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Updated Home (markdown)
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@ -8,8 +8,9 @@ We also provide a suite of utility scripts for describing data output by PhyloTo
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* [Overview & modularity](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#overview-and-modularity)
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* [Overview & modularity](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#overview-and-modularity)
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* [Setup](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#setup)
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* [Setup](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#setup)
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* [The Hook Database](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#the-hook-database)
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* [The Hook Database](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#the-hook-database)
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* [Processing transcriptomes](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#processing-transcriptomes)
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* [Running]
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* [Processing genomes](https://github.com/Katzlab/PhyloToL-6/wiki/Part1phylotol-part-1#processing-genomes)
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> ** [Processing transcriptomes](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-1#processing-transcriptomes)
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> ** [Processing genomes](https://github.com/Katzlab/PhyloToL-6/wiki/Part1phylotol-part-1#processing-genomes)
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## PhyloToL Part 2
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## PhyloToL Part 2
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* [Overview & modularity](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2#overview-and-modularity)
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* [Overview & modularity](https://github.com/Katzlab/PhyloToL-6/wiki/phylotol-part-2#overview-and-modularity)
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