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Updated PhyloToL Part 1: GF assignment (markdown)

Godwin Ani 2024-08-13 10:30:50 -04:00
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PhyloToL-Part-1:-GF-assignment.md

@ -99,7 +99,7 @@ As you run PhyloToL part 1 on transcriptomes, you might want to remove sequences
`python Scripts/wrapper.py --first_script 1 --last_script 7 --assembled_transcripts AssembledTranscripts --output . --genetic_code Gcode.txt --databases Databases --xplate_contam --conspecific_names Conspecific.txt > log.txt` `python Scripts/wrapper.py --first_script 1 --last_script 7 --assembled_transcripts AssembledTranscripts --output . --genetic_code Gcode.txt --databases Databases --xplate_contam --conspecific_names Conspecific.txt > log.txt`
Example of a Conspecific.txt file Example of a Conspecific.txt file
| Taxa | plate | | Taxa | identifying name |
| ----- |------ | | ----- |------ |
| EE_uc_Me04 | Metatranscriptome | | EE_uc_Me04 | Metatranscriptome |
| EE_uc_Me05 | Metatranscriptome | | EE_uc_Me05 | Metatranscriptome |