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Updated QuickStart EukPhylo (markdown)

Adri K. Grow 2025-01-28 14:43:38 -05:00
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QuickStart-EukPhylo.md

@ -121,9 +121,9 @@ If a user choose to use their own gene families database, they need to replace t
## Running ## Running
### Basic running for building MSAs and Trees ### Basic running for building MSAs and Trees
```
python3 Scripts/phylotol.py --start raw --end trees --gf_list listofOGs.txt --taxon_list taxon_list.txt --data OutgroupR2Gs --output Output_folder > Output1.out python3 Scripts/phylotol.py --start raw --end trees --gf_list listofOGs.txt --taxon_list taxon_list.txt --data OutgroupR2Gs --output Output_folder > Output1.out
```
For information on each of the possible input parameters, read below and run “python phylotol.py --help” For information on each of the possible input parameters, read below and run “python phylotol.py --help”