Auden Cote-L'Heureux
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229bd77cca
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Annotating 1b_CrossPlateContamination.py
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2024-01-16 12:07:32 -05:00 |
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Auden Cote-L'Heureux
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e9286e7d7a
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Updating header in 1b_CrossPlateContamination.py
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2024-01-16 11:55:23 -05:00 |
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Auden Cote-L'Heureux
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1bc56f2a52
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Updating header in 1a_TranscriptLengthFilter.py
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2024-01-16 11:53:01 -05:00 |
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Auden Cote-L'Heureux
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3d5cd6cebc
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Updating header in 1a_TranscriptLengthFilter.py
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2024-01-16 11:46:20 -05:00 |
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Auden Cote-L'Heureux
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bacb094028
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Cleaning up length filter
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2023-11-27 14:11:07 -05:00 |
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Auden Cote-L'Heureux
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0faa9f0b14
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Fixing stop codon 1/3 length issue
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2023-11-27 14:09:53 -05:00 |
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Auden Cote-L'Heureux
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842b229833
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Rename 6_SummaryStats.py to 5b_SummaryStats.py
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2023-11-10 10:21:35 -05:00 |
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Auden Cote-L'Heureux
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06e13e7caa
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Rename 5_FinalizeName.py to 5a_FinalizeName.py
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2023-11-10 10:21:24 -05:00 |
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Auden Cote-L'Heureux
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72660b742b
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Adding CheckSetup.py to the Genomes
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2023-10-30 17:18:56 -04:00 |
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Auden Cote-L'Heureux
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fbac4f6b09
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Add files via upload
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2023-10-30 16:40:40 -04:00 |
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Auden Cote-L'Heureux
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b8ac13a0f0
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Delete PTL1/Transcriptomes/Scripts/__pycache__ directory
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2023-10-30 15:18:42 -04:00 |
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Auden Cote-L'Heureux
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f1d573458b
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Preventing same contig/OG number bug in 4_CountOGsDiamond.py
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2023-10-06 10:42:21 -04:00 |
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Auden Cote-L'Heureux
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a515a08c61
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Fixing same contig/OG number bug in 6_FilterPartials.py
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2023-10-06 10:41:29 -04:00 |
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Auden Cote-L'Heureux
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694ece4648
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Typo
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2023-10-02 12:03:27 -04:00 |
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Auden Cote-L'Heureux
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f4faf95555
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Delete PTL1/Transcriptomes/Scripts/8_SummaryStats.py
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2023-10-02 11:49:27 -04:00 |
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Auden Cote-L'Heureux
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adc96d1dbc
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Delete PTL1/Transcriptomes/Scripts/7_FinalizeName.py
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2023-10-02 11:49:20 -04:00 |
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Auden Cote-L'Heureux
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1ee6f5ceb6
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Small changes, see description
- Default partial filter cov threshold is 20%
- Changed script names
- Made requirement of conspecific names file explicit when using XPC
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2023-10-02 11:49:03 -04:00 |
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Auden Cote-L'Heureux
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b2e381e01d
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Typo fix
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2023-10-02 11:12:44 -04:00 |
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Auden Cote-L'Heureux
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4b934b8de2
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Rename 4_InFrameStopCodonEsimator.py to 4_InFrameStopCodonEstimator.py
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2023-10-02 11:11:49 -04:00 |
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Auden Cote-L'Heureux
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fa294909c5
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Updates to script 6 filters & script names
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2023-09-29 13:20:49 -04:00 |
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Auden Cote-L'Heureux
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f9d747ce38
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Delete PTL1/Transcriptomes/Scripts/7_FinalizeName.py
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2023-09-29 13:20:17 -04:00 |
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Auden Cote-L'Heureux
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5f28d4447f
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Delete PTL1/Transcriptomes/Scripts/6b_update_cov_post_removepartials.py
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2023-09-29 13:20:11 -04:00 |
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Auden Cote-L'Heureux
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eb3db88688
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Delete PTL1/Transcriptomes/Scripts/6_FilterPartials.py
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2023-09-29 13:20:05 -04:00 |
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Auden Cote-L'Heureux
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02ec29d737
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Delete PTL1/Transcriptomes/Scripts/5_GCodeTranslate.py
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2023-09-29 13:19:55 -04:00 |
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Auden Cote-L'Heureux
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0b6823d007
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Delete PTL1/Transcriptomes/Scripts/4_InFrameStopFreq.py
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2023-09-29 13:19:49 -04:00 |
