQAFQSAMKNGLKVVLK
>seq0050
YDLLSMFIISDRQLRDITMNFIIAGRDTTSQMLSWFMYHLTNSDMKTIESNIRNEIKTIF
GTYDDVKCNYIEACLLESLRLYPSVPNLVRTAIEDIQTPYTIRKNDEIMISTYSIGRSKY
IWKDPLTFNPERFLYDPSVYPAFNLKPRLCLGKHVALMEGKIAIIKLFNKFKTIKCVPSA
MKNGWKVTLE
>seq0051
YDLLSMFIISDDELRDITMNFIIAGRDTTSHMLSWFLFHLTQNDGMSDIEKKIRNEIDNI
FGSYEKVKCEYIEACLYETLRLYPSVPHLLRTAVEDIKTKYTIRKGDDIVISAYAMGRSK
YIWDKPLKFDANRFIYDASVYPAFNIQPRLCLGKHVAILEGKIALIKLFSRFKTIKCLPS
AMKNGWKLDLK
>seq0052
MLSWFYFHLTQNDGMSEIEKNIRNEIDNIFGSYENVKCEYIEACLYETLRLYPSVPHLLR
TAVEDIKTKYTIRKGDDIVISAYAMGRSKYIWDDPLKFDANRFIYDASVYPAFNIQPRLC
LGKHVAILEGKIALIKLFTKFKNIKCLPSAMKNGWKLDLK
>seq0053
VECKYIECCLKETLRLYPSVPHFSREMVKDFKVKIYTFYKGDEIIITTFPLGRLPWLWEN
ADKFIPERFMYDNSQYPAFNIAPRTCLGKNVALLEGKIAVVAMFTNFKSFQAVPAAM
>seq0054
IVENIRKEIIQKFGDYDKVECKYIECCLKETLRLYPSVPHFSREMVKDFKVKIYTFYKGD
EIIITTFPLGRLPWLWGNADKFIPERFMYDNSQYPAFNIAPRTCLGKNVALLEGKIAVVA
MFTNFKSFQAVPAAMDGGFKIHIH
>seq0055
IVENIRKEIIEKFGEYNKVECKYIECCLKETLRLYPSVTHFSREMVKDFKLKIYTFYKGD
EIVVTTFAMGRLPWLWKNAEKFVPERFMYDQSKYVAFNISPRTCLGKNVALLEGKIAVIA
MFSQFKSFRTVPAAMDGGFNIYVE
>seq0056
IAGRDTTSQMISWFMFHLLNQSNKRNIIIDNIKNEIISVFGEYDKVQCVYLDACLKETLR
LYPSVPHFVRQMVTDLTLNIYTFEKGDEIVVFTIALGKLPWLWENADEFIPERFIYDAEI
WPAFNIAPRTCLGKNVALMEGKMALIAMFSNFKNFKTVAAPFRNGFKIFLD
>seq0057
YDLLSIFIINDKFLRDVTMNFIIAGRDTTSQMLSWFIFHLLNEDEKRNVIINNIKKEIVD
VFGEYDKVKCSYIEACLKETLRLYPSVPHFVREMVSDLTLNIYTFHKGDEVIVCTIALGK
LPWLWENANEFIPERFIYDAHIWPAFNIAPRTCLGKNVALLEGKTAIIAMFSNFKKMTTV
PAPFRNGFNIYLK
>seq0058
DITMNFIIAGRDTTSQMLSWFMFHLYNEDDKRNVIINNIKNEIISIFGEYNKVKCDYIEA
CLKETLRMYPSVPHFVREMVTDMKINIYIFEKGNEIIICTIALGKLPWLWDNANEFIPER
FIYDNHIYPAFNILPRTCLGKNVALLEGKIAIISMFSNFNKFKAVP
>seq0059
LLSWFLYLVYENGKKFIEEKILKEIEEKCPNFSELECEYLESALLETLRLYPSVHHLERT
AVEDIKLSLEQYIIREGDHIMVEAYALGRATWIWGDDALEFNPLRFYYDPSQYLAFNIAP
RICLGKHVALLEAKLVVIKLLRHFTIQPVKSAMKNGYKIILKRR
>seq0060
QNVVFISDPVQTKYIYDRRPMFGHGIFVSDGHEWRKQRKIASRLFTMRNLKHYMFENFET
CSKRLVNKLPIDLFDMFNRLTMDGFVASAFGVYSDTIEQAPHDTRFEAFDGGCDRFIARP
FLETLKHAKRFCSIRERIESGE
>seq0061
ERIESHDLLSLFMFTEEELQDLCLNFIIAGRDTTAENISWLMYELSKNPHVLQLVIDEIN
TLTYDNVELTYLESALLETQRLHPSVPTLNRQAKRDIKLPFTVKKGDIYMVHNYAMGRAP
WIWEDPLRFDPTRFSYEPQVFPQFNIAPRMCLGKHVAMME
>seq0062
YNLLSLFLNYTLDELRDICINFIIAGRDTTAETLTWLCVELSSHPDIVDQIRNEINQVTY
ESLEMKYTESALLETQRLHPSVPSLIRFAFQDIVLPYTIRKGDAVNVFNYAMGRSPWIWE
NPLQFHPPRFQFHPSVYPAFNIGQRLCLGRHVALMHAKVVLYHLFKHFNFKAVPAPLKNG
FQVHLQPLHPTQN
>seq0063
DLLTLYAITRSELQDVCVNFIIAGRDTTALNLCWLFILLAQNPHCLQQLKDEIRSISFKT
LDMTYTESCILEAQRIYPSVPSLTRVAVTDIPLPYVIHKDEIVVISTFAMNRSPKIWENP
LQFDPSRFEHEPHIYPSFNIGQRLCLGRHVALLVAKVVLYHFFQNFDFQIDMAPLTNGLP
MRIIPLSSSV

