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Updated QuickStart EukPhylo (markdown)

Godwin Ani 2025-01-24 16:33:13 -05:00
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QuickStart-EukPhylo.md

@ -40,10 +40,10 @@ EukPhylo part 1 runs CDS (genome) or assembled transcripts (transcriptome) throu
* A folder called “AssembledTranscripts” with your assembled transcript fasta files * A folder called “AssembledTranscripts” with your assembled transcript fasta files
* A folder called “Databases” with the three sub folders: * A folder called “Databases” with the three sub folders:
* db_BvsE (how we ID likely-bacterial sequences) * db_BvsE (how we ID likely-bacterial sequences)
* * db_StopFreq (for stop codon assignment) * db_StopFreq (for stop codon assignment)
* * db_OG * db_OG
* * * Hook *.dmnd file ([Current version Hook-6.6.dmnd]) * Hook *.dmnd file ([Current version Hook-6.6.dmnd])
* * * Hook *.fasta file ([Current version Hook-6.6.fasta]) * Hook *.fasta file ([Current version Hook-6.6.fasta])
* A folder called “Scripts” filled with scripts from [here](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1/Transcriptomes/Scripts) on Github * A folder called “Scripts” filled with scripts from [here](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1/Transcriptomes/Scripts) on Github
### Running: ### Running: