44 Commits

Author	SHA1	Message	Date
Godwin N. Ani	033ed1237e	Add files via upload	2025-08-27 10:49:37 -04:00
Godwin N. Ani	efebf01057	Update wrapper_submit.sh	2025-08-25 10:58:25 -04:00
Adri K. Grow	c079b58d87	Update wrapper_submit.sh	2025-06-27 13:33:22 -04:00
Adri K. Grow	d16560f747	Update wrapper_submit.sh	2025-06-27 13:29:37 -04:00
Adri K. Grow	6ff435291c	Update wrapper_submit.sh	2025-02-18 16:29:05 -05:00
Auden Cote-L'Heureux	4f033e8ab2	Updating header and example runs in wrapper_submit.sh	2025-01-22 12:51:10 -05:00
Auden Cote-L'Heureux	375bfef45e	Updating header wrapper.py	2025-01-19 10:55:37 -05:00
Auden Cote-L'Heureux	f5bb221378	Updating header in CheckSetup.py	2025-01-19 10:54:49 -05:00
Katzlab	31d0a8ddb2	Update CUB.py ... headers	2025-01-19 10:54:01 -05:00
Katzlab	3491166695	Update 5b_SummaryStats.py ... updated headers	2025-01-19 10:51:39 -05:00
Katzlab	cd226beb9c	Update 4_CountOGsDiamond.py	2025-01-19 10:49:41 -05:00
Auden Cote-L'Heureux	bf669310fd	Updating header and Hook name check CheckSetup.py	2024-01-26 11:46:06 -05:00
Auden Cote-L'Heureux	df54de3589	Updating header in wrapper.py	2024-01-26 11:42:05 -05:00
Auden Cote-L'Heureux	a3a49f39d2	Updating header in CUB.py	2024-01-26 11:41:05 -05:00
Auden Cote-L'Heureux	f3116ff874	Updating header in 5b_SummaryStats.py	2024-01-26 11:40:30 -05:00
Auden Cote-L'Heureux	427f9f7125	Updating header in 4_CountOGsDiamond.py	2024-01-26 11:38:42 -05:00
Auden Cote-L'Heureux	887d136f5b	Updating header in 5a_FinalizeName.py	2024-01-26 11:37:19 -05:00
Auden Cote-L'Heureux	612e427b4a	Updating header in 4_CountOGsDiamond.py	2024-01-26 11:36:32 -05:00
Auden Cote-L'Heureux	fa20addc6e	Updating header in 3_GCodeTranslate.py	2024-01-26 11:35:25 -05:00
Auden Cote-L'Heureux	7e5e739574	Updating header in 2_GCodeEval.py	2024-01-26 11:30:22 -05:00
Auden Cote-L'Heureux	511f0e7766	Updating header in 1_RenameCDS.py	2024-01-26 11:26:00 -05:00
Auden Cote-L'Heureux	0faa9f0b14	Fixing stop codon 1/3 length issue	2023-11-27 14:09:53 -05:00
Auden Cote-L'Heureux	842b229833	Rename 6_SummaryStats.py to 5b_SummaryStats.py	2023-11-10 10:21:35 -05:00
Auden Cote-L'Heureux	06e13e7caa	Rename 5_FinalizeName.py to 5a_FinalizeName.py	2023-11-10 10:21:24 -05:00
Auden Cote-L'Heureux	72660b742b	Adding CheckSetup.py to the Genomes	2023-10-30 17:18:56 -04:00
Auden Cote-L'Heureux	f1d573458b	Preventing same contig/OG number bug in 4_CountOGsDiamond.py	2023-10-06 10:42:21 -04:00
Auden Cote-L'Heureux	106b2e2d89	Added annotation to 4_CountOGsDiamond.py	2023-09-18 10:04:25 -04:00
Auden Cote-L'Heureux	8e561dc735	New Script 6 with fixed ciliate genetic code issue	2023-09-18 10:02:48 -04:00
Auden Cote-L'Heureux	d300ade1b0	Delete PTL1/Genomes/Scripts/6_SummaryStats.py	2023-09-18 10:02:35 -04:00
Auden Cote-L'Heureux	3015aaa2eb	New Script 4 with added Hook-relative length filter	2023-09-18 10:02:06 -04:00
Auden Cote-L'Heureux	a45f921955	Delete PTL1/Genomes/Scripts/4_CountOGsDiamond.py	2023-09-18 10:01:44 -04:00
Auden Cote-L'Heureux	bceb9ff1de	Delete PTL1/Genomes/Output directory	2023-09-13 14:17:43 -04:00
Auden Cote-L'Heureux	2f334642d3	Small fix to 6_SummaryStats.py	2023-08-21 13:24:42 -04:00
Auden Cote-L'Heureux	d4d1614e61	Small fix to 6_SummaryStats.py	2023-08-21 13:11:04 -04:00
Auden Cote-L'Heureux	37c1c36c7a	Adding date to stat summary script	2023-08-21 13:07:07 -04:00
Auden Cote-L'Heureux	f253022151	Fixing 4-fold family error in CUB.py	2023-08-21 12:47:45 -04:00
Auden Cote-L'Heureux	ab65eb7851	Removing matplotlib requirement from 6_SummaryStats.py	2023-08-04 14:29:50 -04:00
Auden Cote-L'Heureux	09b2599f3e	Add files via upload	2023-06-13 15:06:00 -04:00
Auden Cote-L'Heureux	7da3de77e4	Add files via upload	2023-06-13 14:00:56 -04:00
Auden Cote-L'Heureux	540af11c9a	Delete .DS_Store	2023-06-12 13:30:54 -04:00
Auden Cote-L'Heureux	cc83374ce4	Add files via upload	2023-06-12 13:30:20 -04:00
Auden Cote-L'Heureux	3347fc979a	Delete PTL1/Genomes/Scripts directory	2023-06-12 13:30:05 -04:00
Auden Cote-L'Heureux	58294fa143	Delete .DS_Store	2023-06-12 13:19:24 -04:00
Katzlab	d59c79b149	PTL1 ... These are PTL1 scripts from ACL on Feb8. NOTE: These are WITHOUT databases..... these are at (Katzlab only) link here https://drive.google.com/drive/folders/10n1GdTJqEOBg1nGA1hjxNHgaNZgmbwb5	2023-02-14 11:30:14 -05:00