33
PTL2/Scripts-DEV/Guidance_EXAMPLE/OG5_126554_0_preguidance/log Normal file
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========================================= NEW GUIDANCE RUN STARTED ===========================================
GUIDANCE COMMAND: perl guidance.v2.02/www/Guidance/guidance.pl --bootstraps 10 --seqFile batch2/OG5_126554_0_preguidance.fasta --msaProgram MAFFT --seqType aa --outDir /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance --seqCutoff 0.7 --colCutoff 0.4 --outOrder as_input --MSA_Param \--auto --maxiterate 1000 --thread 6 --bl 62 --anysymbol
Guidance::validate_Seqs(/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/,Seqs.Orig.fas,AminoAcids,No): return: OK Seqs.Orig.fas.FIXED 64
Guidance::name2codeFastaFrom1(/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.Orig.fas.FIXED, /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.Codes, /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.numberd.fas,0,seqNum);
convert_fs_to_upper_case(/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.numberd.fas)
Align: mafft \--auto --maxiterate 1000 --thread 6 --bl 62 --anysymbol --amino --quiet /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.numberd.fas > /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.aln
Bootstrap_Trees: /scratch/katzlab/auden/Guidance/General/Seq0.7/guidance.v2.02/www/Guidance/../../programs/semphy/semphy -a 20 --jtt -H -J -v 8 --BPrepeats=10 -s /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.aln -o /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/MSA.MAFFT.semphy.out -T /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/MSA.MAFFT.semphy.outTree -l /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/MSA.MAFFT.semphy.log > /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/MSA.MAFFT.semphy.std
Guidance::pullOutBPtrees(/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/,MSA,10,MAFFT);
Guidance::root_BP_trees(/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/,MSA, MAFFT, 10,"",BioPerl);
Sample op according to uniform distribution: Guidance::SampleFromUnifomDist(1,3,/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance//SampledOPVals.log,10)
run_HOT_COS_GUIDANCE2: cd /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/; perl /scratch/katzlab/auden/Guidance/General/Seq0.7/guidance.v2.02/www/Guidance/exec/HoT_COS_GUIDANCE2.pl MSA_0 MFT aa Seqs.numberd.fas . "" 0 mafft /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/tree_0/MSA.MAFFT.semphy.tree_0.rooted.GoodBranchLength 19 --- \--auto --maxiterate 1000 --thread 6 --bl 62 --anysymbol --op 2.000817428956 >> COS.std
run_HOT_COS_GUIDANCE2: cd /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/; perl /scratch/katzlab/auden/Guidance/General/Seq0.7/guidance.v2.02/www/Guidance/exec/HoT_COS_GUIDANCE2.pl MSA_1 MFT aa Seqs.numberd.fas . "" 0 mafft /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/tree_1/MSA.MAFFT.semphy.tree_1.rooted.GoodBranchLength 108 --- \--auto --maxiterate 1000 --thread 6 --bl 62 --anysymbol --op 2.58462865668747 >> COS.std
run_HOT_COS_GUIDANCE2: cd /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/; perl /scratch/katzlab/auden/Guidance/General/Seq0.7/guidance.v2.02/www/Guidance/exec/HoT_COS_GUIDANCE2.pl MSA_2 MFT aa Seqs.numberd.fas . "" 0 mafft /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/tree_2/MSA.MAFFT.semphy.tree_2.rooted.GoodBranchLength 82 --- \--auto --maxiterate 1000 --thread 6 --bl 62 --anysymbol --op 1.49936059497511 >> COS.std
run_HOT_COS_GUIDANCE2: cd /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/; perl /scratch/katzlab/auden/Guidance/General/Seq0.7/guidance.v2.02/www/Guidance/exec/HoT_COS_GUIDANCE2.pl MSA_3 MFT aa Seqs.numberd.fas . "" 0 mafft /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/tree_3/MSA.MAFFT.semphy.tree_3.rooted.GoodBranchLength 60 --- \--auto --maxiterate 1000 --thread 6 --bl 62 --anysymbol --op 1.23331485380722 >> COS.std
run_HOT_COS_GUIDANCE2: cd /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/; perl /scratch/katzlab/auden/Guidance/General/Seq0.7/guidance.v2.02/www/Guidance/exec/HoT_COS_GUIDANCE2.pl MSA_4 MFT aa Seqs.numberd.fas . "" 0 mafft /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/tree_4/MSA.MAFFT.semphy.tree_4.rooted.GoodBranchLength 76 --- \--auto --maxiterate 1000 --thread 6 --bl 62 --anysymbol --op 2.15783221114012 >> COS.std
run_HOT_COS_GUIDANCE2: cd /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/; perl /scratch/katzlab/auden/Guidance/General/Seq0.7/guidance.v2.02/www/Guidance/exec/HoT_COS_GUIDANCE2.pl MSA_5 MFT aa Seqs.numberd.fas . "" 0 mafft /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/tree_5/MSA.MAFFT.semphy.tree_5.rooted.GoodBranchLength 53 --- \--auto --maxiterate 1000 --thread 6 --bl 62 --anysymbol --op 2.90590667209469 >> COS.std
run_HOT_COS_GUIDANCE2: cd /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/; perl /scratch/katzlab/auden/Guidance/General/Seq0.7/guidance.v2.02/www/Guidance/exec/HoT_COS_GUIDANCE2.pl MSA_6 MFT aa Seqs.numberd.fas . "" 0 mafft /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/tree_6/MSA.MAFFT.semphy.tree_6.rooted.GoodBranchLength 57 --- \--auto --maxiterate 1000 --thread 6 --bl 62 --anysymbol --op 2.63676633992571 >> COS.std
run_HOT_COS_GUIDANCE2: cd /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/; perl /scratch/katzlab/auden/Guidance/General/Seq0.7/guidance.v2.02/www/Guidance/exec/HoT_COS_GUIDANCE2.pl MSA_7 MFT aa Seqs.numberd.fas . "" 0 mafft /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/tree_7/MSA.MAFFT.semphy.tree_7.rooted.GoodBranchLength 100 --- \--auto --maxiterate 1000 --thread 6 --bl 62 --anysymbol --op 2.80645936921989 >> COS.std
run_HOT_COS_GUIDANCE2: cd /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/; perl /scratch/katzlab/auden/Guidance/General/Seq0.7/guidance.v2.02/www/Guidance/exec/HoT_COS_GUIDANCE2.pl MSA_8 MFT aa Seqs.numberd.fas . "" 0 mafft /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/tree_8/MSA.MAFFT.semphy.tree_8.rooted.GoodBranchLength 72 --- \--auto --maxiterate 1000 --thread 6 --bl 62 --anysymbol --op 1.84405518368005 >> COS.std
run_HOT_COS_GUIDANCE2: cd /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/; perl /scratch/katzlab/auden/Guidance/General/Seq0.7/guidance.v2.02/www/Guidance/exec/HoT_COS_GUIDANCE2.pl MSA_9 MFT aa Seqs.numberd.fas . "" 0 mafft /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/tree_9/MSA.MAFFT.semphy.tree_9.rooted.GoodBranchLength 24 --- \--auto --maxiterate 1000 --thread 6 --bl 62 --anysymbol --op 2.13819830457351 >> COS.std
calculating SP scores: /scratch/katzlab/auden/Guidance/General/Seq0.7/guidance.v2.02/www/Guidance/../../programs/msa_set_score/msa_set_score /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance//MSA.MAFFT.aln /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance//MSA.MAFFT.Guidance2 -d /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/BP/GUIDANCE2_MSA/ > /Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance//MSA.MAFFT.msa_set_score.std
Guidance::codes2name_scoresFile_NEW("/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_seq.scr","/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.Codes","/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.aln","/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_seq.scr_with_Names");
Guidance::removeLowSPsites_NoBioPerl ("/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.aln","/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_col.scr","/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.Without_low_SP_Col",0.4,"/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.Orig.fas.FIXED.MSA.MAFFT.Removed_Col");
REMOVED_SITES:0
MSA_LENGTH:351
ans=Convert_to_CSV("/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_col.scr","/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_col.scr.csv");
ANS:OK
Guidance::printColoredAlignment_With_CSS("/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.aln","/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.Guidance_res_pair_res.html","/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_res.scr","/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.Codes","/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_col.scr.csv",GUIDANCE2,"/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_seq.scr");
1Guidance::removeLowSPseq ("/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.aln","/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_seq.scr","/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.Orig.fas.FIXED.Without_low_SP_Seq",0.7,"/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.Orig.fas.FIXED.Removed_Seq");
Guidance::make_Jalview_Color_MSA("/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.aln","/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_res.scr","/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_JalView_Features","/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/Seqs.Codes");
Guidance::make_Jalview_AnnotationGraph("/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_JalView_Annot","/Users/katzlab/scratch/katzlab/auden/Guidance/General/Seq0.7/GuidanceOutput/OG5_126554_0_preguidance/MSA.MAFFT.Guidance2_res_pair_col.scr.csv",GUIDANCE2." scores");

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PTL2/Scripts-DEV/Guidance_EXAMPLE/SummarizeRemovedSeqs.py Normal file
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import os, sys
from Bio import SeqIO
from tqdm import tqdm
prev_recs = [rec.id for rec in SeqIO.parse('AllCuratedNTDSeqs_020722_previous.fasta', 'fasta')]
recs5 = { rec.id : file[:12] for file in os.listdir('Seq0.5') for rec in SeqIO.parse('Seq0.5/' + file, 'fasta') }
recs7 = { rec.id : file[:12] for file in os.listdir('Seq0.5') for rec in SeqIO.parse('Seq0.7/' + file, 'fasta') }
#print(len(prev_recs))
print(recs5)
#print(len(recs7))
n_file = open('NumRemovedSeqs.csv', 'w')
seqs5_file = open('AllRemovedSeqs_0.5.csv', 'w')
seqs7_file = open('AllRemovedSeqs_0.7.csv', 'w')
n_by_clade_5 = { }; n_by_clade_7 = { }
for rec in prev_recs:
if(recs5[rec] not in n_by_clade_5):
n_by_clade_5.update({ recs5[rec] : 0 })
n_by_clade_7.update({ recs5[rec] : 0 })
if(rec not in recs5):
seqs5_file.write(rec + '\n')
n_by_clade_5[recs5[rec]] += 1
if(rec not in recs7):
seqs7_file.write(rec + '\n')
n_by_clade_7[recs5[rec]] += 1
seqs5_file.close()

