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Updated TroubleShooting & FAQs (markdown)

Katzlab 2024-08-14 05:03:26 -04:00
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TroubleShooting-&-FAQs.md

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# [Troubleshooting](https://github.com/Katzlab/PhyloToL-6/wiki/TroubleShooting-&-FAQs#Troubleshooting)
## Common errors in setting up PhyloToL include:
* failure to name files or paths correctly (capitalization and spacing matter)
* failure to control names of sequences (search for 10 digit code throughout wiki)
# [FAQs](https://github.com/Katzlab/PhyloToL-6/wiki/TroubleShooting-&-FAQs#FAQs)
* Where can I find the figures and databases referred to here
> Most items are found in our [figshare folder](https://figshare.com/account/home#/projects/196552)
* How do I set up my names and fasta files?
> Required elements are:
> * unique 10 digit code for each taxon (e.g. Op_me_Hsap for humans, Ba_pg_Ecol for _E. coli_)