YuuMJ1997/EukPhylo
1
0
Fork 0
mirror of http://43.156.76.180:8026/YuuMJ/EukPhylo.git synced 2025-12-31 00:30:24 +08:00
Code Issues Packages Projects Releases Wiki Activity

Updated PhyloToL Part 1: GF assignment (markdown)

Godwin Ani 2024-08-12 12:25:43 -04:00
parent 5b9924291b
commit 75609183e8
1 changed files with 5 additions and 5 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

10
PhyloToL-Part-1:-GF-assignment.md

@ -71,11 +71,11 @@ Replacing the PhyloToL Hook DB with a user-defined set of gene families is strai
Role of each script Role of each script
<img src="https://github.com/Katzlab/PhyloToL-6/blob/main/Other/PTL1_Processing_Transcriptomes_scripts.png" width="100%"> <img src="https://github.com/Katzlab/PhyloToL-6/blob/main/Other/PTL1_Processing_Transcriptomes_scripts.png" width="100%">
Main inputs : A folder containing the assembled transcripts, a folder containing the Databases, and a folder containing the scripts. * Main inputs : A folder containing the assembled transcripts, a folder containing the Databases, and a folder containing the scripts.
*Optional inputs : Gcodes.txt and Conspecific.txt * *Optional inputs : Gcodes.txt and Conspecific.txt
Outputs : ReadyToGo files (AA and NTD), taxon summary, and sequence summary. * Outputs : ReadyToGo files (AA and NTD), taxon summary, and sequence summary.
* The Gcodes.txt is a tab separated txt file containing the genetic code of the taxa. This will most likely not be needed except for some organisms like ciliates. * *The Gcodes.txt is a tab separated txt file containing the genetic code of the taxa. This will most likely not be needed except for some organisms like ciliates.
Example: * Example:
| Taxa | Genetic code | | Taxa | Genetic code |
| ----------- | --------- | | ----------- | --------- |