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import os, sys
from Bio import SeqIO
nucls = { rec.id : str(rec.seq) for rec in SeqIO.parse('AllCuratedNTDSeqs_020722_previous.fasta', 'fasta') }
with open('AllCuratedNTDSeqs_022222_Seq0.7.fasta', 'w') as o:
for file in os.listdir('SeqFiltered_ToAlign/Preguidance_0.7_Aligned'):
if('.fas' in file):
for rec in SeqIO.parse('SeqFiltered_ToAlign/Preguidance_0.7_Aligned/' + file, 'fasta'):
o.write('>' + rec.id + '\n' + nucls[rec.id] + '\n\n')

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import os, sys, re
import ete3
from logger import Logger
def get_best_clade(params, tree):
if params.target_taxa_file != None:
try:
target_taxa_list = [line.strip() for line in open(PathtoFiles + '/' + target_taxa_list)]
except (FileNotFoundError, TypeError):
Logger.Error('The --target_taxa_file could not be found or was incorrectly formatted.')
if params.at_least_file != None:
try:
at_least_list = [line.strip() for line in open(PathtoFiles + '/' + at_least_file)]
except (FileNotFoundError, TypeError):
Logger.Error('The --at_least_file could not be found or was incorrectly formatted.')
else:
at_least_list = []
### FROM HERE BELOW IN THIS FUNCTION NEEDS REPLACING WITH ETE3
forbidden_nodes = [node for node in nodes_to_exclude]
for node in nodes_to_exclude:
for num in tree.getNodeNumsAbove(node):
forbidden_nodes.append(tree.node(num))
best_node = None
best_size = 0
for node in tree.iterNodesNoRoot():
if(node not in forbidden_nodes):
leaves = tree.getAllLeafNames(node)
num = 0.0; dem = 0.0;
non_minor = []
for leaf in leaves:
if(leaf[:2] != target_minor and leaf[:4] != target_minor):
num += 1.0;
non_minor.append(leaf[:10])
if(target_taxa_list == 'na' or target_taxa_list == '' or target_taxa_list == 'NA'):
n_targets = len(list(dict.fromkeys([tip[:10] for tip in leaves if(tip[:2] == target_clade or tip[:3] == target_clade or tip[:4] == target_clade or tip[:5] == target_clade or tip[:7] == target_clade or tip[:8] == target_clade)])))
else:
n_targets = len(list(dict.fromkeys([tip[:10] for tip in leaves if((tip[:2] == target_clade or tip[:3] == target_clade or tip[:4] == target_clade or tip[:5] == target_clade or tip[:7] == target_clade or tip[:8] == target_clade) and (tip[:10] in target_taxa_list or tip[:8] in target_taxa_list))])))
at_least_taxa = len(list(dict.fromkeys([leaf[:10] for leaf in tree.getAllLeafNames(node) if leaf[:10] in at_least_list])))
if(num <= cont_num_contams and n_targets > best_size and n_targets >= min_presence and at_least_taxa >= num_at_least):
best_node = node
best_size = n_targets
return best_node

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PTL2/Scripts-DEV/guidance.v2.02/Makefile Normal file
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.PHONY: all libs semphy programs clean install
all: libs programs
debug: libs.debug
%: libs.% programs.%
echo $@
libs: libs.all
programs: programs.all
programs.all: libs
programs.debug: libs.debug
semphy: programs.semphy
install: programs.install
programs.install programs.all semphy: libs
clean: libs.clean programs.clean
libs.%:
+cd libs;make $(*)
programs.%:
+cd programs;make $(*)
tags: libs/*/*.cpp libs/*/*.h programs/*/*.h programs/*/*.cpp
etags --members --language=c++ $^

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GUIDANCE: GUIDe tree based AligNment ConfidencE
GUIDANCE is a software package for aligning biological sequences (DNA or
amino acids) using either MAFFT, PRANK, or CLUSTALW, and calculating
confidence scores for each column, sequence and residue in the alignment.
URL: http://guidance.tau.ac.il/
Authors: Osnat Penn, Eyal Privman, Haim Ashkenazy, Itamar Sela, Giddy Landan, Dan Graur, and Tal Pupko.
When using the GUIDANCE2 algorithm please cite:
-----------------------------------------------------------
Sela, I., Ashkenazy, H., Katoh, K. and Pupko, T. (2015)
GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters.
Nucleic Acids Research, 2015 Jul 1; 43: W7-W14.; doi: 10.1093/nar/gkq443
Landan, G., and D. Graur. (2008).
Local reliability measures from sets of co-optimal multiple sequence alignments.
Pac Symp Biocomput 13:15-24
When using the GUIDANCE algorithm please cite:
-----------------------------------------------------------
Penn, O., Privman, E., Landan, G., Graur, D. and Pupko, T. (2010).
An alignment confidence score capturing robustness to guide-tree uncertainty.
Molecular Biology and Evolution, 2010 Aug;27(8):1759-67; doi:10.1093/molbev/msq066
When using the HoT algorithm please cite:
-----------------------------------------------------------
Landan, G., and D. Graur. (2008).
Local reliability measures from sets of co-optimal multiple sequence alignments.
Pac Symp Biocomput 13:15-24
Installation
============
1. Unpack the archive by typing:
% tar -xzf guidance.v2.01.tgz
2. Compile the package by typing:
% cd guidance.v2.01
% make
(Running `make' takes a while)
3. Check if you have the desired alignment program installed:
MAFFT: Type "mafft" and check that you have version 6.712 or newer.
* Else download and install MAFFT from: http://mafft.cbrc.jp/alignment/software/
PRANK: Type "prank" and check that you have it insalled
* Else download and install PRANK from: http://www.ebi.ac.uk/goldman-srv/prank/prank/
CLUSTALW: Type "clustalw" and check that you have it insalled
* Else download and install CLUSTALW from: http://www.ebi.ac.uk/Tools/clustalw2/index.html
MUSCLE: Type "muscle" and check that you have it insalled
* Else download and install MUSCLE from: http://www.drive5.com/muscle/index.htm
PAGAN: Type "pagan" and check that you have it installed
* Else download and install PAGAN from: http://code.google.com/p/pagan-msa/
* In case PAGAN is used not for user provided alignment (using --msaFile), mafft is also required to be installed.
4. GUIDANCE also uses Perl, BioPerl and Ruby:
* Type "perl -v" and check that you Perl installed.
Else download and install it from: http://www.perl.org/
* Type "perl -e 'use Bio::SeqIO'" to check that you have BioPerl.
Else download and install it from: http://www.bioperl.org/
* Type "ruby -version" to check that you have ruby.
Else download and install it from: http://www.ruby-lang.org/en/
Usage
=====
Run the Perl script: guidance.v2.01/www/Guidance/guidance.pl
(Note that you cannot move this script out of its directory, because it uses relative paths to other files in other directories. Sorry)
GUIDANCE uses flags in the command line arguments: (for help, type: "perl guidance")
USAGE:perl guidance.pl --seqFile SEQFILE --msaProgram [MAFFT|PRANK|CLUSTALW|MUSCLE] --seqType [aa|nuc|codon] --outDir FULL_PATH_OUTDIR
Required parameters:
--seqFile Input sequence file in FASTA format
--seqType Sequence type may be either of: nuc (nucleotides), aa (amino acids),
or codon (nucleotides that will be treated as whole codons)
--msaProgram The alignment program - may be either MAFFT, PRANK, CLUSTALW or MUSCLE
--outDir The output directory were all output files will be created [please provide full and not relative path]
(will be created automatically)
Optional parameters:
--program The confidence measure may be GUIDANCE2, GUIDANCE or HoT. default=GUIDANCE2
--bootstraps Number of bootstrap iterations. default=100
--genCode Genetic code for use in codon sequence. default=1
1> Nuclear Standard
15> Nuclear Blepharisma
6> Nuclear Ciliate
10> Nuclear Euplotid
2> Mitochondria Vertebrate
5> Mitochondria Invertebrate
3> Mitochondria Yeast
13> Mitochondria Ascidian
9> Mitochondria Echinoderm
14> Mitochondria Flatworm
4> Mitochondria Protozoan
--outOrder May be either aligned or as_input. default=aligned
--msaFile Input alignment file - not recommended, see documentation online at: guidance.tau.ac.il
--seqCutoff Sequence confidence cutoff between 0 to 1. default=0.6
--colCutoff Columnd confidence cutoff between 0 to 1. default=0.93
--mafft Path to mafft executable. default=mafft
--prank Path to prank executable. default=prank
--clustalw path to clustalw executable. default=clustalw
--muscle path to muscle executable. default=muscle
--pagan path to pagan executable. default=pagan
--ruby path to ruby executable. default=ruby
--dataset Unique name for the Dataset - will be used as prefix to outputs (default=MSA)
--MSA_Param: Passing parameters for the alignment program e.g -F to prank. To pass parameter containning '-' in it, add \ before each '-' e.g. \-F for PRANK
--proc_num: Number of processors to use (default=1)
EXAMPLES:
>perl guidance.pl --seqFile protein.fas --msaProgram MAFFT --seqType aa --outDir /somedir/protein.guidance
Will align the amino acid sequences in the fasta file "protein.fas" using MAFFT and output all results to the diretory "/somedir/protein.guidance"
>perl guidance.pl --seqFile codingSeq.fas --msaProgram PRANK --seqType codon --outDir /somedir/codingSeq.guidance --genCode 2 --bootstraps 30
Will align the codon sequences in the fasta file "codingSeq.fas" using PRANK after translation using the vertebrate mitochondrial genetic code and output all results to the diretory "/somedir/codingSeq.guidance". Only 30 bootstrap iterations will be done instead of the default 100 (cut run-time by a factor of 3)
Copyrights
==========
* To modify the code, or use parts of it for other purposes, permission should be requested. Please contact Tal Pupko: talp@post.tau.ac.il
* Please note that the use of the GUIDANCE program is for academic use only

