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Updated EukPhylo QuickStart (markdown)

Adri K. Grow 2025-02-09 01:30:53 -05:00
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EukPhylo-QuickStart.md

@ -139,10 +139,10 @@ For additional input parameter options, see table below or run: `python phylotol
Below are several optional ways to parameterize EukPhylo Part 2
**General:**
|Parameter|Options|Help|
|:---|:---|:---|
|`--force`|action = store_true|Overwrites all existing files in the `Output` folder|
|`--tree_method`|default = `iqtree`, choices = {`iqtree`, `raxml`, `all`|Change tree building software|
|Parameter|Options|Description|Default|
|:---|:---|:---|:---|
|`--force`||Overwrites all existing files in the `Output` folder|
|`--tree_method`|`iqtree`, `iqtree_fast`, `raxml`, `fasttree`|Change tree building software|`iqtree`|
**For BLAST and GUIDANCE:**
|Parameter|Options|Description|Default|