21 Commits

Author	SHA1	Message	Date
Auden Cote-L'Heureux	d161957d86	Taking out 'both' option of contamination loop	2025-03-28 15:40:58 -04:00
Godwin N. Ani	c39df0e39d	Update utils.py	2025-03-24 10:11:35 -04:00
Auden Cote-L'Heureux	fc190415ee	Updating headers in utils.py	2025-01-19 11:09:21 -05:00
Auden Cote-L'Heureux	4f5bce5963	Update utils.py	2025-01-12 12:35:05 -05:00
Auden Cote-L'Heureux	d595a51b4f	adding 'allow_large_files' flag	2025-01-09 12:20:59 -05:00
Auden Cote-L'Heureux	baf5fd037d	Adding TrimAl cutoff as parameter	2025-01-09 12:09:36 -05:00
Katzlab	d7f02a243c	Fixing concat_target_taxa file read error in concatenation	2024-08-26 15:56:42 -04:00
Katzlab	4b8a3fbe64	Delete PTL2/Scripts/utils.py	2024-08-26 15:56:15 -04:00
Katzlab	7904ec8b35	Fixing concat taxon list read error	2024-08-22 11:59:58 -04:00
Auden Cote-L'Heureux	426d51ea85	Changing default output location in utils.py	2024-05-29 12:44:15 -04:00
Godwin Ani	13e6d300c5	Adding keep_iter parameter	2024-03-22 15:07:25 -04:00
Auden Cote-L'Heureux	c308864f5c	annotating utils.py	2024-02-07 11:52:08 -05:00
Auden Cote-L'Heureux	0a7ab708b9	Updating contamination loop parameters in utils.py	2024-02-07 11:36:45 -05:00
Auden Cote-L'Heureux	9f2d34e056	Add OG identifier default utils.py	2024-01-12 13:25:17 -05:00
Godwin Ani	333585acde	added sim taxa and Og identifier flag	2023-12-04 15:52:10 -05:00
Godwin Ani	304cebc73f	Utils script with sim taxa and OG identifier flag	2023-12-04 15:00:10 -05:00
Auden Cote-L'Heureux	43a7439a02	Adjusting sim filter, adding score to guidance removed seqs output	2023-11-03 11:05:46 -04:00
Auden Cote-L'Heureux	6f1c37bcbc	Updating utils.py to account for addition of concatenation	2023-10-30 12:49:43 -04:00
Auden Cote-L'Heureux	7b3860a449	Update utils.py	2023-10-13 10:09:16 -04:00
Auden Cote-L'Heureux	cfd582f6ee	Minor changes to PTL2	2023-07-06 15:50:16 -04:00
Auden Cote-L'Heureux	f77ece5a2a	Add files via upload	2023-06-12 13:25:29 -04:00