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# $Id: Makefile 942 2006-10-18 12:28:12Z ninio $
# There might be need for a split (as done in programs/Makefile) becouse of a bug in make 3.80.1 - see
# http://www.cygwin.com/ml/cygwin/2004-09/msg01659.html
LIBS= phylogeny
# all has to be the FIRST task!
TASKS= all clean test depend debug All install doubleRep
.PHONY: $(TASKS) $(LIBS)
define TASKS_template
$(1): $$(addsuffix .$(1),$(LIBS))
endef
$(foreach task,$(TASKS),$(eval $(call TASKS_template,$(task))))
define LIB_template
$(1).%:
+cd $(1) && make $$(*)
endef
$(foreach lib,$(LIBS),$(eval $(call LIB_template,$(lib))))
$(LIBS):
+cd $@ && make

82
PTL2/Scripts-DEV/guidance.v2.02/libs/phylogeny/.project Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<projectDescription>
<name>phylogeny</name>
<comment></comment>
<projects>
</projects>
<buildSpec>
<buildCommand>
<name>org.eclipse.cdt.managedbuilder.core.genmakebuilder</name>
<triggers>clean,full,incremental,</triggers>
<arguments>
<dictionary>
<key>?name?</key>
<value></value>
</dictionary>
<dictionary>
<key>org.eclipse.cdt.make.core.append_environment</key>
<value>true</value>
</dictionary>
<dictionary>
<key>org.eclipse.cdt.make.core.autoBuildTarget</key>
<value>all</value>
</dictionary>
<dictionary>
<key>org.eclipse.cdt.make.core.buildArguments</key>
<value></value>
</dictionary>
<dictionary>
<key>org.eclipse.cdt.make.core.buildCommand</key>
<value>make</value>
</dictionary>
<dictionary>
<key>org.eclipse.cdt.make.core.buildLocation</key>
<value>${workspace_loc:/phylogeny/Debug}</value>
</dictionary>
<dictionary>
<key>org.eclipse.cdt.make.core.cleanBuildTarget</key>
<value>clean</value>
</dictionary>
<dictionary>
<key>org.eclipse.cdt.make.core.contents</key>
<value>org.eclipse.cdt.make.core.activeConfigSettings</value>
</dictionary>
<dictionary>
<key>org.eclipse.cdt.make.core.enableAutoBuild</key>
<value>false</value>
</dictionary>
<dictionary>
<key>org.eclipse.cdt.make.core.enableCleanBuild</key>
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<value>all</value>
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<key>org.eclipse.cdt.make.core.stopOnError</key>
<value>true</value>
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<key>org.eclipse.cdt.make.core.useDefaultBuildCmd</key>
<value>true</value>
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</arguments>
</buildCommand>
<buildCommand>
<name>org.eclipse.cdt.managedbuilder.core.ScannerConfigBuilder</name>
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</arguments>
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// $Id: AddLog.cpp 962 2006-11-07 15:13:34Z privmane $
// version 1.00
// last modified 3 Nov 2002
#include "AddLog.h"
#include <cmath>
const int tAddLog_Precompute::G_LOGADD = 500;
const int tAddLog_Precompute::D_LOGADD = 50;
tAddLog_Precompute AddLogData;
int tAddLog_Precompute::d_logadd;
tAddLog_Precompute::tAddLog_Precompute(){
d_logadd = int(D_LOGADD*log(10.0)*G_LOGADD);
logaddf = new double [d_logadd+1];
for (int i=0; i<= d_logadd; i++)
logaddf[i] = log(1.0+exp(-static_cast<double>(i)/G_LOGADD));
}
tAddLog_Precompute::~tAddLog_Precompute(){
delete [] logaddf;
}

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// $Id: AddLog.h 962 2006-11-07 15:13:34Z privmane $
// version 1.00
// last modified 2 Nov 2002
#ifndef __AddLog_h
#define __AddLog_h
#include <iostream>
using namespace std;
class tAddLog_Precompute {
public:
tAddLog_Precompute();
~tAddLog_Precompute();
double AddLog( double x, double y );
private:
static const int D_LOGADD; // = 50; // y/x < 1e-D discard
static const int G_LOGADD;// = 500; // step function look-up every 1/G
static int d_logadd;
double *logaddf;
};
extern tAddLog_Precompute AddLogData;
inline
double
AddLog(double x, double y ){
return AddLogData.AddLog(x, y);
}
inline double
tAddLog_Precompute::AddLog(double x, double y ){
if (x < y) {
double dummy = x;
x = y;
y = dummy;
}
#ifdef notdef
return x + log(1 + exp(y-x));
#endif
double z = (x-y)*G_LOGADD;
int i = int(z);
if( i < d_logadd ) x += ((i+1-z)*logaddf[i] + (z-i)*logaddf[i+1]);
return x;
}
#endif
/*
Folks,
In many of our program we use the AddLog procedure that compute the sum of
two numbers in log form. Gill spent some time investigating faster versions
of this procedure, which gave him 3-4 fold speedup on his program. Attached
is my re-packaging of his solution. I think it will be useful in some of the
code we use.
-Nir
*/

