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Preventing same contig/OG number bug in 4_CountOGsDiamond.py

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Auden Cote-L'Heureux 2023-10-06 10:42:21 -04:00 committed by GitHub
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commit f1d573458b
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PTL1/Genomes/Scripts/4_CountOGsDiamond.py
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@ -262,7 +262,7 @@ def update_fasta(args):
keep_dict = { } keep_dict = { }
for line in keep: for line in keep:
og_number = re.split('OG.{1}_', line.split('\t')[1])[1][:6] og_number = re.split('OG.{1}_', line.split('\t')[1])[1][:6]
og_prefix = line.split('\t')[1].split(og_number)[0][-4:] og_prefix = line.split('\t')[1].split(og_number)[-2][-4:]
og = og_prefix + og_number og = og_prefix + og_number
keep_dict.update({ re.split('_OG.{1}_', line.split('\t')[0])[0] : re.split('_OG.{1}_', line.split('\t')[0])[0] + '_' + og_prefix + line.split('\t')[1].split('_')[-1] }) keep_dict.update({ re.split('_OG.{1}_', line.split('\t')[0])[0] : re.split('_OG.{1}_', line.split('\t')[0])[0] + '_' + og_prefix + line.split('\t')[1].split('_')[-1] })