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Update step.sh

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YuuMJ 2025-06-04 17:36:47 +08:00
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4_prediction/step.sh
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@ -24,11 +24,11 @@ getAnnoFasta.pl Sacc_cerevisiae.gff3 && mv Sacc_cerevisiae.aa Sacc_cerevisiae_au
# 从预测结果中提取氨基酸序列 # 从预测结果中提取氨基酸序列
TransDecoder.LongOrfs \ TransDecoder.LongOrfs \
-t ../3_decontamination/5_Sacc_cerevisiae_dec_all_cov1_cdhit.fasta \ -t ../3_decontamination/5_S_dharwarensis_dec_all_cdhit.fasta \
-O LongOrfs/Sacc_cerevisiae_clean_cdhit_ciliate \ -O S_dharwarensis_clean_cdhit_predict \
-G Ciliate -G Ciliate
TransDecoder.Predict \ TransDecoder.Predict \
-t ../3_decontamination/5_Sacc_cerevisiae_dec_all_cov1_cdhit.fasta \ -t ../3_decontamination/5_S_dharwarensis_dec_all_cdhit.fasta \
-O Sacc_cerevisiae_clean_cdhit_predict \ -O S_dharwarensis_clean_cdhit_predict \
-G Ciliate -G Ciliate
#转录组数据基因预测，-G参数改成help命令中相应物种的对应密码子，两条指令一起提交脚本运行 #转录组数据基因预测，-G参数改成help命令中相应物种的对应密码子，两条指令一起提交脚本运行