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// $Id: C_evalParamUSSRV.cpp 1915 2007-04-04 15:56:24Z privmane $
#include "C_evalParamUSSRV.h"
// *********************
// * USSRV *
// *********************
MDOUBLE C_evalParamUSSRV::operator() (MDOUBLE param) {
setParam(param);
MDOUBLE res = likelihoodComputation2USSRV::getTreeLikelihoodAllPosAlphTheSame(_et,_sc,_baseSc,*_pModel,_weights);
print(param,res);
return -res;
}
void C_evalAlphaUSSRV::setParam(MDOUBLE alpha)
{
if (_pModel->noOfCategor() == 1)
errorMsg::reportError(" one category when trying to optimize alpha");
_pModel->updateAlpha(alpha);
}
void C_evalAlphaUSSRV::print(MDOUBLE alpha,MDOUBLE res) {
LOG(5,<<" with Alpha = "<<alpha<<" logL = " <<res<<endl);
}
void C_evalNuUSSRV::setParam(MDOUBLE Nu)
{
_pModel->updateNu(Nu);
}
void C_evalNuUSSRV::print(MDOUBLE nu,MDOUBLE res) {
LOG(5,<<" with Nu = "<<nu<<" logL = " <<res<<endl);
}
void C_evalFUSSRV::setParam(MDOUBLE f)
{
_pModel->updateF(f);
}
void C_evalFUSSRV::print(MDOUBLE f,MDOUBLE res) {
LOG(5,<<" with F = "<<f<<" logL = " <<res<<endl);
}
// *********************
// * SSRV *
// *********************
MDOUBLE C_evalParamSSRV::operator() (MDOUBLE param) {
setParam(param);
MDOUBLE res = likelihoodComputation::getTreeLikelihoodAllPosAlphTheSame(_et,_sc,_ssrvSp,_weights);
print(param,res);
return -res;
}
void C_evalAlphaSSRV::setParam(MDOUBLE alpha)
{
if (alpha<0)
errorMsg::reportError("ERROR in C_evalAlphaSSRV::setParam, alpha is < 0 ");
replacementModelSSRV* pMulRM = static_cast<replacementModelSSRV*>(_ssrvSp.getPijAccelerator()->getReplacementModel());
gammaDistribution* gammaDist = static_cast<gammaDistribution*>(pMulRM->getDistribution());
gammaDist->setAlpha(alpha);
pMulRM->updateQ();
}
void C_evalAlphaSSRV::print(MDOUBLE alpha,MDOUBLE res) {
LOG(5,<<" with Alpha = "<<alpha<<" logL = " <<res<<endl);
}
void C_evalNuSSRV::setParam(MDOUBLE Nu)
{
if (Nu<0)
errorMsg::reportError("C_evalNuSSRV::setParam, nu is < 0 ");
static_cast<replacementModelSSRV*>(_ssrvSp.getPijAccelerator()->getReplacementModel())->setRateOfRate(Nu);
}
void C_evalNuSSRV::print(MDOUBLE nu,MDOUBLE res) {
LOG(5,<<" with Nu = "<<nu<<" logL = " <<res<<endl);
}
void C_evalTrTvSSRV::setParam(MDOUBLE TrTv)
{
replacementModelSSRV* pMulRM = static_cast<replacementModelSSRV*>(_ssrvSp.getPijAccelerator()->getReplacementModel());
static_cast<tamura92*>(pMulRM->getBaseRM())->changeTrTv(TrTv);
pMulRM->updateQ();
}
void C_evalTrTvSSRV::print(MDOUBLE TrTv,MDOUBLE res) {
LOG(5,<<" with TrTv = "<<TrTv<<" logL = " <<res<<endl);
}
void C_evalThetaSSRV::setParam(MDOUBLE Theta)
{
replacementModelSSRV* pMulRM = static_cast<replacementModelSSRV*>(_ssrvSp.getPijAccelerator()->getReplacementModel());
static_cast<tamura92*>(pMulRM->getBaseRM())->changeTheta(Theta);
pMulRM->updateFreq();
pMulRM->updateQ();
}
void C_evalThetaSSRV::print(MDOUBLE Theta,MDOUBLE res) {
LOG(5,<<" with Theta = "<<Theta<<" logL = " <<res<<endl);
}

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// $Id: C_evalParamUSSRV.h 1915 2007-04-04 15:56:24Z privmane $
#ifndef ___C_EVAL_PARAM_USSRV
#define ___C_EVAL_PARAM_USSRV
#include "definitions.h"
#include "likelihoodComputation.h"
#include "likelihoodComputation2USSRV.h"
#include "sequenceContainer.h"
#include "stochasticProcess.h"
#include "gammaDistribution.h"
#include "tree.h"
#include "replacementModelSSRV.h"
#include "tamura92.h"
#include "stochasticProcessSSRV.h"
#include "ussrvModel.h"
#include "logFile.h"
// *********************
// * USSRV *
// *********************
class C_evalParamUSSRV {
public:
C_evalParamUSSRV(const tree& et,
const sequenceContainer& sc,
const sequenceContainer& baseSc,
ussrvModel* pModel,
const Vdouble* weights = NULL)
: _et(et),_sc(sc),_baseSc(baseSc),_pModel(pModel),_weights(weights){}
MDOUBLE operator() (MDOUBLE param) ;
virtual ~C_evalParamUSSRV(){}
protected:
const tree& _et;
const sequenceContainer& _sc;
const sequenceContainer& _baseSc;
ussrvModel* _pModel;
const Vdouble * _weights;
protected:
virtual void setParam(MDOUBLE param) = 0;
virtual void print(MDOUBLE param,MDOUBLE res) =0;
};
class C_evalAlphaUSSRV : public C_evalParamUSSRV {
public:
C_evalAlphaUSSRV(const tree& et,
const sequenceContainer& sc,
const sequenceContainer& baseSc,
ussrvModel* pModel,
const Vdouble *weights = NULL)
: C_evalParamUSSRV(et,sc,baseSc,pModel,weights)
{}
protected:
virtual void setParam(MDOUBLE alpha);
virtual void print(MDOUBLE alpha,MDOUBLE res);
};
class C_evalNuUSSRV : public C_evalParamUSSRV{
public:
C_evalNuUSSRV( const tree& et,
const sequenceContainer& sc,
const sequenceContainer& baseSc,
ussrvModel* pModel,
const Vdouble * weights = NULL)
: C_evalParamUSSRV(et,sc,baseSc,pModel,weights){}
protected:
virtual void setParam(MDOUBLE Nu);
virtual void print(MDOUBLE nu,MDOUBLE res);
};
class C_evalFUSSRV : public C_evalParamUSSRV{
public:
C_evalFUSSRV( const tree& et,
const sequenceContainer& sc,
const sequenceContainer& baseSc,
ussrvModel* pModel,
const Vdouble * weights = NULL)
: C_evalParamUSSRV(et,sc,baseSc,pModel,weights){}
protected:
virtual void setParam(MDOUBLE F);
virtual void print(MDOUBLE f,MDOUBLE res);
};
// *********************
// * SSRV *
// *********************
class C_evalParamSSRV {
public:
C_evalParamSSRV(const tree& et,
const sequenceContainer& sc,
stochasticProcessSSRV& ssrvSp,
const Vdouble* weights = NULL)
: _et(et),_sc(sc),_ssrvSp(ssrvSp),_weights(weights){}
MDOUBLE operator() (MDOUBLE param) ;
virtual ~C_evalParamSSRV(){}
protected:
const tree& _et;
const sequenceContainer& _sc;
stochasticProcessSSRV& _ssrvSp;
const Vdouble * _weights;
protected:
virtual void setParam(MDOUBLE param) = 0;
virtual void print(MDOUBLE param,MDOUBLE res) =0;
};
class C_evalAlphaSSRV : public C_evalParamSSRV {
public:
C_evalAlphaSSRV(const tree& et,
const sequenceContainer& sc,
stochasticProcessSSRV& ssrvSp,
const Vdouble *weights = NULL)
: C_evalParamSSRV(et,sc,ssrvSp,weights)
{}
protected:
virtual void setParam(MDOUBLE alpha);
virtual void print(MDOUBLE alpha,MDOUBLE res);
};
class C_evalNuSSRV : public C_evalParamSSRV{
public:
C_evalNuSSRV( const tree& et,
const sequenceContainer& sc,
stochasticProcessSSRV& ssrvSp,
const Vdouble * weights = NULL)
: C_evalParamSSRV(et,sc,ssrvSp,weights){}
protected:
virtual void setParam(MDOUBLE Nu);
virtual void print(MDOUBLE nu,MDOUBLE res);
};
class C_evalTrTvSSRV : public C_evalParamSSRV{
public:
C_evalTrTvSSRV(const tree& et,
const sequenceContainer& sc,
stochasticProcessSSRV& ssrvSp,
const Vdouble * weights = NULL)
: C_evalParamSSRV(et,sc,ssrvSp,weights){}
protected:
virtual void setParam(MDOUBLE TrTv);
virtual void print(MDOUBLE TrTv,MDOUBLE res);
};
class C_evalThetaSSRV : public C_evalParamSSRV{
public:
C_evalThetaSSRV(const tree& et,
const sequenceContainer& sc,
stochasticProcessSSRV& ssrvSp,
const Vdouble * weights = NULL)
: C_evalParamSSRV(et,sc,ssrvSp,weights){}
protected:
virtual void setParam(MDOUBLE Theta);
virtual void print(MDOUBLE Theta,MDOUBLE res);
};
#endif

