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Updated EukPhylo Part 2: MSAs, trees, and contamination loop (markdown)
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@ -194,7 +194,7 @@ You can also change the tree-building method using the `--cl_tree_method` argume
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#### Sisters/subsisters mode
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Below are the parameters for running sisters/subsisters. You must give a rules file to EITHER --sister_rules or --subsister_rules, or both.
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Below are the parameters for running sisters/subsisters. You must give a rules file to EITHER `--sister_rules` or `--subsister_rules`, or both.
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| Parameter | Required | Options | Description | Default |
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| ------------- | ------------- | ------------- | ------------- | ------------- |
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