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Auden Cote-L'Heureux
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6746899daa
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Delete PTL1/Transcriptomes/Scripts/3_CountOGsDiamond.py
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2023-09-29 13:19:43 -04:00 |
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Auden Cote-L'Heureux
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18981a792f
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Delete PTL1/Transcriptomes/Scripts/2b_remove_Bact.py
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2023-09-29 13:19:36 -04:00 |
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Auden Cote-L'Heureux
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b6f439e7d6
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Delete PTL1/Transcriptomes/Scripts/2a_remove_rRNA.py
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2023-09-29 13:19:30 -04:00 |
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Auden Cote-L'Heureux
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3e01100304
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Delete PTL1/Transcriptomes/Scripts/1b_XSpeciesContaminationAgnes.py
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2023-09-29 13:19:23 -04:00 |
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Auden Cote-L'Heureux
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67bbdd30b8
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Delete PTL1/Transcriptomes/Scripts/1a_ContigFiltStats.py
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2023-09-29 13:19:12 -04:00 |
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Auden Cote-L'Heureux
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7d54bb7416
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New script 6 with revised length filtration
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2023-09-18 10:06:36 -04:00 |
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Auden Cote-L'Heureux
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8ccb6eb9a7
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Delete PTL1/Transcriptomes/Scripts/6_FilterPartials.py
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2023-09-18 10:05:39 -04:00 |
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Auden Cote-L'Heureux
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106b2e2d89
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Added annotation to 4_CountOGsDiamond.py
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2023-09-18 10:04:25 -04:00 |
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Auden Cote-L'Heureux
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8e561dc735
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New Script 6 with fixed ciliate genetic code issue
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2023-09-18 10:02:48 -04:00 |
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Auden Cote-L'Heureux
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d300ade1b0
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Delete PTL1/Genomes/Scripts/6_SummaryStats.py
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2023-09-18 10:02:35 -04:00 |
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Auden Cote-L'Heureux
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3015aaa2eb
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New Script 4 with added Hook-relative length filter
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2023-09-18 10:02:06 -04:00 |
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Auden Cote-L'Heureux
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a45f921955
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Delete PTL1/Genomes/Scripts/4_CountOGsDiamond.py
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2023-09-18 10:01:44 -04:00 |
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Auden Cote-L'Heureux
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bceb9ff1de
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Delete PTL1/Genomes/Output directory
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2023-09-13 14:17:43 -04:00 |
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Auden Cote-L'Heureux
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8a2010d510
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Delete PTL1/Transcriptomes/Output directory
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2023-09-13 14:17:32 -04:00 |
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Auden Cote-L'Heureux
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59f82e826c
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Small fix to 8_SummaryStats.py
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2023-08-21 13:25:04 -04:00 |
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Auden Cote-L'Heureux
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2f334642d3
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Small fix to 6_SummaryStats.py
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2023-08-21 13:24:42 -04:00 |
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Auden Cote-L'Heureux
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d4d1614e61
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Small fix to 6_SummaryStats.py
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2023-08-21 13:11:04 -04:00 |
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Auden Cote-L'Heureux
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b1bd9873af
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Adding date to stats summary script outputs
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2023-08-21 13:10:37 -04:00 |
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Auden Cote-L'Heureux
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37c1c36c7a
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Adding date to stat summary script
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2023-08-21 13:07:07 -04:00 |
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Auden Cote-L'Heureux
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f253022151
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Fixing 4-fold family error in CUB.py
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2023-08-21 12:47:45 -04:00 |
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Auden Cote-L'Heureux
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a24a546ade
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Fixing 4-fold family error in CUB.py
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2023-08-21 12:47:14 -04:00 |
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Auden Cote-L'Heureux
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b08135e9b4
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Removing matplotlib dependency from 8_SummaryStats.py
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2023-08-04 15:05:10 -04:00 |
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Auden Cote-L'Heureux
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ab65eb7851
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Removing matplotlib requirement from 6_SummaryStats.py
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2023-08-04 14:29:50 -04:00 |
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Auden Cote-L'Heureux
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020993b04f
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Delete scratch.py
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2023-06-15 09:24:50 -04:00 |
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Auden Cote-L'Heureux
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7800d18957
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Delete UnexpexctedShortStuffBlameXyrus.txt
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2023-06-15 09:24:40 -04:00 |
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