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#include "ConversionUtils.h"
#include "someUtil.h"
#include "errorMsg.h"
#include <cmath>
using namespace std;
void appendIntToString (string& ioString, const int inValue) {
std::ostringstream o;
o << ioString<< inValue;
ioString = o.str();
}
string appendInt2string(const int x)
{
string res;
appendIntToString(res, x);
return res;
}
string appendDouble2string(const double x, const int lenght){
// first getting the integer part:
int theIntegerPart = static_cast<int>(x);
double theRemainingPart = fabs(x-theIntegerPart);
int integerRepresentingTheRemainingPart = static_cast<int>(theRemainingPart*pow(10.0,lenght));
string part1, part2;
appendIntToString(part1, theIntegerPart);
appendIntToString(part2, integerRepresentingTheRemainingPart);
while (part2.length()<lenght){
part2.insert(0, "0");
}
string result = part1;
result += ".";
result += part2;
// removing 0 from the end
int i = result.length()-1;
while (result[i]!='.' && i>0 && result[i]=='0'){
result.erase(i);
i--;
}
// removing "." if this is the last character in the string.
if (result[result.length()-1]=='.')
result.erase(result.length()-1);
return result;
}

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//utility class that converts between data types
#ifndef ___ConversionUtils_h
#define ___ConversionUtils_h
#include <sstream>
#include <string>
#include "definitions.h"
using namespace std;
//a function that turns an integer to string
void appendIntToString (string& ioString, const int inValue);
string appendDouble2string(const double x, int const howManyDigitsAfterTheDot=5);
string appendInt2string(const int x);
// Trims spaces at the left side of a string
static inline string trim_left(const string& str )
{
int i=str.find_first_not_of(" \t");
if(str.size()==0 || i >= str.size())
return str;
return str.substr( i ) ;
}
////
// Trims spaces at the right side of a string
static inline string trim_right(const string& str )
{
int i=str.find_last_not_of(" \t");
if(str.size()==0 || i >= str.size())
return str;
return str.substr(0, i + 1);
}
////
// Trims spaces at both sides of a string
static inline string trim(const string& str )
{
return trim_left(trim_right(str));
}
#endif

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// $Id: GLaguer.cpp 962 2006-11-07 15:13:34Z privmane $
#include "definitions.h"
#include "GLaguer.h"
#include "errorMsg.h"
#include "gammaUtilities.h"
GLaguer::GLaguer(const int pointsNum, const MDOUBLE alf, Vdouble & points, Vdouble & weights)
{
gaulag(_points, _weights, alf, pointsNum);
weights = _weights;
points = _points;
}
//Input: alf = the alpha parameter of the Laguerre polynomials
// pointsNum = the polynom order
//Output: the abscissas and weights are stored in the vecotrs x and w, respectively.
//Discreption: given alf, the alpha parameter of the Laguerre polynomials, the function returns the abscissas and weights
// of the n-point Guass-Laguerre quadrature formula.
// The smallest abscissa is stored in x[0], the largest in x[pointsNum - 1].
void GLaguer::gaulag(Vdouble &x, Vdouble &w, const MDOUBLE alf, const int pointsNum)
{
x.resize(pointsNum, 0.0);
w.resize(pointsNum, 0.0);
const int MAXIT=10000;
const MDOUBLE EPS=1.0e-6;
int i,its,j;
MDOUBLE ai,p1,p2,p3,pp,z=0.0,z1;
int n= x.size();
for (i=0;i<n;i++) {
//loops over the desired roots
if (i == 0) { //initial guess for the smallest root
z=(1.0+alf)*(3.0+0.92*alf)/(1.0+2.4*n+1.8*alf);
} else if (i == 1) {//initial guess for the second smallest root
z += (15.0+6.25*alf)/(1.0+0.9*alf+2.5*n);
} else { //initial guess for the other roots
ai=i-1;
z += ((1.0+2.55*ai)/(1.9*ai)+1.26*ai*alf/
(1.0+3.5*ai))*(z-x[i-2])/(1.0+0.3*alf);
}
for (its=0;its<MAXIT;its++) { //refinement by Newton's method
p1=1.0;
p2=0.0;
for (j=0;j<n;j++) { //Loop up the recurrence relation to get the Laguerre polynomial evaluated at z.
p3=p2;
p2=p1;
p1=((2*j+1+alf-z)*p2-(j+alf)*p3)/(j+1);
}
//p1 is now the desired Laguerre polynomial. We next compute pp, its derivative,
//by a standard relation involving also p2, the polynomial of one lower order.
pp=(n*p1-(n+alf)*p2)/z;
z1=z;
z=z1-p1/pp; //Newton's formula
if (fabs(z-z1) <= EPS)
break;
}
if (its >= MAXIT)
errorMsg::reportError("too many iterations in gaulag");
x[i]=z;
w[i] = -exp(gammln(alf+n)-gammln(MDOUBLE(n)))/(pp*n*p2);
}
}
void GLaguer::GetPhylipLaguer(const int categs, MDOUBLE alpha, Vdouble & points, Vdouble & weights)
{
/* calculate rates and probabilities to approximate Gamma distribution
of rates with "categs" categories and shape parameter "alpha" using
rates and weights from Generalized Laguerre quadrature */
points.resize(categs, 0.0);
weights.resize(categs, 0.0);
long i;
raterootarray lgroot; /* roots of GLaguerre polynomials */
double f, x, xi, y;
alpha = alpha - 1.0;
lgroot[1][1] = 1.0+alpha;
for (i = 2; i <= categs; i++)
{
cerr<<lgroot[i][1]<<"\t";
lgr(i, alpha, lgroot); /* get roots for L^(a)_n */
cerr<<lgroot[i][1]<<endl;
}
/* here get weights */
/* Gamma weights are (1+a)(1+a/2) ... (1+a/n)*x_i/((n+1)^2 [L_{n+1}^a(x_i)]^2) */
f = 1;
for (i = 1; i <= categs; i++)
f *= (1.0+alpha/i);
for (i = 1; i <= categs; i++) {
xi = lgroot[categs][i];
y = glaguerre(categs+1, alpha, xi);
x = f*xi/((categs+1)*(categs+1)*y*y);
points[i-1] = xi/(1.0+alpha);
weights[i-1] = x;
}
}
void GLaguer::lgr(long m, double alpha, raterootarray lgroot)
{ /* For use by initgammacat. Get roots of m-th Generalized Laguerre
polynomial, given roots of (m-1)-th, these are to be
stored in lgroot[m][] */
long i;
double upper, lower, x, y;
bool dwn; /* is function declining in this interval? */
if (m == 1) {
lgroot[1][1] = 1.0+alpha;
} else {
dwn = true;
for (i=1; i<=m; i++) {
if (i < m) {
if (i == 1)
lower = 0.0;
else
lower = lgroot[m-1][i-1];
upper = lgroot[m-1][i];
}
else { /* i == m, must search above */
lower = lgroot[m-1][i-1];
x = lgroot[m-1][m-1];
do {
x = 2.0*x;
y = glaguerre(m, alpha,x);
} while ((dwn && (y > 0.0)) || ((!dwn) && (y < 0.0)));
upper = x;
}
while (upper-lower > 0.000000001) {
x = (upper+lower)/2.0;
if (glaguerre(m, alpha, x) > 0.0) {
if (dwn)
lower = x;
else
upper = x;
}
else {
if (dwn)
upper = x;
else
lower = x;
}
}
lgroot[m][i] = (lower+upper)/2.0;
dwn = !dwn; // switch for next one
}
}
} /* lgr */
double GLaguer::glaguerre(long m, double b, double x)
{ /* Generalized Laguerre polynomial computed recursively.
For use by initgammacat */
long i;
double gln, glnm1, glnp1; /* L_n, L_(n-1), L_(n+1) */
if (m == 0)
return 1.0;
else {
if (m == 1)
return 1.0 + b - x;
else {
gln = 1.0+b-x;
glnm1 = 1.0;
for (i=2; i <= m; i++) {
glnp1 = ((2*(i-1)+b+1.0-x)*gln - (i-1+b)*glnm1)/i;
glnm1 = gln;
gln = glnp1;
}
return gln;
}
}
} /* glaguerre */

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// $Id: GLaguer.h 962 2006-11-07 15:13:34Z privmane $
#ifndef ___GLAGUER
#define ___GLAGUER
#include "definitions.h"
#include <vector>
using namespace std;
typedef double raterootarray[35][35];
class GLaguer
{
public:
explicit GLaguer(const int pointsNum, const MDOUBLE alpha, Vdouble & points, Vdouble & weights);
void GetPhylipLaguer(const int pointsNum, MDOUBLE alf, Vdouble & points, Vdouble & weights);
private:
void gaulag(Vdouble &x, Vdouble &w, const MDOUBLE alf, const int pointsNum);
void lgr(long m, double alpha, raterootarray lgroot);
double glaguerre(long m, double b, double x);
private:
Vdouble _points;
Vdouble _weights;
};
#endif

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#include "GamMixtureOptimizer.h"
#include "someUtil.h"
#include "optGammaMixtureEM.h"
#include "optGammaMixtureLS.h"
#include <fstream>
#include <algorithm>
#include <ctime>
using namespace std;
GamMixtureOptimizer::GamMixtureOptimizer(stochasticProcess* pSp, const sequenceContainer& sc, const tree& inTree, unObservableData* unObservableData_p)
{
_pSc = &sc;
_pTree = &inTree;
_pSp = pSp;
_unObservableData_p = unObservableData_p;
_tolOptSpecific = 0.001;
}
GamMixtureOptimizer::~GamMixtureOptimizer()
{
}
///////////////////////////////////////////////////////////////////////////////////////////////////////////
//findBestParamManyStarts: Finds the best gammaMixture from many starting points.
//The function starts form few starting points.
//For each point it tries to optimize the likellihood doing only a small number of iterations.
//It then picks the best points (highest likelihood) and continue the maximization for these points only.
//This can be repeated a number of times, each cycle with a different optimization algorithm.
//The best gammaMixture is stored in _sp and the best likelihood is returned.
//input Parameters:
//pointsNum: a vector with the number of points to peformed the current cycle of optimization.
//iterNum: the number of iterations to perform in each cycle.
//OptAlgs: the optimization algorithm to be performed in each cycle.
//tol = for determining convergence in the maximization process.
MDOUBLE GamMixtureOptimizer::findBestParamManyStarts(const Vint pointsNum, const Vint iterNum, const vector<OptimAlg> OptAlgs, const Vdouble tols, const Vdouble * pWeights, ofstream* pOutF/*= NULL*/)
{
//make sure that the number of points in each cycle is not bigger than the previous cycle.
int i;
for (i = 0; i < pointsNum.size()-1; ++i)
{
if (pointsNum[i] < pointsNum[i+1])
errorMsg::reportError("input error in GamMixtureOptimizer::findBestParamManyStarts()");
}
//create starting distributions
vector<mixtureDistribution*> distVec;
const mixtureDistribution * pMixture = getMixtureDist();
for (i = 0; i < pointsNum[0]; ++i)
{
//the first distribution will be the current one
if (i == 0)
distVec.push_back(new mixtureDistribution(*pMixture));
else
distVec.push_back(new mixtureDistribution(pMixture->getComponentsNum(), pMixture->categoriesForOneComponent(), LAGUERRE, 15, 15));
}
//make a small number of iterations for all random starts
int numOfOptCycles = pointsNum.size();
Vdouble likelihoodVec;
for (i = 0; i < numOfOptCycles; ++i)
{
if (i != 0)
{
vector<mixtureDistribution*> tmpDistVec(0);
//sort results and continue optimization only with the best (pointsNum[i]) points
Vdouble sortedL = likelihoodVec;
sort(sortedL.begin(),sortedL.end());
MDOUBLE threshold = sortedL[sortedL.size()- pointsNum[i]];
for (int j = 0; j < likelihoodVec.size(); ++j)
{
if (likelihoodVec[j] >= threshold)
tmpDistVec.push_back(distVec[j]);
else
delete distVec[j];
}
distVec.clear();
distVec = tmpDistVec;
}
likelihoodVec.clear();
likelihoodVec.resize(pointsNum[i]);
int c;
for (c = 0; c < pointsNum[i]; ++c)
{
cerr <<"optimizing point " <<c<<endl;
MDOUBLE ll = optimizeParam(distVec[c], iterNum[i], OptAlgs[i], tols[i], pWeights, pOutF);
cerr<<"pointi: "<<c<<" likelihood = "<<ll<<endl;
likelihoodVec[c] = ll;
}
}
Vdouble sortedL = likelihoodVec;
sort(sortedL.begin(),sortedL.end());
MDOUBLE bestL = sortedL[likelihoodVec.size() - 1];
for (i = 0; i < likelihoodVec.size(); ++i)
{
if (bestL == likelihoodVec[i])
{
_pSp->setDistribution(distVec[i]);
}
delete distVec[i];
}
distVec.clear();
return bestL;
}
MDOUBLE GamMixtureOptimizer::findBestParam(const OptimAlg alg, const int maxIterations, const MDOUBLE tol, const Vdouble * pWeights, ofstream* pOutF)
{
mixtureDistribution* pInDistribution = static_cast<mixtureDistribution*>(_pSp->distr());
return optimizeParam(pInDistribution, maxIterations, alg, tol, pWeights, pOutF);
}
MDOUBLE GamMixtureOptimizer::optimizeParam(mixtureDistribution* pInDistribution, const int maxIterations, const OptimAlg alg, const MDOUBLE tol, const Vdouble * pWeights, ofstream* pOutF)
{
MDOUBLE res = 0.0;
switch (alg)
{
case EM: {
optGammaMixtureEM emOpt(*_pSp, *_pSc, *_pTree);
res = emOpt.optimizeParam(pInDistribution, maxIterations, tol, _tolOptSpecific, pOutF);
break;
}
case ONE_DIM: {
optGammaMixtureLS lsOpt(_pSp, *_pSc, *_pTree,MAXIMUM_ALPHA_PARAM,MAXIMUM_BETA_PARAM,_unObservableData_p);
res = lsOpt.optimizeParam(pInDistribution, maxIterations, tol, pWeights, optGammaMixtureLS::ONE_DIM);
MDOUBLE resRecompute = likelihoodComputation::getTreeLikelihoodAllPosAlphTheSame(*_pTree,*_pSc,*_pSp,pWeights,_unObservableData_p);
if(!DEQUAL(res,resRecompute)){
LOGnOUT(3,<<"--- error: different likelihood after GamMixtureOptimizer::optimizeParam,diff= "<<res-resRecompute <<"\n");
}
break;
}
//case TX_CONJUGATE_DERIVATIVES:
// {
// txGamMixtureOptimizer txOpt(_pSp, *_pSc, *_pTree);
// txOpt.setOptimizationParameters(tol, _tolOptSpecific, _tolOptSpecific, _tolOptSpecific);
// res = txOpt.optimizeParam(pInDistribution, maxIterations, pWeights, alg, pOutF);
// break;
// }
//case NR_CONJUGATE_DERIVATIVES:
// {
// optGammaMixtureLS opt(_pSp, *_pSc, *_pTree);
// res = opt.optimizeParam(pInDistribution, maxIterations, tol, pWeights, optGammaMixtureLS::CONJUGATE_DERIVATIVES, pOutF);
// break;
// }
default:
errorMsg::reportError("unknown optimization algorithm in GamMixtureOptimizer::optimizeParam()");
}
return res;
}

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#ifndef __GAMMIXTURE_OPTIMIZER
#define __GAMMIXTURE_OPTIMIZER
/************************************************************
GamMixtureOptimizer class is used to find the best Gamma mixture parameters.
The parameters to otimized are the alpha and beta of each component and the components probabilities.
The optimizer can choose between several optimization algorithms (EM, ConjugateDerivatives, etc).
The interface to the optimizer is the functions:
1. findBestParam() = given a gammaMixture - finds the best parameters.
2. findBestParamManyStarts() - finds the best parameters but starts from many initial points.
3. SetOptAlg() - choose the optimization algorithm to be used.
************************************************************/
#include "definitions.h"
#include "stochasticProcess.h"
#include "sequenceContainer.h"
#include "tree.h"
#include "mixtureDistribution.h"
#include "unObservableData.h"
class GamMixtureOptimizer{
public:
enum OptimAlg {EM, ONE_DIM, TX_CONJUGATE_DERIVATIVES, NR_CONJUGATE_DERIVATIVES};
public:
explicit GamMixtureOptimizer(stochasticProcess* cur_sp, const sequenceContainer& sc, const tree& inTree, unObservableData* unObservableData_p = NULL);
virtual ~GamMixtureOptimizer();
const stochasticProcess* getSp() const {return _pSp;}
const mixtureDistribution* getMixtureDist() const {return static_cast<mixtureDistribution*>(_pSp->distr());}
MDOUBLE findBestParamManyStarts(const Vint pointsNum, const Vint iterNum, const vector<OptimAlg> OptAlgs, const Vdouble tols, const Vdouble * pWeights, ofstream* pOutF = NULL);
//return the logLikelihood. the final distribution is stored in the stochasticProcess
MDOUBLE findBestParam(const OptimAlg alg, const int maxIterations, const MDOUBLE tol, const Vdouble * pWeights, ofstream* pOutF=NULL);
void setTolOptSpecific(const MDOUBLE tol) {_tolOptSpecific = tol;}
private:
MDOUBLE optimizeParam(mixtureDistribution* pInDistribution, const int maxIterations, const OptimAlg alg, const MDOUBLE tol, const Vdouble * pWeights, ofstream* pOutF);
private:
stochasticProcess* _pSp;
const sequenceContainer* _pSc;
const tree* _pTree;
unObservableData* _unObservableData_p;
MDOUBLE _tolOptSpecific; //tolerance specific to the optimization algorithm
};
#endif

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PTL2/Scripts-DEV/guidance.v2.02/libs/phylogeny/GamMixtureOptimizer.o Normal file
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24
PTL2/Scripts-DEV/guidance.v2.02/libs/phylogeny/HIVb.dat.q Normal file
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""
"0.16315391 "
"0.0026528488 0.15680618 "
"0.77200021 0.0026528488 9.3704985 "
"0.065662251 0.18661252 0.045663061 0.0026528488 "
"0.029241185 1.8153444 0.35657046 0.0026528488 0.0026528488 "
"0.7859595 0.039751241 0.042054709 5.6172481 0.0026528488 1.3583647 "
"1.1329574 1.9384101 0.17158679 1.5057888 0.47638319 0.032849536 2.0839453 "
"0.044971782 4.796584 4.0566567 1.0170492 0.12737547 3.7434084 0.063530422 0.0026528488 "
"0.0026528488 0.35934906 0.3610872 0.0093800488 0.0026528488 0.0026528488 0.0032315889 0.0026528488 0.054707578 "
"0.11420832 0.37215595 0.0026528488 0.0046480457 0.068855751 0.79296833 0.0026528488 0.0026528488 0.92409864 3.1615537 "
"0.0026528488 10.850151 4.1938515 0.0026528488 0.0026528488 3.4738365 2.4484839 0.27680089 0.0026528488 0.17101271 0.04324117 "
"0.009902713 1.3338205 0.0026528488 0.0026528488 0.0026528488 0.1611213 0.093268326 0.0026528488 0.0026528488 5.9458299 2.8224242 0.68043448 "
"0.0074953058 0.0026528488 0.0026528488 0.0026528488 4.9333171 0.0026528488 0.0026528488 0.15469345 0.077228672 1.803067 4.5230222 0.018180397 0.099760378 "
"1.1259592 0.68101281 0.0039239772 0.018180397 0.0026528488 2.3727663 0.0063788279 0.0026528488 1.3015831 0.021784823 1.1022958 0.016652568 0.0026528488 0.0026528488 "
"1.3085601 1.8459052 6.9741802 0.28026286 2.4900381 0.061711098 0.0026528488 2.324113 0.20307398 0.64624988 0.49218621 0.26746605 0.0026528488 0.50747511 2.8532025 "
"8.4457685 1.5220348 3.6538588 0.14576024 0.39260517 0.12924096 0.15374532 0.19610654 0.37755025 4.5693569 0.023221606 2.4785142 2.6211525 0.0074953058 1.0686577 4.7385556 "
"0.0026528488 0.52597396 0.0026528488 0.0026528488 1.3968681 0.014142867 0.0026528488 0.64556544 0.036884095 0.0026528488 0.39731344 0.0026528488 0.047262092 0.44002431 0.023584144 0.013196755 0.0026528488 "
"0.0026528488 0.0052623288 0.93601524 0.35795048 4.0213579 0.059971891 0.042054709 0.0026528488 9.9186301 0.078613459 0.059416384 0.0026528488 0.0026528488 8.13894 0.016149535 0.34382193 0.056055755 0.67924601 "
"4.0399067 0.043106352 0.014142867 0.55599996 0.22285362 0.011097026 0.54567507 0.50571521 0.0026528488 9.4117238 0.74829436 0.14104083 3.6361006 0.38374731 0.0026528488 0.039751241 0.37629386 0.0026528488 0.021784823 "
"0.060490222 0.066039665 0.044127815 0.042109048 0.020075899 0.053606488 0.071567447 0.072308239 0.022293943 0.069730629 0.098851122 0.056968211 0.019768318 0.028809447 0.046025282 0.05060433 0.053636813 0.033011601 0.028350243 0.061625237 "

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